Rh5BG063100

serine threonine-protein kinase HT1-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
5179089 .. 5182726
3638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG063100.1

Sequence Viewer

Length: 1278 bp
ATGGAGGAAGAGGCTTATTCTTGGATTAGGAGAACGAAATTCTCTCATCGGTTTGATTCACATCGGTATGATGATTCAAGATTGGCCTCAATTCCTTTAACCTTTCAGGATTTTCAAAAAGAGCAGCTTTCAGGGTTGAAGTCCAGGCCTGTAGCAGCAGCAACACCAGCAGTAGCTCCTTCTAGGCAGCAGAAGTCGAGCCCCAGTAATTCAAAGATTCAGAGGAACAGTCGTTTGTCTTCACCTATTGGTCGAAATCCACTTGTCAACAAGCAGAGATCTTTGTCCCCTTTGCCGGCGAGCAACCTTAGTGATGTGTTTAAAGAAGCTCAGACTGATACGAAGAGGTTTTCAACACCACACCCTAGGAGAGTACAAACAGATAAGGGAATTATGGGGAAGTTGTTCAGGAAGGATTCACAATCTAAGGGATCACACCTGCCGCATTCGTCTTTGAATACTAGCCCCCTCAGGCACTTGTCTTCAATGAAAGTCGGTGACAAAACGAGCAAATCAAAGAGGAAGGAATCGCCTTGGGCTAAGTATTTTGATCATGGAGGTGGGAGAGTGAATGCAGTGGATGCTGCAGATGAATTTAGTGTTGATTTGTCAAAGTTGTTTCTTGGTCTGAAGTTTGCTCATGGAGCACATAGCAGGCTTTATCATGGGATTTACAATGAGGAAGCTGTTGCAGTTAAGATCATCAGGGTACCAGAAGATGATGAAGGTGGAGTCTTGGCAGCTCGATTGGAGAAACAATTTAACAGAGAGGTTAATCTTCTTTCTCGCCTCCACCATAGAAATATCATAAAGTTCGTTGCAGCTTGCAGAAAGCCTCCTGTTTATTGTGTAGTCACAGAATATTTAGATGAGGGTTCCTTGAGGGCTTACTTGCACAAACTTGAGTGCAAATCTCTTCCTTTAGAGAAACTAATTGCCATTGCCTTGGACATTGCTCGGGGAATGGAATACATCCACTCACAAGGAGTCATTCACCGGGACCTTAAGCCTGAGAATGTTCTTATTGATAAAGACTTTAGGCTGAAAATTGCTGATTTTGGCATAGCATGTGAGGAGGCATACTGTGATTCATTGGCCGATGACCCTGGAACCTACCGTTGGATGGCCCCCGAAATGATTAAGCGTAAATCCTATGGGCGAAGGGTTGATGTCTACAGTTTTGGACTCGTTTTGTGGGAACTAGTAGCCGGAGCAATCCCTTATGAGGAGATGAATCCCATTCAAGCTGCTTTTGCAGTTGTGAATAAGGTATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

48.02

Weight (kDa)

9.46

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 211 - 418 1.5e-48 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 215 - 413 2.1e-49 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 447
Acc36I ACCTGC 1 cut(s) 447
Acc65I GGTACC 1 cut(s) 709
AccB1I GGYRCC 1 cut(s) 709
AccI GTMKAC 1 cut(s) 1173
AciI CCGC 1 cut(s) 443
AclWI GGATC 1 cut(s) 439
AcoI YGGCCR 1 cut(s) 1095
AcsI RAATTY 2 cut(s) 38, 593
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 2 cut(s) 375, 711
AfiI CCNNNNNNNGG 4 cut(s) 295, 1119, 1123, 1225
AflII CTTAAG 1 cut(s) 1004
AgsI TTSAA 8 cut(s) 78, 116, 139, 213, 354, 457, 486, 1244
AhlI ACTAGT 1 cut(s) 1201
AjnI CCWGG 2 cut(s) 143, 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 1102, 1134
AluBI AGCT 7 cut(s) 127, 176, 329, 686, 743, 824, 1247
AluI AGCT 7 cut(s) 127, 176, 329, 686, 743, 824, 1247
Alw21I GWGCWC 1 cut(s) 649
AlwI GGATC 1 cut(s) 439
