Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005049

Physical Location & Seq

Genomic Coordinates Forward (+)

5463150 .. 5466917

Gene Structure 3768 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG073300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAGGAAGAGGCTTATTCTTGGATTAGGAGAACGAAATTCTCTCATCGGTTTGATTCACATCGGTATGATGATTCAAGATTGGCCTCAATTCCTTTAACCTTCCAGGATTTTCAAAAAGAGCAGCTCGCAGGGTTGAAGTCAAGGCCTGTAGCAGCAGCAACACCAGCAGTAGCTCCTTCTAGGCAGAAGTCGAGCCCCAGTAATTCAAAGATTCAGAGGAACAGTCGTCTGTCTTCACCTATTGGTCGACATCCATTTGTCAACAAGCAGAGATCTTTGTCTCCTCTGCCGGCGAGCAACATTAGTGATGTGTTTAAAGAAGCTCAGACTGATACGAAGAGGTTTTCAACACCACACCCTAGGAGAGTACAATCAGATAAGGGAATTATGGGCAAGTTGTTCAGGAAGGATTCACTATCTAAGGGATCACACCCGCCGCATTCGTCTTCAAATACTAGCCCCCTCAGGCACTTGTCTTCAATGAAAGTCGGTGACAAAACGAGCAAATCAAAGAGGAAGGAATCGCCTTGGGCTAAGTATTTTGATCATGGAGGTGGGAGAGTGAATGCAGTGGATGCTGCAGATGAATTTAGTGTTGATTTGTCAAAGTTGTTTCTTGGTCTGAAGTTTGCTCATGGAGCACATAGCAGGCTTTATCATGGGATTTACAATGAGGAAGCTGTTGCAGTTAAGATCATCAGGGTACCAGAAGATGATGAAGGTGGAGTCTTGGCAGCTCGATTGGAGAAACAATTTAACAAAGAGGTTAATCTTCTTTCTCGCCTCCACCATAGAAATATCATAAAGTTCGTTGCAGCTTGCAGAAAGCCTCCTGTTTATTGTGTAGTCACAGAATATTTAGATGAGGGTTCCTTGAGGGCTTACTTGCACAAACTTGAGTGCAAATCTCTTCCTTTAGAGAAACTAATTGCCATTGCCTTGGACATTGCTCGGGGAATGGAATACATCCACTCGCAAGGAGTCATTCACCGGGACCTTAAGCCTGAGAATGTTCTTATTGATAAAGACTTTAGGCTGAAAATTGCTGATTTTGGCATAGCATGTGAGGAGGCATACTGTGATTCATTGGCTGATGACCCTGGAACTTACCGTTGGATGGCCCCCGAAATGATTAAGCGTAAATCCTATGGGCGAAAGGTTGATGTCTACAGTTTTGGACTCGTTTTGTGGGAACTAGTAGCCGGAACAATCCCTTATGAGGAGATGAATCCCATTCAAGCGGCTTTTGCAGTTGTGAATAAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

424

Amino Acids

47.84

Weight (kDa)

