Rorug04G0436900

serine threonine-protein kinase HT1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
59429050 .. 59431173
2124 bp
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UTR
Exon/CDS
Intron
Rorug04G0436900.1

Sequence Viewer

Length: 1410 bp
ATGGAGAGCAATAGAGAATACAGAGGTCATGTTGTGGTGCTTCCTTATCCTAGCCAGGGCCACATCAACCCTCTCCTCCAATTTGCAAAGCGCCTAGCCTCTAAAGGCGTCAAGGCCACACTAGCCACAACCAGTTACACTGTCAGCTCCATTAGCGTCCACAACATCGGAGTCGAGTCCATCTCCGATGGTTTCGACGAGTCTGGTTTTGCTCAAGCGGCCGATGAGGAAACATTTCTTCAGTCGTTCAAGGCCAATGGCTCGAGAACCCTATCCCAAGTCCTGAAGAAGTTCGAAGACTCCGAGTTCCCGGTGAATTGTGTTGTGTATGATTCCTTTCTGCCTTGGGCTCTTGATGTGGCCAAGGAACATGGCATATATGGAGCCACTTTTTTCACCAATTCGGCTACTGTGTGTAGCATTGTGTGTCAAATTCATCATGGACTATTTTCTCTGCCGTTTAAGCCTGAAGACATGCCCTTGCTGATTCCTGGCCTGCCTCCACTGAACCTTCTTGACCTGCCAAGTATGCTTCAGAAACCAAATAGTCACCCAGCTTACTTGAAGATGAAATTGAACCAGTATTCTAACTTGGACGAGGCTGACTGGATCTTTGGAAATACTTTCCAAGCACTAGAAGGCGAGGCTGCCAAAGGAGTAGCAAAGCTGTGGCCAGCAAAGTTGATTGGCCCTATGGTCCCTTCAGCTTATTTGGATGGTCAGATCAAAGGGGATAGAGGATATGGAGCAAGCCTATGGAAGCCTCTTGGTGAAGAATGCATCAAATGGCTAGAAGCAAAGGCACCTAGATCAGTGGTGTATGTCTCCTTTGGAAGCATGGTGTCCCTGACAGCAGAGCAGATGGAAGAGTTTGCGTTGGGCTTGAAAGAAAGTGGGGTACACTTTCTGTGGGTGGTAAGAGCATCTGAACTGAGTAAATTGCCGAATGAAAGCATTGACTCAGTAAAGGAAAGGGGTCTACTAGTGACTTGGTGTAACCAGCTGGAAGCTTTGGCACATGATGCAATTGGGTGCTTTGTGACTCATTGTGGTTGGAATTCGATTCTCGAAGGGCTCAGCCTTGGGGTTCCAATGGTTGCAGTGCCAAAGTGGGCTGATCAAATGACCAATGCTAAGTTTGTGGAGGAGATTTGGGAGGTTGGAGTCAGAGCCAAGGAAGATGATGGGGGAATTGTGAGGAAAGAAGAATTTGTTGGGTGTCTGAAGGAAGTGATGGAGGGAGAGAGAAGCAAAGAGATTAAGAAGAATTCGAGTAAATGGAGGGAGTTAGCTAAGAAGGAAATCAGTGAGGGGGGAAGCTCAGACAAGTGTATTAGTGAATTTGTAGCGCATTTGTGTGCTAATCAGACAGGAGAGGTCAAGACATTCCTGAATGACAAGGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

469

Amino Acids

51.81

Weight (kDa)

