Rh3CG293800

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018137
Physical Location & Seq
Forward (+)
30019378 .. 30019840
463 bp
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UTR
Exon/CDS
Intron
Rh3CG293800.1

Sequence Viewer

Length: 315 bp
ATGTTTAATAGCACAGTTACCGAAGATGATGGTTTCTTATGTCCTGCCGATGGGGCCATAATGATAACAGCAGCAAGTCATTTACCTTACAATAGGAATGGATTCAAATTCTTCACAAATGCTGGAGGGCTTGGGAAAGCTGACATTAAAAACATCTTGGAGCATGCTGCAGATATTTACAACAAGTGGTGGGATAGAAACCAAAAGAAGCTGACATTAAAAACATCTTGGAGCATGCTGCAGATATTTACAACAAGTGGTGGGATAGAGATGGAGTGGTGGGATAGAGACCAAAAGACCAAGTATGTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

104

Amino Acids

11.93

Weight (kDa)

6.71

Isoelectric Point (pI)

22.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGM_PMM_I PF02878 16 - 58 5.7e-06 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 2 cut(s) 140, 211
AluI AGCT 2 cut(s) 140, 211
Alw26I GTCTC 1 cut(s) 282
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 3 cut(s) 71, 167, 238
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 54
BbvI GCAGC 3 cut(s) 83, 154, 225
BccI CCATC 3 cut(s) 23, 44, 265
BcoDI GTCTC 1 cut(s) 282
BfmI CTRYAG 2 cut(s) 168, 239
BglI GCCNNNNNGGC 1 cut(s) 53
BisI GCNGC 3 cut(s) 72, 168, 239
BlsI GCNGC 3 cut(s) 73, 169, 240
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 83, 154, 225
BshFI GGCC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 282
BsnI GGCC 1 cut(s) 56
Bso31I GGTCTC 1 cut(s) 282
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 55
BspMAI CTGCAG 2 cut(s) 172, 243
BspTNI GGTCTC 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 165, 236
BstMAI GTCTC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 167, 238
BstSFI CTRYAG 2 cut(s) 168, 239
BstV1I GCAGC 3 cut(s) 83, 154, 225
BsuRI GGCC 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 165, 236
Cfr13I GGNCC 1 cut(s) 54
CviAII CATG 2 cut(s) 164, 235
CviJI RGCY 4 cut(s) 56, 130, 140, 211
CviKI_1 RGCY 4 cut(s) 56, 130, 140, 211
Eco31I GGTCTC 1 cut(s) 282
FaeI CATG 2 cut(s) 167, 238
FaiI YATR 5 cut(s) 40, 59, 165, 236, 306
FatI CATG 2 cut(s) 163, 234
Fnu4HI GCNGC 3 cut(s) 72, 168, 239
Fsp4HI GCNGC 3 cut(s) 72, 168, 239
GluI GCNGC 3 cut(s) 72, 168, 239
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 2 cut(s) 167, 238
HinfI GANTC 1 cut(s) 102
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 2 cut(s) 170, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 167, 238
LmnI GCTCC 2 cut(s) 160, 231
LpnPI CCDG 2 cut(s) 57, 108
Lsp1109I GCAGC 3 cut(s) 83, 154, 225
MaeIII GTNAC 1 cut(s) 16
MboII GAAGA 2 cut(s) 35, 103
MluCI AATT 1 cut(s) 107
MnlI CCTC 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 3 cut(s) 6, 147, 218
MwoI GCNNNNNNNGC 1 cut(s) 53
NlaIII CATG 2 cut(s) 167, 238
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 2 cut(s) 167, 238
PaeI GCATGC 2 cut(s) 167, 238
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 1 cut(s) 102
PkrI GCNGC 3 cut(s) 73, 169, 240
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 54
PstI CTGCAG 2 cut(s) 172, 243
SaqAI TTAA 3 cut(s) 6, 147, 218
SatI GCNGC 3 cut(s) 72, 168, 239
Sau96I GGNCC 1 cut(s) 54
SetI ASST 3 cut(s) 88, 142, 213
SfcI CTRYAG 2 cut(s) 168, 239
SphI GCATGC 2 cut(s) 167, 238
Sse9I AATT 1 cut(s) 107
TaaI ACNGT 1 cut(s) 16
TasI AATT 1 cut(s) 107
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 3 cut(s) 6, 147, 218
Tru9I TTAA 3 cut(s) 6, 147, 218
TseI GCWGC 3 cut(s) 71, 167, 238
XapI RAATTY 1 cut(s) 107
XceI RCATGY 2 cut(s) 167, 238
XmnI GAANNNNTTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.