9.44

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	210 - 417	6.7e-49	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	214 - 412	1e-49	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005049)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58950
fragaria_vesca	FvH4_3g09060 FvH4_3g09060 FvH4_3g09060
malus_domestica	MD05G1338300.v1.1 MD10G1293400.v1.1
prunus_persica	Prupe.4G048400_v2.0.a1 Prupe.4G048400_v2.0.a1
pyrus_communis	pycom05g28970 pycom10g24540
rosa_chinensis	RchiOBHm_Chr3g0452421 RchiOBHm_Chr5g0008571
rosa_laevigata	RLG00000025604 RLG00000031584
rosa_multiflora	Rmu_co8323009.1_g000001 Rmu_sc0001665.1_g000020 Rmu_sc0011680.1_g000010
rosa_roxburghii	Rroxscaffold_1G00067970 Rroxscaffold_6G00429440
rosa_rugosa	Rorug04G0436800 Rorug04G0436900
rosa_samantha	Rh2BG387100 Rh3BG044100 Rh3DG043600 Rh5AG065600 Rh5BG063100 Rh5CG073300 Rh5DG063100
rosa_wichuraiana	Rw3G003270 Rw5G006330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	706
AccB1I	GGYRCC	1 cut(s)	706
AccI	GTMKAC	2 cut(s)	250, 1170
AciI	CCGC	3 cut(s)	437, 440, 1244
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	38, 590
AcuI	CTGAAG	1 cut(s)	647
AfaI	GTAC	2 cut(s)	372, 708
AfiI	CCNNNNNNNGG	2 cut(s)	1120, 1222
AflII	CTTAAG	1 cut(s)	1001
AgsI	TTSAA	8 cut(s)	78, 116, 139, 210, 351, 453, 483, 1241
AhlI	ACTAGT	1 cut(s)	1198
AjnI	CCWGG	2 cut(s)	105, 1102
AjuI	GAANNNNNNNTTGG	2 cut(s)	1099, 1131
AluBI	AGCT	6 cut(s)	127, 176, 326, 683, 740, 821
AluI	AGCT	6 cut(s)	127, 176, 326, 683, 740, 821
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	436
Ama87I	CYCGRG	1 cut(s)	954
AoxI	GGCC	3 cut(s)	84, 146, 1122
ApeKI	GCWGC	6 cut(s)	124, 155, 158, 581, 737, 818
ApoI	RAATTY	2 cut(s)	38, 590
Asp718I	GGTACC	1 cut(s)	706
AspA2I	CCTAGG	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	997, 1123
AsuC2I	CCSGG	1 cut(s)	995
AsuHPI	GGTGA	3 cut(s)	231, 506, 983
AvaI	CYCGRG	1 cut(s)	954
AvaII	GGWCC	1 cut(s)	997
AvrII	CCTAGG	1 cut(s)	362
AxyI	CCTNAGG	1 cut(s)	467
BanI	GGYRCC	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	3 cut(s)	228, 441, 471
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	6 cut(s)	136, 167, 170, 568, 749, 830
BccI	CCATC	1 cut(s)	1114
BciT130I	CCWGG	2 cut(s)	107, 1104
BclI	TGATCA	1 cut(s)	547
BcnI	CCSGG	1 cut(s)	995
BcoDI	GTCTC	1 cut(s)	288
BcuI	ACTAGT	1 cut(s)	1198
BfaI	CTAG	4 cut(s)	183, 363, 459, 1199
BfmI	CTRYAG	3 cut(s)	150, 582, 1171
BfrI	CTTAAG	1 cut(s)	1001
BglII	AGATCT	1 cut(s)	275
BisI	GCNGC	8 cut(s)	125, 156, 159, 440, 582, 738, 819, 1245
BlnI	CCTAGG	1 cut(s)	362
BlsI	GCNGC	8 cut(s)	126, 157, 160, 441, 583, 739, 820, 1246
Bme1390I	CCNGG	3 cut(s)	107, 995, 1104
Bme18I	GGWCC	1 cut(s)	997
BmeT110I	CYCGRG	1 cut(s)	954
BmgT120I	GGNCC	2 cut(s)	997, 1123
BmiI	GGNNCC	4 cut(s)	708, 874, 998, 1125
BmrFI	CCNGG	3 cut(s)	107, 995, 1104
