Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0018137

Physical Location & Seq

Genomic Coordinates Forward (+)

30558286 .. 30559168

Gene Structure 883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0271100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCATAATCCAGAAATTCATTATCTTCTAGATGAGTATGATGAAGGATTGAAAAAACGTTCAAAAGTATTGGAGATTAAAGGATTTGCTGCCATAGGATCTGGTGCTACACATGCTTTTAATGAATTGGATAAGAAATTGAACGATCCGGAATGTAGACTCAGCTTAGAAGAAGCAATTGAATTGGTTAAGTATGGGCTTCTTCGAGCAGCATTGCTTGATATCTCCACTGGAGGACCGTTATGGGTAGTACATGTTAACTCGGAAGGAATTAATATAAAGTCTGAGAACAATGTTGTTGGACTTTATGTGAGGTACTACATACACCGTGTCACCTTTGAGAATGAGGCAGCTGCAAGACTTCTACTTGATGAGGCAAAAAGAGTTTCTAAATCAAATATGCCTCCATTCACTGATTGGCCACAGTTGAAGGTGATGAACATAGGCAAAAAAATATTTTTTGCTAAGCAATCAAGAGAATTGTTGTTGACCTTGAGACTTGCAACGAGTGATGAGGAGGCTCCAGAATTTCTCCCCAACCCAGAGGCGTCTGGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

186

Amino Acids

20.99

Weight (kDa)

5.89

Isoelectric Point (pI)