5.44

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 11 - 49 3.9e-06 Glycosyltransferase, N-terminal domain
UDPGT PF00201 250 - 419 3.8e-29 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 802
AccI GTMKAC 1 cut(s) 979
AciI CCGC 1 cut(s) 218
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 3 cut(s) 219, 360, 671
AcsI RAATTY 5 cut(s) 432, 1057, 1208, 1267, 1340
AcuI CTGAAG 6 cut(s) 224, 305, 489, 518, 687, 1244
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 900
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 4 cut(s) 250, 565, 577, 886
AhlI ACTAGT 1 cut(s) 982
AjnI CCWGG 2 cut(s) 54, 490
AjuI GAANNNNNNNTTGG 2 cut(s) 1197, 1229
AluBI AGCT 8 cut(s) 147, 557, 667, 707, 1003, 1010, 1292, 1320
AluI AGCT 8 cut(s) 147, 557, 667, 707, 1003, 1010, 1292, 1320
Alw26I GTCTC 1 cut(s) 829
AlwI GGATC 1 cut(s) 617
Ama87I CYCGRG 1 cut(s) 262
AoxI GGCC 8 cut(s) 58, 114, 219, 252, 360, 493, 671, 688
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 5 cut(s) 432, 1057, 1208, 1267, 1340
ArsI GACNNNNNNTTYG 2 cut(s) 596, 628
Asp700I GAANNNNTTC 2 cut(s) 234, 290
AspLEI GCGC 2 cut(s) 93, 1351
AspS9I GGNCC 3 cut(s) 58, 689, 697
AsuC2I CCSGG 1 cut(s) 311
AsuHPI GGTGA 4 cut(s) 325, 388, 542, 782
AsuII TTCGAA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 262
AvaII GGWCC 1 cut(s) 697
BalI TGGCCA 2 cut(s) 362, 673
BanI GGYRCC 1 cut(s) 802
BanII GRGCYC 2 cut(s) 352, 1077
BbsI GAAGAC 2 cut(s) 303, 477
BbvI GCAGC 1 cut(s) 634
BccI CCATC 6 cut(s) 182, 188, 710, 856, 1178, 1228
BceAI ACGGC 1 cut(s) 442
BciT130I CCWGG 2 cut(s) 56, 492
BclI TGATCA 1 cut(s) 1117
BcnI CCSGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 829
BcuI ACTAGT 1 cut(s) 982
BfaI CTAG 7 cut(s) 51, 95, 122, 635, 791, 807, 983
BfoI RGCGCY 1 cut(s) 94
BfuAI ACCTGC 1 cut(s) 528
BisI GCNGC 2 cut(s) 219, 648
BlpI GCTNAGC 1 cut(s) 1076
BlsI GCNGC 2 cut(s) 220, 649
Bme1390I CCNGG 3 cut(s) 56, 311, 492
Bme18I GGWCC 1 cut(s) 697
BmeT110I CYCGRG 1 cut(s) 262
BmgT120I GGNCC 3 cut(s) 58, 689, 697
BmiI GGNNCC 4 cut(s) 385, 699, 804, 1089
BmrFI CCNGG 3 cut(s) 56, 311, 492
BmsI GCATC 3 cut(s) 789, 932, 1012
BpiI GAAGAC 2 cut(s) 303, 477
BplI GAGNNNNNCTC 2 cut(s) 167, 199
Bpu1102I GCTNAGC 1 cut(s) 1076
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 311
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 5 cut(s) 55, 344, 363, 1081, 1173
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 3 cut(s) 132, 580, 611
BseBI CCWGG 2 cut(s) 56, 492
BseDI CCNNGG 5 cut(s) 55, 344, 363, 1081, 1173
BseGI GGATG 1 cut(s) 721
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMII CTCAG 4 cut(s) 923, 975, 1090, 1335
