Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0005049

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGGTTCACAATCTAAGGGATCACATCTGTCGCATTCGTCTTCGAATACTAGCCCCCTCAGGCACTTGGCTTCAATGAAAGTCAGTGACAAATCGAGCAAATCAAAGAGGAAAGAATCGCCTTGGGCTAAGTATTTTGATCATGGAGGTGGGAGAGTTAATGAGGTGGATGCTGCAGATGAATTTAGTGTTGATTTGTCAAAGCTGTTTCTTGGTCATAAGTTTGCTCATGGAGCTCATAGCACGCTTTATCATGGGATTTACAATGAGGAAGCTGTTGCAGTTAAGATCGTCAGGGTACCGGAAGATGACGAAGGAGGAGTCTTGGCAGATCGATTGGAGAAACAATTTAACAGAGAGGTCAATCTTCTTTCTCGCCTCCACCATACAAATGTCATAAAGTTAGTTGCAGCTTGCAGAAAGCCTTCTGTTTATTGTGTAGTCACGGAATATTTAGATGAGGGTTCATTGAGGACTTACTTGCACAAACTTGAGTGCAAATCTCTTCCTTTAGGGAAAATAATTGCCATTGCCTTGGACATTGCTCGGGGAATGGAATACATCCACTCGCAAGGAGTCATTCACCGGGACCTTAAGCCTGAGAATGTTCTTATCGATAAAGACTTTAGGCTGAAAATTGCTGATTTTGGCATAGCATGTGAGGAGGCAAATTGTGATTCGTTGGCTGCTGAGCCTGGAACTTACCGTTGGATGGCCCCCGAAATGATTAAGCGTAAATCCTATGGGCGAAAGGTCGATGTCTACAGTTTTGGACTCATTTTGTGGGAACTAGTAGCCGGAACAATCCCTTATGAGGAGATGAATCCCATCCAAGTTGCTTTTGCAGTTGTGAATAAGAATTTGAGGCCACTTATCCCAAAGGACTGCCCAAGAGCTATGCGAGCCTTGATCGAGCAATGCTCGTTGTTGCAGCCGGATAAAAGGCCCGAGTTTTGGCAGGTTGTAAAGGTGTTAGAACAATTTGAGTCTTCCCTTGCTCGAGATGGAACATTGACGCTTGTACAGAATTTGACTTGCCAAGATCATAAAAAGGGGATGCTTCACTGGATTCAAAAGCTTGGTCAGCATCCAAATAGTTCACCCATGCCTAAATCCAAGTTTTTCAGTATGTTTCTTGTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

381

Amino Acids

42.99

Weight (kDa)