BmrI	ACTGGG	1 cut(s)	195
BmsI	GCATC	1 cut(s)	568
BmuI	ACTGGG	1 cut(s)	195
BpiI	GAAGAC	3 cut(s)	228, 441, 471
BpuEI	CTTGAG	2 cut(s)	898, 920
BpuMI	CCSGG	1 cut(s)	995
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	362, 530, 942, 1102
Bsc4I	CCNNNNNNNGG	2 cut(s)	1120, 1222
Bse118I	RCCGGY	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	201
Bse21I	CCTNAGG	1 cut(s)	467
Bse3DI	GCAATG	2 cut(s)	936, 948
Bse8I	GATNNNNATC	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	107, 1104
BseDI	CCNNGG	4 cut(s)	362, 530, 942, 1102
BseGI	GGATG	4 cut(s)	253, 583, 969, 1125
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	2 cut(s)	1120, 1222
BseMI	GCAATG	2 cut(s)	936, 948
BseMII	CTCAG	3 cut(s)	341, 481, 999
BseNI	ACTGG	1 cut(s)	201
BseRI	GAGGAG	3 cut(s)	276, 1085, 1238
BseXI	GCAGC	6 cut(s)	136, 167, 170, 568, 749, 830
BshFI	GGCC	3 cut(s)	86, 148, 1124
BshNI	GGYRCC	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	646
BsiHKCI	CYCGRG	1 cut(s)	954
BsiSI	CCGG	3 cut(s)	293, 994, 1206
BslFI	GGGAC	1 cut(s)	1010
BslI	CCNNNNNNNGG	2 cut(s)	1120, 1222
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	1010
BsmI	GAATGC	2 cut(s)	442, 574
BsnI	GGCC	3 cut(s)	86, 148, 1124
BsoBI	CYCGRG	1 cut(s)	954
Bsp1286I	GDGCHC	2 cut(s)	200, 646
Bsp143I	GATC	4 cut(s)	275, 428, 547, 696
BspACI	CCGC	3 cut(s)	437, 440, 1244
BspANI	GGCC	3 cut(s)	86, 148, 1124
BspCNI	CTCAG	3 cut(s)	340, 480, 1000
BspLI	GGNNCC	4 cut(s)	708, 874, 998, 1125
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	706
BspTI	CTTAAG	1 cut(s)	1001
BsrDI	GCAATG	2 cut(s)	936, 948
BsrFI	RCCGGY	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	292
BssECI	CCNNGG	4 cut(s)	362, 530, 942, 1102
BssMI	GATC	4 cut(s)	275, 428, 547, 696
BssT1I	CCWWGG	3 cut(s)	362, 530, 942
Bst2UI	CCWGG	2 cut(s)	107, 1104
Bst4CI	ACNGT	4 cut(s)	227, 1082, 1115, 1175
Bst6I	CTCTTC	3 cut(s)	3, 335, 918
BstAFI	CTTAAG	1 cut(s)	1001
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstC8I	GCNNGC	5 cut(s)	129, 294, 298, 653, 823
BstDEI	CTNAG	5 cut(s)	327, 423, 467, 537, 1008
BstF5I	GGATG	4 cut(s)	253, 583, 969, 1125
BstKTI	GATC	4 cut(s)	278, 431, 550, 699
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	4 cut(s)	275, 428, 547, 696
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 578, 641, 1250
BstNI	CCWGG	2 cut(s)	107, 1104
BstNSI	RCATGY	1 cut(s)	1068
BstSCI	CCNGG	3 cut(s)	105, 993, 1102
BstSFI	CTRYAG	3 cut(s)	150, 582, 1171
BstV1I	GCAGC	6 cut(s)	136, 167, 170, 568, 749, 830
BstV2I	GAAGAC	3 cut(s)	228, 441, 471
BstX2I	RGATCY	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	943
BstYI	RGATCY	1 cut(s)	275
Bsu36I	CCTNAGG	1 cut(s)	467
BsuRI	GGCC	3 cut(s)	86, 148, 1124
BtsCI	GGATG	4 cut(s)	253, 583, 969, 1125
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	5 cut(s)	129, 294, 298, 653, 823