54.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018137)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g16850
rosa_multiflora	Rmu_sc0000295.1_g000009
rosa_rugosa	Rorug05G0271100 Rorug05G0271200 Rorug05G0271300 Rorug05G0271400 Rorug05G0271500 Rorug07G0215200
rosa_samantha	Rh3CG293800 Rh7BG348700 Rh7BG399300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	157
AccIII	TCCGGA	1 cut(s)	148
AclI	AACGTT	1 cut(s)	58
AclWI	GGATC	2 cut(s)	106, 140
AcoI	YGGCCR	2 cut(s)	419, 553
AcsI	RAATTY	2 cut(s)	15, 527
AcyI	GRCGYC	1 cut(s)	548
AfaI	GTAC	2 cut(s)	252, 317
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	5 cut(s)	52, 63, 142, 182, 430
AluBI	AGCT	2 cut(s)	165, 353
AluI	AGCT	2 cut(s)	165, 353
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	2 cut(s)	106, 140
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	2 cut(s)	419, 553
ApeKI	GCWGC	4 cut(s)	89, 209, 350, 353
ApoI	RAATTY	2 cut(s)	15, 527
AseI	ATTAAT	1 cut(s)	273
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	325, 445
AvaII	GGWCC	1 cut(s)	236
BalI	TGGCCA	2 cut(s)	421, 555
BbvI	GCAGC	4 cut(s)	76, 221, 340, 362
BcoDI	GTCTC	1 cut(s)	490
BfaI	CTAG	2 cut(s)	29, 559
BisI	GCNGC	4 cut(s)	90, 210, 351, 354
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	4 cut(s)	91, 211, 352, 355
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	1 cut(s)	522
BpmI	CTGGAG	2 cut(s)	252, 507
Bpu1102I	GCTNAGC	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	514
BsaHI	GRCGYC	1 cut(s)	548
BsaWI	WCCGGW	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	235
Bse3DI	GCAATG	1 cut(s)	212
BseAI	TCCGGA	1 cut(s)	148
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	175, 276
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	530
BseXI	GCAGC	4 cut(s)	76, 221, 340, 362
BshFI	GGCC	2 cut(s)	421, 555
BsiSI	CCGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	421, 555
Bsp13I	TCCGGA	1 cut(s)	148
Bsp143I	GATC	2 cut(s)	98, 145
Bsp1720I	GCTNAGC	1 cut(s)	465
BspANI	GGCC	2 cut(s)	421, 555
BspCNI	CTCAG	2 cut(s)	174, 277
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	522
BspPI	GGATC	2 cut(s)	106, 140
BsrDI	GCAATG	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	235
BssMI	GATC	2 cut(s)	98, 145
BssNI	GRCGYC	1 cut(s)	548
Bst4CI	ACNGT	3 cut(s)	240, 329, 426
BstACI	GRCGYC	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	161, 166, 285, 465
BstKTI	GATC	2 cut(s)	101, 148
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	2 cut(s)	98, 145
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	2 cut(s)	116, 257
BstV1I	GCAGC	4 cut(s)	76, 221, 340, 362
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	2 cut(s)	421, 555
BtsIMutI	CAGTG	2 cut(s)	228, 411
Cfr13I	GGNCC	1 cut(s)	236
CseI	GACGC	1 cut(s)	537
Csp6I	GTAC	2 cut(s)	251, 316
CviAII	CATG	2 cut(s)	113, 254
CviJI	RGCY	6 cut(s)	165, 199, 353, 421, 521, 555
CviKI_1	RGCY	6 cut(s)	165, 199, 353, 421, 521, 555
CviQI	GTAC	2 cut(s)	251, 316
DdeI	CTNAG	4 cut(s)	161, 166, 285, 465
DpnI	GATC	2 cut(s)	100, 147
DpnII	GATC	2 cut(s)	98, 145
EaeI	YGGCCR	2 cut(s)	419, 553
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	236
EcoRV	GATATC	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	116, 257
FatI	CATG	2 cut(s)	112, 253
FblI	GTMKAC	1 cut(s)	157
Fnu4HI	GCNGC	4 cut(s)	90, 210, 351, 354
Fsp4HI	GCNGC	4 cut(s)	90, 210, 351, 354
FspBI	CTAG	2 cut(s)	29, 559
GluI	GCNGC	4 cut(s)	90, 210, 351, 354
GsuI	CTGGAG	2 cut(s)	252, 507
HaeIII	GGCC	2 cut(s)	421, 555
HapII	CCGG	1 cut(s)	149
HgaI	GACGC	1 cut(s)	537
Hin1I	GRCGYC	1 cut(s)	548
Hin1II	CATG	2 cut(s)	116, 257
HincII	GTYRAC	2 cut(s)	259, 489
HindII	GTYRAC	2 cut(s)	259, 489
HinfI	GANTC	1 cut(s)	159
HpaI	GTTAAC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	149
HphI	GGTGA	2 cut(s)	325, 445
Hpy166II	GTNNAC	3 cut(s)	158, 259, 489
Hpy188I	TCNGA	2 cut(s)	265, 286
Hpy188III	TCNNGA	5 cut(s)	11, 29, 149, 474, 524
Hpy8I	GTNNAC	3 cut(s)	158, 259, 489
HpyAV	CCTTC	3 cut(s)	38, 260, 424
HpyCH4III	ACNGT	3 cut(s)	240, 329, 426
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	4, 356, 503
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	4 cut(s)	161, 166, 285, 465
HpySE526I	ACGT	1 cut(s)	58
Hsp92I	GRCGYC	1 cut(s)	548
Hsp92II	CATG	2 cut(s)	116, 257
Kpn2I	TCCGGA	1 cut(s)	148
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	98, 145
LmnI	GCTCC	1 cut(s)	526
LpnPI	CCDG	7 cut(s)	24, 87, 162, 216, 537, 537, 555
Lsp1109I	GCAGC	4 cut(s)	76, 221, 340, 362
MaeI	CTAG	2 cut(s)	29, 559
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	2 cut(s)	100, 147
MboI	GATC	2 cut(s)	98, 145
MboII	GAAGA	3 cut(s)	17, 182, 194
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	98
MlsI	TGGCCA	2 cut(s)	421, 555
MluCI	AATT	8 cut(s)	15, 125, 137, 177, 182, 270, 479, 527
MluNI	TGGCCA	2 cut(s)	421, 555
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	280
MnlI	CCTC	8 cut(s)	227, 306, 340, 367, 414, 508, 511, 538
Mox20I	TGGCCA	2 cut(s)	421, 555
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	148
MscI	TGGCCA	2 cut(s)	421, 555
MseI	TTAA	5 cut(s)	78, 120, 189, 258, 273
Msp20I	TGGCCA	2 cut(s)	421, 555
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	149
MunI	CAATTG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	2 cut(s)	98, 145
NlaIII	CATG	2 cut(s)	116, 257
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	116, 257
PciI	ACATGT	1 cut(s)	253
PkrI	GCNGC	4 cut(s)	91, 211, 352, 355
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PscI	ACATGT	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	273
Psp1406I	AACGTT	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	252, 317
RsaNI	GTAC	2 cut(s)	251, 316
SaqAI	TTAA	5 cut(s)	78, 120, 189, 258, 273
SatI	GCNGC	4 cut(s)	90, 210, 351, 354
Sau3AI	GATC	2 cut(s)	98, 145
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	1 cut(s)	153
SetI	ASST	7 cut(s)	61, 167, 317, 338, 355, 435, 494
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	493
SmoI	CTYRAG	1 cut(s)	493
Sse9I	AATT	8 cut(s)	15, 125, 137, 177, 182, 270, 479, 527
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	2 cut(s)	29, 559
TaaI	ACNGT	3 cut(s)	240, 329, 426
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	205
TasI	AATT	8 cut(s)	15, 125, 137, 177, 182, 270, 479, 527
TatI	WGTACW	1 cut(s)	250
Tru1I	TTAA	5 cut(s)	78, 120, 189, 258, 273
Tru9I	TTAA	5 cut(s)	78, 120, 189, 258, 273
TscAI	CASTG	2 cut(s)	235, 418
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	4 cut(s)	89, 209, 350, 353
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	4 cut(s)	8, 57, 138, 452
TspRI	CASTG	2 cut(s)	235, 418
VpaK11BI	GGWCC	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	273
XapI	RAATTY	2 cut(s)	15, 527
XbaI	TCTAGA	1 cut(s)	28
XceI	RCATGY	2 cut(s)	116, 257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	157
XspI	CTAG	2 cut(s)	29, 559
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.