Rorug05G0271300

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018137
Physical Location & Seq
Reverse (-)
30582138 .. 30583660
1523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0271300.1

Sequence Viewer

Length: 846 bp
ATGATTGAAGACAGAGAAATGGTCATGGTTTCACTAACTGGTAGAGACCCATTTCGCAAAAATGCCTATTTTCTCAAACCCATTCTCCCTAATTCCTCCATTTATGAACCTGCTTTCAAGCTCCCTCACTGTTTCTCCTCCCTCCCACCCTGTTTTGACCCAGAAAAGTTGGAGCTTCAATTCCGTGGATGGCGTTTCGACCACCAAGATTTGCAGAGTTGGTTTCTCCACTTGGCTTCTAAGCACCAATTGACAGGGGAAGAAAGCTGGTTTGGGCATGGGAACGATTTCTGGAACTTAGGCCAAAGCCCAAAGTTATATGCTATGGTGAGTGATTGTCTGAATGTTGGAAATATGAAGAGGGTTTTAGACTCAGCAGGTGAAGGTTTTAATTCCATGGCCATTAAGAACTGGAATTTTCCTAGAAACTATGTTGAAAAGGAAGAGTGGAAATACCTTCCACATCGAGTTGCTAGGCAATTTGGATTTGATCAAGACCTTCCGTGTTCTGTTTCTGGACACAGCCACAATTATGACAATGCGAAATTGTATATTCCATCCAGGATTTCTGATGCAGATGTTAGCATTAGATACTTGAATTGGTGGAAGGAATCAGTGTCAGGCCTCGAACAGAGACATATGCCACCAAAAAAGAAAGTTAAGAAAGCTGTAGACTTGACATATGATGCCACCATTCCTTTTATTTGTTCTCCAAAGAATTCAGAAGAATTTGTGCATGTTTCAACAGGAAGGAATGAGGGTGAATATTCCCTTGGTCCTCCAGGATTTCCTCTCTCAAAAGGAATAGAATGGAAGCTGGAGATCCTATGGACGAAGATGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

281

Amino Acids

32.64

Weight (kDa)