Cfr10I	RCCGGY	1 cut(s)	292
Cfr13I	GGNCC	2 cut(s)	997, 1123
Csp6I	GTAC	2 cut(s)	371, 707
CviAII	CATG	4 cut(s)	551, 638, 662, 1065
CviQI	GTAC	2 cut(s)	371, 707
DdeI	CTNAG	5 cut(s)	327, 423, 467, 537, 1008
DpnI	GATC	4 cut(s)	277, 430, 549, 698
DpnII	GATC	4 cut(s)	275, 428, 547, 696
DraI	TTTAAA	1 cut(s)	319
Eam1104I	CTCTTC	3 cut(s)	3, 335, 918
EarI	CTCTTC	3 cut(s)	3, 335, 918
Eco130I	CCWWGG	3 cut(s)	362, 530, 942
Eco147I	AGGCCT	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	997
Eco57I	CTGAAG	1 cut(s)	647
Eco81I	CCTNAGG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	954
EcoO109I	RGGNCCY	1 cut(s)	997
EcoRII	CCWGG	2 cut(s)	105, 1102
EcoT14I	CCWWGG	3 cut(s)	362, 530, 942
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	3 cut(s)	362, 530, 942
FaeI	CATG	4 cut(s)	554, 641, 665, 1068
FaqI	GGGAC	1 cut(s)	1010
FatI	CATG	4 cut(s)	550, 637, 661, 1064
FauI	CCCGC	1 cut(s)	444
FbaI	TGATCA	1 cut(s)	547
FblI	GTMKAC	2 cut(s)	250, 1170
Fnu4HI	GCNGC	8 cut(s)	125, 156, 159, 440, 582, 738, 819, 1245
FokI	GGATG	4 cut(s)	240, 590, 956, 1132
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	8 cut(s)	125, 156, 159, 440, 582, 738, 819, 1245
FspBI	CTAG	4 cut(s)	183, 363, 459, 1199
GluI	GCNGC	8 cut(s)	125, 156, 159, 440, 582, 738, 819, 1245
HaeIII	GGCC	3 cut(s)	86, 148, 1124
HapII	CCGG	3 cut(s)	293, 994, 1206
Hin1II	CATG	4 cut(s)	554, 641, 665, 1068
HincII	GTYRAC	2 cut(s)	251, 265
HindII	GTYRAC	2 cut(s)	251, 265
HpaII	CCGG	3 cut(s)	293, 994, 1206
HphI	GGTGA	3 cut(s)	231, 506, 983
Hpy166II	GTNNAC	3 cut(s)	251, 265, 1171
Hpy188I	TCNGA	4 cut(s)	219, 330, 379, 627
Hpy188III	TCNNGA	2 cut(s)	78, 406
Hpy8I	GTNNAC	3 cut(s)	251, 265, 1171
HpyAV	CCTTC	5 cut(s)	112, 189, 403, 514, 716
HpyCH4III	ACNGT	4 cut(s)	227, 1082, 1115, 1175
HpyCH4V	TGCA	8 cut(s)	572, 584, 689, 818, 825, 892, 906, 1253
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 578, 641, 1250
HpyF3I	CTNAG	5 cut(s)	327, 423, 467, 537, 1008
Hsp92II	CATG	4 cut(s)	554, 641, 665, 1068
KpnI	GGTACC	1 cut(s)	710
KroI	GCCGGC	1 cut(s)	292
KroNI	GCCGGC	1 cut(s)	294
Ksp22I	TGATCA	1 cut(s)	547
Kzo9I	GATC	4 cut(s)	275, 428, 547, 696
LmnI	GCTCC	2 cut(s)	181, 641
Lsp1109I	GCAGC	6 cut(s)	136, 167, 170, 568, 749, 830
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	4 cut(s)	183, 363, 459, 1199
MaeIII	GTNAC	2 cut(s)	494, 850
MalI	GATC	4 cut(s)	277, 430, 549, 698
MboI	GATC	4 cut(s)	275, 428, 547, 696
MboII	GAAGA	8 cut(s)	20, 228, 352, 441, 471, 725, 767, 905
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	200, 646
MluCI	AATT	8 cut(s)	38, 90, 205, 387, 590, 755, 930, 1044
MlyI	GAGTC	3 cut(s)	738, 993, 1176
MmeI	TCCRAC	1 cut(s)	1097
MroNI	GCCGGC	1 cut(s)	292
MseI	TTAA	7 cut(s)	98, 318, 693, 759, 771, 1002, 1137
MslI	CAYNNNNRTG	2 cut(s)	66, 555
MspCI	CTTAAG	1 cut(s)	1001
MspI	CCGG	3 cut(s)	293, 994, 1206