8.74

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	72 - 325	2.1e-58	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	77 - 323	1.5e-54	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58950
fragaria_vesca	FvH4_3g09060 FvH4_3g09060 FvH4_3g09060
malus_domestica	MD05G1338300.v1.1 MD10G1293400.v1.1
prunus_persica	Prupe.4G048400_v2.0.a1 Prupe.4G048400_v2.0.a1
pyrus_communis	pycom05g28970 pycom10g24540
rosa_chinensis	RchiOBHm_Chr3g0452421 RchiOBHm_Chr5g0008571
rosa_laevigata	RLG00000025604 RLG00000031584
rosa_multiflora	Rmu_co8323009.1_g000001 Rmu_sc0001665.1_g000020 Rmu_sc0011680.1_g000010
rosa_roxburghii	Rroxscaffold_1G00067970 Rroxscaffold_6G00429440
rosa_rugosa	Rorug04G0436800 Rorug04G0436900
rosa_samantha	Rh2BG387100 Rh3BG044100 Rh3DG043600 Rh5AG065600 Rh5BG063100 Rh5CG073300 Rh5DG063100
rosa_wichuraiana	Rw3G003270 Rw5G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	949
Acc65I	GGTACC	1 cut(s)	298
AccB1I	GGYRCC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	762
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	3 cut(s)	182, 859, 1027
AfaI	GTAC	2 cut(s)	300, 1023
AfiI	CCNNNNNNNGG	3 cut(s)	712, 814, 954
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	2 cut(s)	75, 1073
AhlI	ACTAGT	1 cut(s)	790
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	2 cut(s)	691, 723
AluBI	AGCT	6 cut(s)	205, 236, 275, 413, 896, 1078
AluI	AGCT	6 cut(s)	205, 236, 275, 413, 896, 1078
Alw21I	GWGCWC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	28
Ama87I	CYCGRG	3 cut(s)	546, 947, 999
AoxI	GGCC	3 cut(s)	714, 866, 944
ApeKI	GCWGC	4 cut(s)	173, 410, 686, 931
ApoI	RAATTY	3 cut(s)	182, 859, 1027
ArsI	GACNNNNNNTTYG	4 cut(s)	306, 338, 1066, 1098
Asp700I	GAANNNNTTC	1 cut(s)	424
Asp718I	GGTACC	1 cut(s)	298
AspS9I	GGNCC	3 cut(s)	589, 715, 945
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	575, 1092
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	3 cut(s)	546, 947, 999
AvaII	GGWCC	1 cut(s)	589
AxyI	CCTNAGG	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	298
BanII	GRGCYC	1 cut(s)	238
BbsI	GAAGAC	2 cut(s)	33, 981
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	160, 422, 673, 943
BccI	CCATC	3 cut(s)	706, 836, 998
BciT130I	CCWGG	1 cut(s)	696
BclI	TGATCA	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	587
BcuI	ACTAGT	1 cut(s)	790
BfaI	CTAG	2 cut(s)	51, 791
BfmI	CTRYAG	2 cut(s)	174, 763
BfrI	CTTAAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	949
BisI	GCNGC	4 cut(s)	174, 411, 687, 932
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	4 cut(s)	175, 412, 688, 933
Bme1390I	CCNGG	2 cut(s)	587, 696
Bme18I	GGWCC	1 cut(s)	589
BmeT110I	CYCGRG	3 cut(s)	546, 947, 999
BmgT120I	GGNCC	3 cut(s)	589, 715, 945
BmiI	GGNNCC	3 cut(s)	300, 590, 717
BmrFI	CCNGG	2 cut(s)	587, 696
BmsI	GCATC	3 cut(s)	160, 1047, 1096
BpiI	GAAGAC	2 cut(s)	33, 981
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
Bpu1102I	GCTNAGC	1 cut(s)	690
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	587
Bsa29I	ATCGAT	2 cut(s)	334, 615
BsaJI	CCNNGG	2 cut(s)	122, 534
BsaWI	WCCGGW	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	3 cut(s)	712, 814, 954
Bse1I	ACTGG	1 cut(s)	1070
Bse21I	CCTNAGG	1 cut(s)	59
Bse3DI	GCAATG	3 cut(s)	528, 540, 923
BseBI	CCWGG	1 cut(s)	696
BseCI	ATCGAT	2 cut(s)	334, 615
BseDI	CCNNGG	2 cut(s)	122, 534
BseGI	GGATG	6 cut(s)	175, 561, 717, 828, 1062, 1087
BseLI	CCNNNNNNNGG	3 cut(s)	712, 814, 954
BseMI	GCAATG	3 cut(s)	528, 540, 923
BseMII	CTCAG	3 cut(s)	73, 591, 681
BseNI	ACTGG	1 cut(s)	1070
BseRI	GAGGAG	3 cut(s)	333, 677, 830
BseXI	GCAGC	4 cut(s)	160, 422, 673, 943
BshFI	GGCC	3 cut(s)	716, 868, 946
