Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005049

Physical Location & Seq

Genomic Coordinates Forward (+)

2861871 .. 2862393

Gene Structure 523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG043600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTTCACAATCTAAGGGATCACATCTGTCGCATTCGTCTTCGAATACTAGCCCCCTCAGGCACTTGGCTTCAATGAAAGTCAGTGACAAATCGAGCAAATCAAAGAGGAAAGAATCGCCTTGGGCTAAGTATTTTGATCATGGAGGTGGGAGAGTTAATGAGGTGGATGCTGCAGATGAATTTAGTGTTGATTTGTCAAAGCTGTTTCTTGGTCATAAGTTTGCTCATGGAGCTCATAGCACGCTTTATCATGGGATTTACAATGAGGAAGCTGTTGCAGTTAAGATCGTCAGGGTACCGGAAGATGACGAAGGAGGAGTCTTGGCAGATCGATTGGAGAAACAATTTAACAGAGAGGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

122

Amino Acids

13.44

Weight (kDa)

8.03

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58950
fragaria_vesca	FvH4_3g09060 FvH4_3g09060 FvH4_3g09060
malus_domestica	MD05G1338300.v1.1 MD10G1293400.v1.1
prunus_persica	Prupe.4G048400_v2.0.a1 Prupe.4G048400_v2.0.a1
pyrus_communis	pycom05g28970 pycom10g24540
rosa_chinensis	RchiOBHm_Chr3g0452421 RchiOBHm_Chr5g0008571
rosa_laevigata	RLG00000025604 RLG00000031584
rosa_multiflora	Rmu_co8323009.1_g000001 Rmu_sc0001665.1_g000020 Rmu_sc0011680.1_g000010
rosa_roxburghii	Rroxscaffold_1G00067970 Rroxscaffold_6G00429440
rosa_rugosa	Rorug04G0436800 Rorug04G0436900
rosa_samantha	Rh2BG387100 Rh3BG044100 Rh3DG043600 Rh5AG065600 Rh5BG063100 Rh5CG073300 Rh5DG063100
rosa_wichuraiana	Rw3G003270 Rw5G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	298
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	75
AluBI	AGCT	3 cut(s)	205, 236, 275
AluI	AGCT	3 cut(s)	205, 236, 275
Alw21I	GWGCWC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	182
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp718I	GGTACC	1 cut(s)	298
AsuII	TTCGAA	1 cut(s)	44
AxyI	CCTNAGG	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	238
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	1 cut(s)	160
BclI	TGATCA	1 cut(s)	139
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	33
Bpu14I	TTCGAA	1 cut(s)	44
Bsa29I	ATCGAT	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	122
BsaWI	WCCGGW	1 cut(s)	301
Bse21I	CCTNAGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	333
BseXI	GCAGC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	334
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	302
BsmI	GAATGC	1 cut(s)	34
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp143I	GATC	4 cut(s)	20, 139, 288, 331
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	300
BspMAI	CTGCAG	1 cut(s)	178
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	4 cut(s)	20, 139, 288, 331
BssT1I	CCWWGG	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	3 cut(s)	15, 59, 129
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	4 cut(s)	23, 142, 291, 334
BstMBI	GATC	4 cut(s)	20, 139, 288, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	59
BsuTUI	ATCGAT	1 cut(s)	334
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	245
ClaI	ATCGAT	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	3 cut(s)	143, 230, 254
CviJI	RGCY	6 cut(s)	54, 71, 128, 205, 236, 275
CviKI_1	RGCY	6 cut(s)	54, 71, 128, 205, 236, 275
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	3 cut(s)	15, 59, 129
DpnI	GATC	4 cut(s)	22, 141, 290, 333
DpnII	GATC	4 cut(s)	20, 139, 288, 331
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	122
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	3 cut(s)	146, 233, 257
FaiI	YATR	5 cut(s)	144, 219, 231, 240, 255
FatI	CATG	3 cut(s)	142, 229, 253
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	1 cut(s)	174
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	3 cut(s)	146, 233, 257
HinfI	GANTC	2 cut(s)	116, 321
HpaII	CCGG	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	308
HpyCH4V	TGCA	2 cut(s)	176, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	3 cut(s)	15, 59, 129
Hsp92II	CATG	3 cut(s)	146, 233, 257
KpnI	GGTACC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	20, 139, 288, 331
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	3 cut(s)	46, 280, 315
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	51
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	4 cut(s)	22, 141, 290, 333
MboI	GATC	4 cut(s)	20, 139, 288, 331
MboII	GAAGA	2 cut(s)	33, 317
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	2 cut(s)	182, 347
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	7 cut(s)	68, 102, 140, 157, 262, 311, 352
MseI	TTAA	3 cut(s)	159, 285, 351
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	1 cut(s)	302
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	4 cut(s)	20, 139, 288, 331
NlaIII	CATG	3 cut(s)	146, 233, 257
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	86
NspV	TTCGAA	1 cut(s)	44
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
Psp124BI	GAGCTC	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	300
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	159, 285, 351
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	4 cut(s)	20, 139, 288, 331
SchI	GAGTC	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	5 cut(s)	151, 168, 207, 238, 277
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	174
SfuI	TTCGAA	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	182, 347
SspMI	CTAG	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	238
StyI	CCWWGG	1 cut(s)	122
TaqI	TCGA	3 cut(s)	44, 95, 334
TasI	AATT	2 cut(s)	182, 347
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	3 cut(s)	159, 285, 351
Tru9I	TTAA	3 cut(s)	159, 285, 351
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	2 cut(s)	92, 195
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	182
XspI	CTAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.