Ama87I CYCGRG 1 cut(s) 957
AoxI GGCC 4 cut(s) 84, 146, 1095, 1125
ApeKI GCWGC 8 cut(s) 124, 155, 158, 187, 584, 740, 821, 1247
ApoI RAATTY 2 cut(s) 38, 593
Asp700I GAANNNNTTC 1 cut(s) 404
Asp718I GGTACC 1 cut(s) 709
AspA2I CCTAGG 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 1000, 1126
AsuC2I CCSGG 1 cut(s) 998
AsuHPI GGTGA 3 cut(s) 234, 509, 986
AvaI CYCGRG 1 cut(s) 957
AvaII GGWCC 1 cut(s) 1000
AvrII CCTAGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 470
BanI GGYRCC 1 cut(s) 709
BanII GRGCYC 1 cut(s) 203
BbsI GAAGAC 2 cut(s) 231, 474
Bbv12I GWGCWC 1 cut(s) 649
BbvI GCAGC 8 cut(s) 136, 167, 170, 199, 571, 752, 833, 1234
BccI CCATC 1 cut(s) 1117
BciT130I CCWGG 2 cut(s) 145, 1107
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 998
BcuI ACTAGT 1 cut(s) 1201
BfaI CTAG 4 cut(s) 183, 366, 462, 1202
BfmI CTRYAG 3 cut(s) 150, 585, 1174
BfrI CTTAAG 1 cut(s) 1004
BfuAI ACCTGC 1 cut(s) 447
BglII AGATCT 1 cut(s) 278
BisI GCNGC 9 cut(s) 125, 156, 159, 188, 443, 585, 741, 822, 1248
BlnI CCTAGG 1 cut(s) 365
BlsI GCNGC 9 cut(s) 126, 157, 160, 189, 444, 586, 742, 823, 1249
Bme1390I CCNGG 3 cut(s) 145, 998, 1107
Bme18I GGWCC 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 957
BmgT120I GGNCC 2 cut(s) 1000, 1126
BmiI GGNNCC 5 cut(s) 711, 877, 1001, 1111, 1128
BmrFI CCNGG 3 cut(s) 145, 998, 1107
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 1 cut(s) 571
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 2 cut(s) 231, 474
BpuEI CTTGAG 2 cut(s) 901, 923
BpuMI CCSGG 1 cut(s) 998
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 365, 533, 945, 1105
Bsc4I CCNNNNNNNGG 4 cut(s) 295, 1119, 1123, 1225
Bse118I RCCGGY 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 204
Bse21I CCTNAGG 1 cut(s) 470
Bse3DI GCAATG 2 cut(s) 939, 951
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 2 cut(s) 145, 1107
BseDI CCNNGG 4 cut(s) 365, 533, 945, 1105
BseGI GGATG 3 cut(s) 586, 972, 1128
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 4 cut(s) 295, 1119, 1123, 1225
BseMI GCAATG 2 cut(s) 939, 951
BseMII CTCAG 3 cut(s) 344, 484, 1002
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 2 cut(s) 1088, 1241
BseXI GCAGC 8 cut(s) 136, 167, 170, 199, 571, 752, 833, 1234
BshFI GGCC 4 cut(s) 86, 148, 1097, 1127
BshNI GGYRCC 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 649
BsiHKCI CYCGRG 1 cut(s) 957
BsiSI CCGG 3 cut(s) 296, 997, 1209
BslFI GGGAC 2 cut(s) 271, 1013
BslI CCNNNNNNNGG 4 cut(s) 295, 1119, 1123, 1225
BsmFI GGGAC 2 cut(s) 271, 1013