BshNI	GGYRCC	1 cut(s)	298
BshVI	ATCGAT	2 cut(s)	334, 615
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	3 cut(s)	546, 947, 999
BsiSI	CCGG	4 cut(s)	302, 586, 798, 935
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	3 cut(s)	712, 814, 954
BsmFI	GGGAC	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	3 cut(s)	716, 868, 946
BsoBI	CYCGRG	3 cut(s)	546, 947, 999
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp1407I	TGTACA	1 cut(s)	1021
Bsp143I	GATC	6 cut(s)	20, 139, 288, 331, 909, 1042
Bsp1720I	GCTNAGC	1 cut(s)	690
BspANI	GGCC	3 cut(s)	716, 868, 946
BspCNI	CTCAG	3 cut(s)	72, 592, 682
BspDI	ATCGAT	2 cut(s)	334, 615
BspLI	GGNNCC	3 cut(s)	300, 590, 717
BspMAI	CTGCAG	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	949
BspPI	GGATC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	44
BspT107I	GGYRCC	1 cut(s)	298
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	3 cut(s)	528, 540, 923
BsrGI	TGTACA	1 cut(s)	1021
BsrI	ACTGG	1 cut(s)	1070
BssECI	CCNNGG	2 cut(s)	122, 534
BssMI	GATC	6 cut(s)	20, 139, 288, 331, 909, 1042
BssT1I	CCWWGG	2 cut(s)	122, 534
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	707, 767
Bst6I	CTCTTC	1 cut(s)	510
BstAFI	CTTAAG	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	1021
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	3 cut(s)	245, 415, 903
BstDEI	CTNAG	5 cut(s)	15, 59, 129, 600, 690
BstF5I	GGATG	6 cut(s)	175, 561, 717, 828, 1062, 1087
BstKTI	GATC	6 cut(s)	23, 142, 291, 334, 912, 1045
BstMBI	GATC	6 cut(s)	20, 139, 288, 331, 909, 1042
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 902, 1084
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	585, 694
BstSFI	CTRYAG	2 cut(s)	174, 763
BstV1I	GCAGC	4 cut(s)	160, 422, 673, 943
BstV2I	GAAGAC	2 cut(s)	33, 981
BstXI	CCANNNNNNTGG	1 cut(s)	535
Bsu15I	ATCGAT	2 cut(s)	334, 615
Bsu36I	CCTNAGG	1 cut(s)	59
BsuRI	GGCC	3 cut(s)	716, 868, 946
BsuTUI	ATCGAT	2 cut(s)	334, 615
BtsCI	GGATG	6 cut(s)	175, 561, 717, 828, 1062, 1087
BtsIMutI	CAGTG	2 cut(s)	91, 1063
BveI	ACCTGC	1 cut(s)	949
Cac8I	GCNNGC	3 cut(s)	245, 415, 903
Cfr13I	GGNCC	3 cut(s)	589, 715, 945
ClaI	ATCGAT	2 cut(s)	334, 615
CseI	GACGC	1 cut(s)	1024
Csp6I	GTAC	2 cut(s)	299, 1022
CviAII	CATG	5 cut(s)	143, 230, 254, 657, 1105
CviQI	GTAC	2 cut(s)	299, 1022
DdeI	CTNAG	5 cut(s)	15, 59, 129, 600, 690
DpnI	GATC	6 cut(s)	22, 141, 290, 333, 911, 1044
DpnII	GATC	6 cut(s)	20, 139, 288, 331, 909, 1042
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	122, 534
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	236
Eco81I	CCTNAGG	1 cut(s)	59
Eco88I	CYCGRG	3 cut(s)	546, 947, 999
EcoICRI	GAGCTC	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	2 cut(s)	122, 534
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	2 cut(s)	122, 534
FaeI	CATG	5 cut(s)	146, 233, 257, 660, 1108
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	5 cut(s)	142, 229, 253, 656, 1104
FbaI	TGATCA	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	4 cut(s)	174, 411, 687, 932
FokI	GGATG	6 cut(s)	182, 548, 724, 815, 1069, 1074
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	4 cut(s)	174, 411, 687, 932
FspBI	CTAG	2 cut(s)	51, 791
GluI	GCNGC	4 cut(s)	174, 411, 687, 932
HaeIII	GGCC	3 cut(s)	716, 868, 946
HapII	CCGG	4 cut(s)	302, 586, 798, 935
HgaI	GACGC	1 cut(s)	1024
Hin1II	CATG	5 cut(s)	146, 233, 257, 660, 1108
HindIII	AAGCTT	1 cut(s)	1076
HinfI	GANTC	8 cut(s)	116, 321, 576, 677, 774, 823, 986, 1069
HpaII	CCGG	4 cut(s)	302, 586, 798, 935
HphI	GGTGA	2 cut(s)	575, 1092
Hpy166II	GTNNAC	3 cut(s)	8, 763, 1100
Hpy188III	TCNNGA	1 cut(s)	1001
Hpy8I	GTNNAC	3 cut(s)	8, 763, 1100