BseNI ACTGG 3 cut(s) 132, 580, 611
BseRI GAGGAG 2 cut(s) 65, 1160
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 634
BseYI CCCAGC 1 cut(s) 553
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 8 cut(s) 60, 116, 221, 254, 362, 495, 673, 690
BshNI GGYRCC 1 cut(s) 802
BsiEI CGRYCG 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 262
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 2 cut(s) 683, 829
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 829
BsmFI GGGAC 2 cut(s) 683, 829
BsmI GAATGC 1 cut(s) 782
BsnI GGCC 8 cut(s) 60, 116, 221, 254, 362, 495, 673, 690
BsoBI CYCGRG 1 cut(s) 262
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 352, 1077
Bsp143I GATC 4 cut(s) 609, 723, 809, 1117
Bsp1720I GCTNAGC 1 cut(s) 1076
BspACI CCGC 1 cut(s) 218
BspANI GGCC 8 cut(s) 60, 116, 221, 254, 362, 495, 673, 690
BspCNI CTCAG 4 cut(s) 924, 974, 1089, 1334
BspLI GGNNCC 4 cut(s) 385, 699, 804, 1089
BspMI ACCTGC 1 cut(s) 528
BspPI GGATC 1 cut(s) 617
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 802
BsrI ACTGG 3 cut(s) 132, 580, 611
BssECI CCNNGG 5 cut(s) 55, 344, 363, 1081, 1173
BssMI GATC 4 cut(s) 609, 723, 809, 1117
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 4 cut(s) 344, 363, 1081, 1173
Bst2UI CCWGG 2 cut(s) 56, 492
Bst4CI ACNGT 2 cut(s) 142, 412
Bst6I CTCTTC 1 cut(s) 861
BstACI GRCGYC 1 cut(s) 108
BstAPI GCANNNNNTGC 1 cut(s) 1022
BstBI TTCGAA 1 cut(s) 294
BstC8I GCNNGC 3 cut(s) 497, 675, 751
BstDEI CTNAG 6 cut(s) 932, 961, 1076, 1134, 1293, 1321
BstF5I GGATG 1 cut(s) 721
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 2 cut(s) 93, 1351
BstKTI GATC 4 cut(s) 612, 726, 812, 1120
BstMAI GTCTC 1 cut(s) 829
BstMBI GATC 4 cut(s) 609, 723, 809, 1117
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 6 cut(s) 122, 153, 218, 463, 529, 1022
BstNI CCWGG 2 cut(s) 56, 492
BstNSI RCATGY 1 cut(s) 478
BstSCI CCNGG 3 cut(s) 54, 309, 490
BstV1I GCAGC 1 cut(s) 634
BstV2I GAAGAC 2 cut(s) 303, 477
BstX2I RGATCY 1 cut(s) 609
BstYI RGATCY 1 cut(s) 609
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 8 cut(s) 60, 116, 221, 254, 362, 495, 673, 690
BtsCI GGATG 1 cut(s) 721
BtsI GCAGTG 1 cut(s) 1107
BtsIMutI CAGTG 5 cut(s) 138, 503, 819, 1107, 1312
BveI ACCTGC 1 cut(s) 528
Cac8I GCNNGC 3 cut(s) 497, 675, 751
CfoI GCGC 2 cut(s) 93, 1351
Cfr13I GGNCC 3 cut(s) 58, 689, 697
CseI GACGC 2 cut(s) 97, 145
Csp6I GTAC 1 cut(s) 899
CviAII CATG 6 cut(s) 29, 371, 440, 475, 838, 1019
CviQI GTAC 1 cut(s) 899
DdeI CTNAG 6 cut(s) 932, 961, 1076, 1134, 1293, 1321
DpnI GATC 4 cut(s) 611, 725, 811, 1119
DpnII GATC 4 cut(s) 609, 723, 809, 1117
EaeI YGGCCR 3 cut(s) 219, 360, 671
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 861
