Rorug05G0271200

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
30565588 .. 30572638
7051 bp
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UTR
Exon/CDS
Intron
Rorug05G0271200.1

Sequence Viewer

Length: 348 bp
ATGCAAGAAATCTATAATCATCAGAATTTTGTTTCCAGTACAGTTCAAAGTGAAGGTTCTGTTTTTAAGAGAGGTCAACATTCTGAGGTTAAATCAAGGATATCAAGACGTGCATTTGAGTTAGCAATGACAGAACAGAATCAATGTCTAGACAGTCAGTATAGTTCTGTATGTCAAAATGTGAATATATCTGAACATCGGAACAAACGATTTAGAGAAACATTGGAGCATTCAGAAAGTAGTAGTTCTTCTCAATTTGTGCAGACCGATGAAATTATACATACATCTAAAGCCGAAACACTATTCCTCGACACTGTTCATTCAACTGTTCATTTAACATTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.26

Weight (kDa)

6.36

Isoelectric Point (pI)

57.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 1 cut(s) 40
AgsI TTSAA 3 cut(s) 47, 324, 343
AjiI CACGTC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 232, 264
BfaI CTAG 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 132
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 281
BsmI GAATGC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 1 cut(s) 36
Bst4CI ACNGT 4 cut(s) 43, 155, 316, 328
BstDEI CTNAG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 110
BtsIMutI CAGTG 1 cut(s) 312
Csp6I GTAC 1 cut(s) 39
CviJI RGCY 1 cut(s) 293
CviKI_1 RGCY 1 cut(s) 293
CviQI GTAC 1 cut(s) 39
DdeI CTNAG 1 cut(s) 84
Eco32I GATATC 1 cut(s) 102
EcoRV GATATC 1 cut(s) 102
FaiI YATR 6 cut(s) 15, 162, 172, 188, 278, 282
FspBI CTAG 1 cut(s) 149
HincII GTYRAC 1 cut(s) 77
HindII GTYRAC 1 cut(s) 77
HinfI GANTC 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 77
Hpy188I TCNGA 5 cut(s) 24, 85, 193, 201, 235
Hpy188III TCNNGA 2 cut(s) 105, 149
Hpy8I GTNNAC 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 4 cut(s) 43, 155, 316, 328
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 3 cut(s) 4, 113, 262
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 109
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 1 cut(s) 49
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 109
MboII GAAGA 1 cut(s) 240
MluCI AATT 3 cut(s) 25, 254, 273
MnlI CCTC 3 cut(s) 65, 79, 317
MseI TTAA 3 cut(s) 66, 90, 335
MslI CAYNNNNRTG 1 cut(s) 343
Mva1269I GAATGC 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PctI GAATGC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 139
RsaI GTAC 1 cut(s) 40
RsaNI GTAC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 343
SaqAI TTAA 3 cut(s) 66, 90, 335
SetI ASST 4 cut(s) 58, 76, 90, 112
SgeI CNNG 7 cut(s) 17, 48, 108, 117, 122, 161, 320
SmiMI CAYNNNNRTG 1 cut(s) 343
Sse9I AATT 3 cut(s) 25, 254, 273
SspMI CTAG 1 cut(s) 149
TaaI ACNGT 4 cut(s) 43, 155, 316, 328
TaiI ACGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 309
TaqII GACCGA 1 cut(s) 281
TasI AATT 3 cut(s) 25, 254, 273
TatI WGTACW 1 cut(s) 38
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 3 cut(s) 66, 90, 335
Tru9I TTAA 3 cut(s) 66, 90, 335
TscAI CASTG 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 285, 308, 320
TspRI CASTG 1 cut(s) 319
XapI RAATTY 1 cut(s) 25
XbaI TCTAGA 1 cut(s) 148
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.