BsmI GAATGC 2 cut(s) 445, 577
BsnI GGCC 4 cut(s) 86, 148, 1097, 1127
BsoBI CYCGRG 1 cut(s) 957
Bsp1286I GDGCHC 2 cut(s) 203, 649
Bsp143I GATC 4 cut(s) 278, 431, 550, 699
BspACI CCGC 1 cut(s) 443
BspANI GGCC 4 cut(s) 86, 148, 1097, 1127
BspCNI CTCAG 3 cut(s) 343, 483, 1003
BspLI GGNNCC 5 cut(s) 711, 877, 1001, 1111, 1128
BspMAI CTGCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 447
BspPI GGATC 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 709
BspTI CTTAAG 1 cut(s) 1004
BsrDI GCAATG 2 cut(s) 939, 951
BsrFI RCCGGY 1 cut(s) 295
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 295
BssECI CCNNGG 4 cut(s) 365, 533, 945, 1105
BssMI GATC 4 cut(s) 278, 431, 550, 699
BssT1I CCWWGG 3 cut(s) 365, 533, 945
Bst2UI CCWGG 2 cut(s) 145, 1107
Bst4CI ACNGT 4 cut(s) 230, 1085, 1118, 1178
Bst6I CTCTTC 3 cut(s) 3, 338, 921
BstAFI CTTAAG 1 cut(s) 1004
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 4 cut(s) 297, 301, 656, 826
BstDEI CTNAG 6 cut(s) 308, 330, 426, 470, 540, 1011
BstF5I GGATG 3 cut(s) 586, 972, 1128
BstKTI GATC 4 cut(s) 281, 434, 553, 702
BstMBI GATC 4 cut(s) 278, 431, 550, 699
BstMWI GCNNNNNNNGC 4 cut(s) 167, 581, 644, 1253
BstNI CCWGG 2 cut(s) 145, 1107
BstNSI RCATGY 1 cut(s) 1071
BstSCI CCNGG 3 cut(s) 143, 996, 1105
BstSFI CTRYAG 3 cut(s) 150, 585, 1174
BstV1I GCAGC 8 cut(s) 136, 167, 170, 199, 571, 752, 833, 1234
BstV2I GAAGAC 2 cut(s) 231, 474
BstX2I RGATCY 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 946
BstYI RGATCY 1 cut(s) 278
Bsu36I CCTNAGG 1 cut(s) 470
BsuRI GGCC 4 cut(s) 86, 148, 1097, 1127
BtsCI GGATG 3 cut(s) 586, 972, 1128
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 582
BveI ACCTGC 1 cut(s) 447
Cac8I GCNNGC 4 cut(s) 297, 301, 656, 826
Cfr10I RCCGGY 1 cut(s) 295
Cfr13I GGNCC 2 cut(s) 1000, 1126
Csp6I GTAC 2 cut(s) 374, 710
CviAII CATG 4 cut(s) 554, 641, 665, 1068
CviQI GTAC 2 cut(s) 374, 710
DdeI CTNAG 6 cut(s) 308, 330, 426, 470, 540, 1011
DpnI GATC 4 cut(s) 280, 433, 552, 701
DpnII GATC 4 cut(s) 278, 431, 550, 699
DraI TTTAAA 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 1095
Eam1104I CTCTTC 3 cut(s) 3, 338, 921
EarI CTCTTC 3 cut(s) 3, 338, 921
Eco130I CCWWGG 3 cut(s) 365, 533, 945
Eco147I AGGCCT 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 1000
Eco57I CTGAAG 1 cut(s) 650
Eco81I CCTNAGG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 957
EcoO109I RGGNCCY 1 cut(s) 1000
EcoRII CCWGG 2 cut(s) 143, 1105
EcoT14I CCWWGG 3 cut(s) 365, 533, 945
