Rh7BG399300

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018137
Physical Location & Seq
Reverse (-)
44288690 .. 44291485
2796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG399300.1

Sequence Viewer

Length: 498 bp
ATGTCTGGGGAGCAACCTGCCACTCCACCTCCACCACCCCTAGTATCGCCGCAATCCTCATCGCCGATTTGTTTCCGATTGCCGCGCAGAGCCGCCCCAAAATCCAAAATCGGTTCTGTCGATGACATCGCGGTTAATCTCAATAGGGTTCTTGCCCTATCTTGGCTAGACTCGGAGTTTGTGCTTGAGGTTCTGAGGAGAGAACGCCAAGAATTTGCGGAGGAGTTGCAGCGCCGCAAAATTCGCACTTTAATGTCTGTGCGATTGGCATCCACACCAGCAATGTTTAATAGCACAGTTACCGAAGATGATGGTTTCTTATGTCCTGCCGATGGGGCCATAATGATAACAGCAGCAAGTCATTTACCTTACAACAGGAATGGATTCAAATTCTTCACAAATGCTGGAGGGCTTGGGAAAGCTGACATTAAAAACATCTTGGAGCATGCTGCAGATATTTACAACAAGTGGTGGGATAGAGATGGAGTGGTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

165

Amino Acids

18.27

Weight (kDa)

7.8

Isoelectric Point (pI)