HpyAV	CCTTC	2 cut(s)	308, 435
HpyCH4III	ACNGT	2 cut(s)	707, 767
HpyCH4V	TGCA	8 cut(s)	176, 281, 410, 417, 484, 498, 845, 931
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 902, 1084
HpyF3I	CTNAG	5 cut(s)	15, 59, 129, 600, 690
Hsp92II	CATG	5 cut(s)	146, 233, 257, 660, 1108
KpnI	GGTACC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	6 cut(s)	20, 139, 288, 331, 909, 1042
LmnI	GCTCC	1 cut(s)	233
Lsp1109I	GCAGC	4 cut(s)	160, 422, 673, 943
LweI	GCATC	3 cut(s)	160, 1047, 1096
MaeI	CTAG	2 cut(s)	51, 791
MaeIII	GTNAC	3 cut(s)	86, 442, 1138
MalI	GATC	6 cut(s)	22, 141, 290, 333, 911, 1044
MboI	GATC	6 cut(s)	20, 139, 288, 331, 909, 1042
MboII	GAAGA	5 cut(s)	33, 317, 359, 497, 981
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	8 cut(s)	182, 347, 522, 636, 670, 859, 980, 1027
MlyI	GAGTC	4 cut(s)	330, 585, 768, 995
MmeI	TCCRAC	1 cut(s)	689
MroXI	GAANNNNTTC	1 cut(s)	424
MseI	TTAA	5 cut(s)	159, 285, 351, 594, 729
MslI	CAYNNNNRTG	2 cut(s)	147, 390
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	4 cut(s)	302, 586, 798, 935
MspR9I	CCNGG	2 cut(s)	587, 696
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	3 cut(s)	233, 902, 1084
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	6 cut(s)	20, 139, 288, 331, 909, 1042
NlaIII	CATG	5 cut(s)	146, 233, 257, 660, 1108
NlaIV	GGNNCC	3 cut(s)	300, 590, 717
NmuCI	GTSAC	3 cut(s)	86, 442, 1138
NspI	RCATGY	1 cut(s)	660
NspV	TTCGAA	1 cut(s)	44
PaeR7I	CTCGAG	1 cut(s)	999
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	424
PfeI	GAWTC	4 cut(s)	116, 677, 823, 1069
PkrI	GCNGC	4 cut(s)	175, 412, 688, 933
PleI	GAGTC	4 cut(s)	329, 584, 768, 994
PpsI	GAGTC	4 cut(s)	329, 584, 768, 994
PpuMI	RGGWCCY	1 cut(s)	589
Psp124BI	GAGCTC	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	3 cut(s)	300, 590, 717
PspPI	GGNCC	3 cut(s)	589, 715, 945
PspPPI	RGGWCCY	1 cut(s)	589
PstI	CTGCAG	1 cut(s)	178
RsaI	GTAC	2 cut(s)	300, 1023
RsaNI	GTAC	2 cut(s)	299, 1022
RseI	CAYNNNNRTG	2 cut(s)	147, 390
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	5 cut(s)	159, 285, 351, 594, 729
SatI	GCNGC	4 cut(s)	174, 411, 687, 932
Sau3AI	GATC	6 cut(s)	20, 139, 288, 331, 909, 1042
Sau96I	GGNCC	3 cut(s)	589, 715, 945
SchI	GAGTC	4 cut(s)	330, 585, 768, 995
ScrFI	CCNGG	2 cut(s)	587, 696
SduI	GDGCHC	1 cut(s)	238
SfaNI	GCATC	3 cut(s)	160, 1047, 1096
SfcI	CTRYAG	2 cut(s)	174, 763
Sfr274I	CTCGAG	1 cut(s)	999
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	589
SlaI	CTCGAG	1 cut(s)	999
SmiMI	CAYNNNNRTG	2 cut(s)	147, 390
SmlI	CTYRAG	3 cut(s)	491, 593, 999
SmoI	CTYRAG	3 cut(s)	491, 593, 999
SpeI	ACTAGT	1 cut(s)	790
Sse9I	AATT	8 cut(s)	182, 347, 522, 636, 670, 859, 980, 1027
SspI	AATATT	1 cut(s)	452
SspMI	CTAG	2 cut(s)	51, 791
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	2 cut(s)	585, 694
StyI	CCWWGG	2 cut(s)	122, 534
TaaI	ACNGT	2 cut(s)	707, 767
TaqI	TCGA	7 cut(s)	44, 95, 334, 615, 756, 912, 1000
TasI	AATT	8 cut(s)	182, 347, 522, 636, 670, 859, 980, 1027
TatI	WGTACW	1 cut(s)	1021
TfiI	GAWTC	4 cut(s)	116, 677, 823, 1069
Tru1I	TTAA	5 cut(s)	159, 285, 351, 594, 729
Tru9I	TTAA	5 cut(s)	159, 285, 351, 594, 729
TscAI	CASTG	2 cut(s)	91, 1070
TseFI	GTSAC	3 cut(s)	86, 442, 1138
TseI	GCWGC	4 cut(s)	173, 410, 686, 931
Tsp45I	GTSAC	3 cut(s)	86, 442, 1138
TspDTI	ATGAA	4 cut(s)	92, 195, 456, 836
TspGWI	ACGGA	1 cut(s)	461
TspRI	CASTG	2 cut(s)	91, 1070
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	589
XapI	RAATTY	3 cut(s)	182, 859, 1027
XceI	RCATGY	1 cut(s)	660
XhoI	CTCGAG	1 cut(s)	999
XmiI	GTMKAC	1 cut(s)	762
XmnI	GAANNNNTTC	1 cut(s)	424
XspI	CTAG	2 cut(s)	51, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.