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 3 cut(s) 365, 533, 945
FaeI CATG 4 cut(s) 557, 644, 668, 1071
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 2 cut(s) 271, 1013
FatI CATG 4 cut(s) 553, 640, 664, 1067
FbaI TGATCA 1 cut(s) 550
FblI GTMKAC 1 cut(s) 1173
Fnu4HI GCNGC 9 cut(s) 125, 156, 159, 188, 443, 585, 741, 822, 1248
FokI GGATG 3 cut(s) 593, 959, 1135
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 9 cut(s) 125, 156, 159, 188, 443, 585, 741, 822, 1248
FspBI CTAG 4 cut(s) 183, 366, 462, 1202
GluI GCNGC 9 cut(s) 125, 156, 159, 188, 443, 585, 741, 822, 1248
HaeIII GGCC 4 cut(s) 86, 148, 1097, 1127
HapII CCGG 3 cut(s) 296, 997, 1209
Hin1II CATG 4 cut(s) 557, 644, 668, 1071
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HpaII CCGG 3 cut(s) 296, 997, 1209
HphI GGTGA 3 cut(s) 234, 509, 986
Hpy166II GTNNAC 2 cut(s) 268, 1174
Hpy188I TCNGA 3 cut(s) 222, 333, 630
Hpy188III TCNNGA 3 cut(s) 78, 107, 409
Hpy8I GTNNAC 2 cut(s) 268, 1174
HpyAV CCTTC 5 cut(s) 189, 406, 517, 719, 1155
HpyCH4III ACNGT 4 cut(s) 230, 1085, 1118, 1178
HpyCH4V TGCA 8 cut(s) 575, 587, 692, 821, 828, 895, 909, 1256
HpyF10VI GCNNNNNNNGC 4 cut(s) 167, 581, 644, 1253
HpyF3I CTNAG 6 cut(s) 308, 330, 426, 470, 540, 1011
Hsp92II CATG 4 cut(s) 557, 644, 668, 1071
KpnI GGTACC 1 cut(s) 713
KroI GCCGGC 1 cut(s) 295
KroNI GCCGGC 1 cut(s) 297
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 4 cut(s) 278, 431, 550, 699
LmnI GCTCC 3 cut(s) 181, 644, 1211
Lsp1109I GCAGC 8 cut(s) 136, 167, 170, 199, 571, 752, 833, 1234
LweI GCATC 1 cut(s) 571
MaeI CTAG 4 cut(s) 183, 366, 462, 1202
MaeIII GTNAC 2 cut(s) 497, 853
MalI GATC 4 cut(s) 280, 433, 552, 701
MboI GATC 4 cut(s) 278, 431, 550, 699
MboII GAAGA 7 cut(s) 20, 231, 355, 474, 728, 770, 908
MflI RGATCY 1 cut(s) 278
MhlI GDGCHC 2 cut(s) 203, 649
MluCI AATT 8 cut(s) 38, 90, 208, 390, 593, 758, 933, 1047
MlyI GAGTC 3 cut(s) 741, 996, 1179
MmeI TCCRAC 1 cut(s) 1100
MroNI GCCGGC 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 404
MseI TTAA 7 cut(s) 98, 321, 696, 762, 774, 1005, 1140
MslI CAYNNNNRTG 2 cut(s) 66, 558
MspCI CTTAAG 1 cut(s) 1004
MspI CCGG 3 cut(s) 296, 997, 1209
MspR9I CCNGG 3 cut(s) 145, 998, 1107
Mva1269I GAATGC 2 cut(s) 445, 577
MvaI CCWGG 2 cut(s) 145, 1107
MwoI GCNNNNNNNGC 4 cut(s) 167, 581, 644, 1253
NaeI GCCGGC 1 cut(s) 297
NciI CCSGG 1 cut(s) 998
NdeII GATC 4 cut(s) 278, 431, 550, 699
NgoMIV GCCGGC 1 cut(s) 295
NlaIII CATG 4 cut(s) 557, 644, 668, 1071
NlaIV GGNNCC 5 cut(s) 711, 877, 1001, 1111, 1128