MspR9I	CCNGG	3 cut(s)	107, 995, 1104
Mva1269I	GAATGC	2 cut(s)	442, 574
MvaI	CCWGG	2 cut(s)	107, 1104
MwoI	GCNNNNNNNGC	4 cut(s)	167, 578, 641, 1250
NaeI	GCCGGC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	995
NdeII	GATC	4 cut(s)	275, 428, 547, 696
NgoMIV	GCCGGC	1 cut(s)	292
NlaIII	CATG	4 cut(s)	554, 641, 665, 1068
NlaIV	GGNNCC	4 cut(s)	708, 874, 998, 1125
NmuCI	GTSAC	2 cut(s)	494, 850
NspI	RCATGY	1 cut(s)	1068
PceI	AGGCCT	1 cut(s)	148
PctI	GAATGC	2 cut(s)	442, 574
PdiI	GCCGGC	1 cut(s)	294
PfeI	GAWTC	7 cut(s)	56, 74, 214, 413, 524, 1085, 1231
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	8 cut(s)	126, 157, 160, 441, 583, 739, 820, 1246
PleI	GAGTC	3 cut(s)	737, 992, 1176
PpsI	GAGTC	3 cut(s)	737, 992, 1176
PpuMI	RGGWCCY	1 cut(s)	997
Psp5II	RGGWCCY	1 cut(s)	997
Psp6I	CCWGG	2 cut(s)	105, 1102
PspGI	CCWGG	2 cut(s)	105, 1102
PspN4I	GGNNCC	4 cut(s)	708, 874, 998, 1125
PspPI	GGNCC	2 cut(s)	997, 1123
PspPPI	RGGWCCY	1 cut(s)	997
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	275
RsaI	GTAC	2 cut(s)	372, 708
RsaNI	GTAC	2 cut(s)	371, 707
RseI	CAYNNNNRTG	2 cut(s)	66, 555
SalI	GTCGAC	1 cut(s)	249
SaqAI	TTAA	7 cut(s)	98, 318, 693, 759, 771, 1002, 1137
SatI	GCNGC	8 cut(s)	125, 156, 159, 440, 582, 738, 819, 1245
Sau3AI	GATC	4 cut(s)	275, 428, 547, 696
Sau96I	GGNCC	2 cut(s)	997, 1123
SchI	GAGTC	3 cut(s)	738, 993, 1176
ScrFI	CCNGG	3 cut(s)	107, 995, 1104
SduI	GDGCHC	2 cut(s)	200, 646
SfaNI	GCATC	1 cut(s)	568
SfcI	CTRYAG	3 cut(s)	150, 582, 1171
SinI	GGWCC	1 cut(s)	997
SmiMI	CAYNNNNRTG	2 cut(s)	66, 555
SmlI	CTYRAG	3 cut(s)	877, 899, 1001
SmoI	CTYRAG	3 cut(s)	877, 899, 1001
SpeI	ACTAGT	1 cut(s)	1198
Sse9I	AATT	8 cut(s)	38, 90, 205, 387, 590, 755, 930, 1044
SseBI	AGGCCT	1 cut(s)	148
SsiI	CCGC	3 cut(s)	437, 440, 1244
SspI	AATATT	1 cut(s)	860
SspMI	CTAG	4 cut(s)	183, 363, 459, 1199
StuI	AGGCCT	1 cut(s)	148
StyD4I	CCNGG	3 cut(s)	105, 993, 1102
StyI	CCWWGG	3 cut(s)	362, 530, 942
TaaI	ACNGT	4 cut(s)	227, 1082, 1115, 1175
TaqI	TCGA	3 cut(s)	194, 250, 742
TasI	AATT	8 cut(s)	38, 90, 205, 387, 590, 755, 930, 1044
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	2 cut(s)	442, 1247
TfiI	GAWTC	7 cut(s)	56, 74, 214, 413, 524, 1085, 1231
Tru1I	TTAA	7 cut(s)	98, 318, 693, 759, 771, 1002, 1137
Tru9I	TTAA	7 cut(s)	98, 318, 693, 759, 771, 1002, 1137
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	2 cut(s)	494, 850
TseI	GCWGC	6 cut(s)	124, 155, 158, 581, 737, 818
Tsp45I	GTSAC	2 cut(s)	494, 850
TspDTI	ATGAA	5 cut(s)	500, 603, 735, 1077, 1244
TspRI	CASTG	1 cut(s)	579
Vha464I	CTTAAG	1 cut(s)	1001
VpaK11BI	GGWCC	1 cut(s)	997
XapI	RAATTY	2 cut(s)	38, 590
XceI	RCATGY	1 cut(s)	1068
XmaJI	CCTAGG	1 cut(s)	362
XmiI	GTMKAC	2 cut(s)	250, 1170
XspI	CTAG	4 cut(s)	183, 363, 459, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.