61.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGM_PMM_I PF02878 82 - 152 8.6e-08 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 25
AccII CGCG 2 cut(s) 85, 131
AciI CCGC 6 cut(s) 50, 83, 93, 131, 218, 235
AcsI RAATTY 3 cut(s) 212, 240, 389
AfiI CCNNNNNNNGG 2 cut(s) 162, 332
AgsI TTSAA 1 cut(s) 388
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
AoxI GGCC 1 cut(s) 336
ApeKI GCWGC 3 cut(s) 229, 353, 449
ApoI RAATTY 3 cut(s) 212, 240, 389
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
Asp700I GAANNNNTTC 1 cut(s) 383
AspLEI GCGC 2 cut(s) 87, 234
AspS9I GGNCC 1 cut(s) 336
BbvI GCAGC 3 cut(s) 241, 365, 436
BccI CCATC 3 cut(s) 305, 326, 476
BfaI CTAG 2 cut(s) 41, 167
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 235
BfuAI ACCTGC 1 cut(s) 25
BglI GCCNNNNNGGC 1 cut(s) 335
BisI GCNGC 7 cut(s) 50, 83, 93, 230, 235, 354, 450
BlsI GCNGC 7 cut(s) 51, 84, 94, 231, 236, 355, 451
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 337
BmsI GCATC 1 cut(s) 278
BpmI CTGGAG 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 332
Bse3DI GCAATG 1 cut(s) 288
Bse8I GATNNNNATC 1 cut(s) 268
BseGI GGATG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 268
BseLI CCNNNNNNNGG 2 cut(s) 162, 332
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 185
BseRI GAGGAG 2 cut(s) 211, 236
BseXI GCAGC 3 cut(s) 241, 365, 436
Bsh1236I CGCG 2 cut(s) 85, 131
BshFI GGCC 1 cut(s) 338
BslI CCNNNNNNNGG 2 cut(s) 162, 332
BsnI GGCC 1 cut(s) 338
BspACI CCGC 6 cut(s) 50, 83, 93, 131, 218, 235
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 186
BspFNI CGCG 2 cut(s) 85, 131
BspLI GGNNCC 1 cut(s) 337
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 447
BstDEI CTNAG 1 cut(s) 194
BstF5I GGATG 1 cut(s) 269
BstFNI CGCG 2 cut(s) 85, 131
BstH2I RGCGCY 1 cut(s) 235
BstHHI GCGC 2 cut(s) 87, 234
BstMWI GCNNNNNNNGC 2 cut(s) 243, 335
BstNSI RCATGY 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 450
BstUI CGCG 2 cut(s) 85, 131
BstV1I GCAGC 3 cut(s) 241, 365, 436
BsuRI GGCC 1 cut(s) 338
BtgZI GCGATG 2 cut(s) 45, 112
BtsCI GGATG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 447
CfoI GCGC 2 cut(s) 87, 234
Cfr13I GGNCC 1 cut(s) 336
CviAII CATG 1 cut(s) 446
CviJI RGCY 5 cut(s) 92, 166, 338, 412, 422
CviKI_1 RGCY 5 cut(s) 92, 166, 338, 412, 422
DdeI CTNAG 1 cut(s) 194
FaeI CATG 1 cut(s) 449
FaiI YATR 3 cut(s) 322, 341, 447
FatI CATG 1 cut(s) 445
Fnu4HI GCNGC 7 cut(s) 50, 83, 93, 230, 235, 354, 450
FokI GGATG 1 cut(s) 256
Fsp4HI GCNGC 7 cut(s) 50, 83, 93, 230, 235, 354, 450
FspBI CTAG 2 cut(s) 41, 167
GlaI GCGC 2 cut(s) 86, 233
GluI GCNGC 7 cut(s) 50, 83, 93, 230, 235, 354, 450
GsuI CTGGAG 1 cut(s) 426
HaeII RGCGCY 1 cut(s) 235
HaeIII GGCC 1 cut(s) 338
HhaI GCGC 2 cut(s) 87, 234
Hin1II CATG 1 cut(s) 449
Hin6I GCGC 2 cut(s) 85, 232
HinP1I GCGC 2 cut(s) 85, 232
HinfI GANTC 2 cut(s) 170, 384
Hpy188I TCNGA 3 cut(s) 77, 175, 195
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 2 cut(s) 229, 452
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 335
HpyF3I CTNAG 1 cut(s) 194
Hsp92II CATG 1 cut(s) 449
HspAI GCGC 2 cut(s) 85, 232
LmnI GCTCC 2 cut(s) 10, 442
LpnPI CCDG 5 cut(s) 30, 291, 339, 361, 390
Lsp1109I GCAGC 3 cut(s) 241, 365, 436
LweI GCATC 1 cut(s) 278
MaeI CTAG 2 cut(s) 41, 167
MaeIII GTNAC 1 cut(s) 298
MboII GAAGA 2 cut(s) 317, 385
MluCI AATT 3 cut(s) 212, 240, 389
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 6 cut(s) 39, 67, 181, 189, 214, 401
MroXI GAANNNNTTC 1 cut(s) 383
MseI TTAA 4 cut(s) 135, 251, 288, 429
MslI CAYNNNNRTG 1 cut(s) 251
MvnI CGCG 2 cut(s) 85, 131
MwoI GCNNNNNNNGC 2 cut(s) 243, 335
NlaIII CATG 1 cut(s) 449
NlaIV GGNNCC 1 cut(s) 337
NspI RCATGY 1 cut(s) 449
PaeI GCATGC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 384
PkrI GCNGC 7 cut(s) 51, 84, 94, 231, 236, 355, 451
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 454
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 4 cut(s) 135, 251, 288, 429
SatI GCNGC 7 cut(s) 50, 83, 93, 230, 235, 354, 450
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 1 cut(s) 164
SetI ASST 5 cut(s) 19, 31, 192, 370, 424
SfaNI GCATC 1 cut(s) 278
SfcI CTRYAG 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 449
Sse9I AATT 3 cut(s) 212, 240, 389
SsiI CCGC 6 cut(s) 50, 83, 93, 131, 218, 235
SspMI CTAG 2 cut(s) 41, 167
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 120
TasI AATT 3 cut(s) 212, 240, 389
TauI GCSGC 4 cut(s) 52, 85, 95, 237
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 4 cut(s) 135, 251, 288, 429
Tru9I TTAA 4 cut(s) 135, 251, 288, 429
TseI GCWGC 3 cut(s) 229, 353, 449
XapI RAATTY 3 cut(s) 212, 240, 389
XceI RCATGY 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 2 cut(s) 41, 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.