NmuCI GTSAC 2 cut(s) 497, 853
NspI RCATGY 1 cut(s) 1071
PaqCI CACCTGC 1 cut(s) 447
PceI AGGCCT 1 cut(s) 148
PctI GAATGC 2 cut(s) 445, 577
PdiI GCCGGC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 404
PfeI GAWTC 7 cut(s) 56, 74, 217, 416, 527, 1088, 1234
PkrI GCNGC 9 cut(s) 126, 157, 160, 189, 444, 586, 742, 823, 1249
PleI GAGTC 3 cut(s) 740, 995, 1179
PpsI GAGTC 3 cut(s) 740, 995, 1179
PpuMI RGGWCCY 1 cut(s) 1000
Psp5II RGGWCCY 1 cut(s) 1000
Psp6I CCWGG 2 cut(s) 143, 1105
PspGI CCWGG 2 cut(s) 143, 1105
PspN4I GGNNCC 5 cut(s) 711, 877, 1001, 1111, 1128
PspPI GGNCC 2 cut(s) 1000, 1126
PspPPI RGGWCCY 1 cut(s) 1000
PstI CTGCAG 1 cut(s) 589
PsuI RGATCY 1 cut(s) 278
RsaI GTAC 2 cut(s) 375, 711
RsaNI GTAC 2 cut(s) 374, 710
RseI CAYNNNNRTG 2 cut(s) 66, 558
SaqAI TTAA 7 cut(s) 98, 321, 696, 762, 774, 1005, 1140
SatI GCNGC 9 cut(s) 125, 156, 159, 188, 443, 585, 741, 822, 1248
Sau3AI GATC 4 cut(s) 278, 431, 550, 699
Sau96I GGNCC 2 cut(s) 1000, 1126
SchI GAGTC 3 cut(s) 741, 996, 1179
ScrFI CCNGG 3 cut(s) 145, 998, 1107
SduI GDGCHC 2 cut(s) 203, 649
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 3 cut(s) 150, 585, 1174
SinI GGWCC 1 cut(s) 1000
SmiMI CAYNNNNRTG 2 cut(s) 66, 558
SmlI CTYRAG 3 cut(s) 880, 902, 1004
SmoI CTYRAG 3 cut(s) 880, 902, 1004
SpeI ACTAGT 1 cut(s) 1201
Sse9I AATT 8 cut(s) 38, 90, 208, 390, 593, 758, 933, 1047
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 1 cut(s) 443
SspI AATATT 1 cut(s) 863
SspMI CTAG 4 cut(s) 183, 366, 462, 1202
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 3 cut(s) 143, 996, 1105
StyI CCWWGG 3 cut(s) 365, 533, 945
TaaI ACNGT 4 cut(s) 230, 1085, 1118, 1178
TaqI TCGA 3 cut(s) 197, 253, 745
TasI AATT 8 cut(s) 38, 90, 208, 390, 593, 758, 933, 1047
TatI WGTACW 1 cut(s) 373
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 7 cut(s) 56, 74, 217, 416, 527, 1088, 1234
Tru1I TTAA 7 cut(s) 98, 321, 696, 762, 774, 1005, 1140
Tru9I TTAA 7 cut(s) 98, 321, 696, 762, 774, 1005, 1140
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 2 cut(s) 497, 853
TseI GCWGC 8 cut(s) 124, 155, 158, 187, 584, 740, 821, 1247
Tsp45I GTSAC 2 cut(s) 497, 853
TspDTI ATGAA 5 cut(s) 503, 606, 738, 1080, 1247
TspRI CASTG 1 cut(s) 582
Vha464I CTTAAG 1 cut(s) 1004
VpaK11BI GGWCC 1 cut(s) 1000
XapI RAATTY 2 cut(s) 38, 593
XceI RCATGY 1 cut(s) 1071
XmaJI CCTAGG 1 cut(s) 365
XmiI GTMKAC 1 cut(s) 1173
XmnI GAANNNNTTC 1 cut(s) 404
XspI CTAG 4 cut(s) 183, 366, 462, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.