EarI CTCTTC 1 cut(s) 861
EclXI CGGCCG 1 cut(s) 219
Eco130I CCWWGG 4 cut(s) 344, 363, 1081, 1173
Eco24I GRGCYC 2 cut(s) 352, 1077
Eco47I GGWCC 1 cut(s) 697
Eco52I CGGCCG 1 cut(s) 219
Eco57I CTGAAG 6 cut(s) 224, 305, 489, 518, 687, 1244
Eco88I CYCGRG 1 cut(s) 262
EcoRI GAATTC 2 cut(s) 1057, 1267
EcoRII CCWGG 2 cut(s) 54, 490
EcoT14I CCWWGG 4 cut(s) 344, 363, 1081, 1173
EcoT22I ATGCAT 1 cut(s) 782
EcoT38I GRGCYC 2 cut(s) 352, 1077
ErhI CCWWGG 4 cut(s) 344, 363, 1081, 1173
FaeI CATG 6 cut(s) 32, 374, 443, 478, 841, 1022
FaqI GGGAC 2 cut(s) 683, 829
FatI CATG 6 cut(s) 28, 370, 439, 474, 837, 1018
FbaI TGATCA 1 cut(s) 1117
FblI GTMKAC 1 cut(s) 979
Fnu4HI GCNGC 2 cut(s) 219, 648
FokI GGATG 1 cut(s) 728
FriOI GRGCYC 2 cut(s) 352, 1077
Fsp4HI GCNGC 2 cut(s) 219, 648
FspBI CTAG 7 cut(s) 51, 95, 122, 635, 791, 807, 983
GlaI GCGC 2 cut(s) 92, 1350
GluI GCNGC 2 cut(s) 219, 648
GsaI CCCAGC 1 cut(s) 557
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 8 cut(s) 60, 116, 221, 254, 362, 495, 673, 690
HapII CCGG 1 cut(s) 311
HgaI GACGC 2 cut(s) 97, 145
HhaI GCGC 2 cut(s) 93, 1351
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 32, 374, 443, 478, 841, 1022
Hin6I GCGC 2 cut(s) 91, 1349
HinP1I GCGC 2 cut(s) 91, 1349
HindIII AAGCTT 1 cut(s) 1008
HpaII CCGG 1 cut(s) 311
HphI GGTGA 4 cut(s) 325, 388, 542, 782
Hpy166II GTNNAC 3 cut(s) 160, 901, 980
Hpy188III TCNNGA 7 cut(s) 264, 283, 353, 515, 1067, 1381, 1390
Hpy8I GTNNAC 3 cut(s) 160, 901, 980
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 6 cut(s) 521, 632, 711, 1064, 1219, 1291
HpyCH4III ACNGT 2 cut(s) 142, 412
HpyCH4V TGCA 4 cut(s) 86, 780, 1025, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 153, 218, 463, 529, 1022
HpyF3I CTNAG 6 cut(s) 932, 961, 1076, 1134, 1293, 1321
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 32, 374, 443, 478, 841, 1022
HspAI GCGC 2 cut(s) 91, 1349
Ksp22I TGATCA 1 cut(s) 1117
Kzo9I GATC 4 cut(s) 609, 723, 809, 1117
LmnI GCTCC 3 cut(s) 152, 383, 746
Lsp1109I GCAGC 1 cut(s) 634
LweI GCATC 3 cut(s) 789, 932, 1012
MaeI CTAG 7 cut(s) 51, 95, 122, 635, 791, 807, 983
MaeIII GTNAC 5 cut(s) 134, 548, 985, 995, 1039
MalI GATC 4 cut(s) 611, 725, 811, 1119
MboI GATC 4 cut(s) 609, 723, 809, 1117
MfeI CAATTG 1 cut(s) 1026
MflI RGATCY 1 cut(s) 609
MhlI GDGCHC 2 cut(s) 352, 1077
MlsI TGGCCA 2 cut(s) 362, 673
MluNI TGGCCA 2 cut(s) 362, 673
MlyI GAGTC 7 cut(s) 180, 185, 209, 293, 953, 1036, 1173
MmeI TCCRAC 2 cut(s) 1034, 1141
Mox20I TGGCCA 2 cut(s) 362, 673
Mph1103I ATGCAT 1 cut(s) 782
MroXI GAANNNNTTC 2 cut(s) 234, 290
MscI TGGCCA 2 cut(s) 362, 673
MseI TTAA 2 cut(s) 462, 1260
MslI CAYNNNNRTG 1 cut(s) 1356
Msp20I TGGCCA 2 cut(s) 362, 673
MspA1I CMGCKG 1 cut(s) 1003
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 3 cut(s) 56, 311, 492
MunI CAATTG 1 cut(s) 1026
Mva1269I GAATGC 1 cut(s) 782
MvaI CCWGG 2 cut(s) 56, 492
MwoI GCNNNNNNNGC 6 cut(s) 122, 153, 218, 463, 529, 1022
NciI CCSGG 1 cut(s) 311
NdeII GATC 4 cut(s) 609, 723, 809, 1117
NlaIII CATG 6 cut(s) 32, 374, 443, 478, 841, 1022
NlaIV GGNNCC 4 cut(s) 385, 699, 804, 1089
NmuCI GTSAC 3 cut(s) 548, 985, 1039
NsiI ATGCAT 1 cut(s) 782
NspI RCATGY 1 cut(s) 478
NspV TTCGAA 1 cut(s) 294
PaeR7I CTCGAG 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PctI GAATGC 1 cut(s) 782
PdmI GAANNNNTTC 2 cut(s) 234, 290
PfeI GAWTC 3 cut(s) 332, 487, 1063
PkrI GCNGC 2 cut(s) 220, 649
PleI GAGTC 7 cut(s) 179, 184, 208, 293, 953, 1036, 1172
PpsI GAGTC 7 cut(s) 179, 184, 208, 293, 953, 1036, 1172
Psp6I CCWGG 2 cut(s) 54, 490
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 2 cut(s) 54, 490
PspN4I GGNNCC 4 cut(s) 385, 699, 804, 1089
PspPI GGNCC 3 cut(s) 58, 689, 697
PsuI RGATCY 1 cut(s) 609
PvuII CAGCTG 1 cut(s) 1003
RsaI GTAC 1 cut(s) 900
RsaNI GTAC 1 cut(s) 899
RseI CAYNNNNRTG 1 cut(s) 1356
SaqAI TTAA 2 cut(s) 462, 1260
SatI GCNGC 2 cut(s) 219, 648
Sau3AI GATC 4 cut(s) 609, 723, 809, 1117
Sau96I GGNCC 3 cut(s) 58, 689, 697
SchI GAGTC 7 cut(s) 180, 185, 209, 293, 953, 1036, 1173
ScrFI CCNGG 3 cut(s) 56, 311, 492
SduI GDGCHC 2 cut(s) 352, 1077
SfaNI GCATC 3 cut(s) 789, 932, 1012
Sfr274I CTCGAG 1 cut(s) 262
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 1 cut(s) 697
SlaI CTCGAG 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 1356
SmlI CTYRAG 2 cut(s) 213, 262
SmoI CTYRAG 2 cut(s) 213, 262
SpeI ACTAGT 1 cut(s) 982
SsiI CCGC 1 cut(s) 218
SspMI CTAG 7 cut(s) 51, 95, 122, 635, 791, 807, 983
StyD4I CCNGG 3 cut(s) 54, 309, 490
StyI CCWWGG 4 cut(s) 344, 363, 1081, 1173
TaaI ACNGT 2 cut(s) 142, 412
TaqI TCGA 7 cut(s) 174, 195, 263, 294, 1061, 1068, 1271
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 3 cut(s) 332, 487, 1063
Tru1I TTAA 2 cut(s) 462, 1260
Tru9I TTAA 2 cut(s) 462, 1260
TscAI CASTG 5 cut(s) 145, 510, 819, 1107, 1312
TseFI GTSAC 3 cut(s) 548, 985, 1039
TseI GCWGC 1 cut(s) 647
Tsp45I GTSAC 3 cut(s) 548, 985, 1039
TspDTI ATGAA 3 cut(s) 425, 584, 963
TspRI CASTG 5 cut(s) 145, 510, 819, 1107, 1312
VpaK11BI GGWCC 1 cut(s) 697
XapI RAATTY 5 cut(s) 432, 1057, 1208, 1267, 1340
XceI RCATGY 1 cut(s) 478
XhoI CTCGAG 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 979
XmnI GAANNNNTTC 2 cut(s) 234, 290
XspI CTAG 7 cut(s) 51, 95, 122, 635, 791, 807, 983
Zsp2I ATGCAT 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.