7.14

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 151 - 203 3.8e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 368
Acc36I ACCTGC 2 cut(s) 118, 368
AccI GTMKAC 1 cut(s) 672
AclWI GGATC 1 cut(s) 817
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 3 cut(s) 415, 718, 728
AgsI TTSAA 6 cut(s) 8, 118, 179, 437, 598, 744
AjnI CCWGG 2 cut(s) 560, 781
AjuI GAANNNNNNNTTGG 4 cut(s) 255, 287, 756, 788
AluBI AGCT 5 cut(s) 121, 175, 267, 668, 817
AluI AGCT 5 cut(s) 121, 175, 267, 668, 817
Alw26I GTCTC 2 cut(s) 39, 628
AlwI GGATC 1 cut(s) 817
AoxI GGCC 3 cut(s) 301, 399, 622
ApoI RAATTY 3 cut(s) 415, 718, 728
Asp700I GAANNNNTTC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 776
AsuHPI GGTGA 3 cut(s) 340, 392, 773
AvaII GGWCC 1 cut(s) 776
BalI TGGCCA 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 15
BccI CCATC 2 cut(s) 183, 565
BciT130I CCWGG 2 cut(s) 562, 783
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 39, 628
BfaI CTAG 2 cut(s) 423, 474
BfmI CTRYAG 1 cut(s) 669
BfuAI ACCTGC 2 cut(s) 118, 368
Bme1390I CCNGG 2 cut(s) 562, 783
Bme18I GGWCC 1 cut(s) 776
BmgT120I GGNCC 1 cut(s) 776
BmrFI CCNGG 2 cut(s) 562, 783
BmsI GCATC 2 cut(s) 562, 676
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 2 cut(s) 765, 839
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 3 cut(s) 184, 396, 772
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 119, 149
Bse1I ACTGG 2 cut(s) 43, 416
BseBI CCWGG 2 cut(s) 562, 783
BseDI CCNNGG 3 cut(s) 184, 396, 772
BseGI GGATG 2 cut(s) 194, 557
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 43, 416
BseRI GAGGAG 1 cut(s) 127
BshFI GGCC 3 cut(s) 303, 401, 624
BsmAI GTCTC 2 cut(s) 39, 628
BsnI GGCC 3 cut(s) 303, 401, 624
Bso31I GGTCTC 1 cut(s) 39
Bsp143I GATC 2 cut(s) 490, 822
Bsp19I CCATGG 1 cut(s) 396
BspANI GGCC 3 cut(s) 303, 401, 624
BspCNI CTCAG 1 cut(s) 386
BspMI ACCTGC 2 cut(s) 118, 368
BspPI GGATC 1 cut(s) 817
BspTNI GGTCTC 1 cut(s) 39
BsrI ACTGG 2 cut(s) 43, 416
BssECI CCNNGG 3 cut(s) 184, 396, 772
BssMI GATC 2 cut(s) 490, 822
BssT1I CCWWGG 2 cut(s) 396, 772
Bst2UI CCWGG 2 cut(s) 562, 783
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 2 cut(s) 353, 438
BstDEI CTNAG 3 cut(s) 240, 298, 373
BstDSI CCRYGG 2 cut(s) 184, 396
BstF5I GGATG 2 cut(s) 194, 557
BstKTI GATC 2 cut(s) 493, 825
BstMAI GTCTC 2 cut(s) 39, 628
BstMBI GATC 2 cut(s) 490, 822
BstNI CCWGG 2 cut(s) 562, 783
BstNSI RCATGY 1 cut(s) 740
BstSCI CCNGG 2 cut(s) 560, 781
BstSFI CTRYAG 1 cut(s) 669
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 822
BstYI RGATCY 1 cut(s) 822
BsuRI GGCC 3 cut(s) 303, 401, 624
BtgI CCRYGG 2 cut(s) 184, 396
BtsCI GGATG 2 cut(s) 194, 557
BtsIMutI CAGTG 2 cut(s) 127, 621
BveI ACCTGC 2 cut(s) 118, 368
Cfr13I GGNCC 1 cut(s) 776
CviAII CATG 4 cut(s) 25, 278, 397, 737
DdeI CTNAG 3 cut(s) 240, 298, 373
DpnI GATC 2 cut(s) 492, 824
DpnII GATC 2 cut(s) 490, 822
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 2 cut(s) 353, 438
EarI CTCTTC 2 cut(s) 353, 438
Eco130I CCWWGG 2 cut(s) 396, 772
Eco147I AGGCCT 1 cut(s) 624
Eco31I GGTCTC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 776
EcoRI GAATTC 1 cut(s) 718
EcoRII CCWGG 2 cut(s) 560, 781
EcoT14I CCWWGG 2 cut(s) 396, 772
ErhI CCWWGG 2 cut(s) 396, 772
FaeI CATG 4 cut(s) 28, 281, 400, 740
FatI CATG 4 cut(s) 24, 277, 396, 736
FauNDI CATATG 2 cut(s) 639, 682
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 1 cut(s) 672
FokI GGATG 2 cut(s) 201, 544
FspBI CTAG 2 cut(s) 423, 474
GsuI CTGGAG 2 cut(s) 765, 839
HaeIII GGCC 3 cut(s) 303, 401, 624
Hin1II CATG 4 cut(s) 28, 281, 400, 740
HinfI GANTC 2 cut(s) 371, 611
HphI GGTGA 3 cut(s) 340, 392, 773
Hpy166II GTNNAC 1 cut(s) 673
Hpy188I TCNGA 3 cut(s) 342, 571, 724
Hpy188III TCNNGA 3 cut(s) 292, 494, 516
Hpy8I GTNNAC 1 cut(s) 673
HpyAV CCTTC 5 cut(s) 377, 467, 509, 601, 744
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 214, 575, 736
HpyF3I CTNAG 3 cut(s) 240, 298, 373
Hsp92II CATG 4 cut(s) 28, 281, 400, 740
Ksp22I TGATCA 1 cut(s) 490
Kzo9I GATC 2 cut(s) 490, 822
LmnI GCTCC 2 cut(s) 126, 172
LweI GCATC 2 cut(s) 562, 676
MaeI CTAG 2 cut(s) 423, 474
MalI GATC 2 cut(s) 492, 824
MboI GATC 2 cut(s) 490, 822
MboII GAAGA 5 cut(s) 20, 272, 370, 455, 737
MfeI CAATTG 1 cut(s) 248
MflI RGATCY 1 cut(s) 822
MlsI TGGCCA 1 cut(s) 401
MluNI TGGCCA 1 cut(s) 401
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 150, 328
MnlI CCTC 9 cut(s) 106, 135, 148, 152, 354, 635, 751, 789, 801
Mox20I TGGCCA 1 cut(s) 401
MroXI GAANNNNTTC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 401
MseI TTAA 3 cut(s) 390, 405, 660
MslI CAYNNNNRTG 1 cut(s) 531
Msp20I TGGCCA 1 cut(s) 401
MspR9I CCNGG 2 cut(s) 562, 783
MunI CAATTG 1 cut(s) 248
MvaI CCWGG 2 cut(s) 562, 783
NcoI CCATGG 1 cut(s) 396
NdeI CATATG 2 cut(s) 639, 682
NdeII GATC 2 cut(s) 490, 822
NlaIII CATG 4 cut(s) 28, 281, 400, 740
NspI RCATGY 1 cut(s) 740
PaqCI CACCTGC 1 cut(s) 368
PceI AGGCCT 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 611
PfoI TCCNGGA 2 cut(s) 560, 781
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 560, 781
PspGI CCWGG 2 cut(s) 560, 781
PspPI GGNCC 1 cut(s) 776
PsuI RGATCY 1 cut(s) 822
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 3 cut(s) 390, 405, 660
Sau3AI GATC 2 cut(s) 490, 822
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 562, 783
SfaNI GCATC 2 cut(s) 562, 676
SfcI CTRYAG 1 cut(s) 669
SinI GGWCC 1 cut(s) 776
SmiMI CAYNNNNRTG 1 cut(s) 531
SseBI AGGCCT 1 cut(s) 624
SspI AATATT 1 cut(s) 767
SspMI CTAG 2 cut(s) 423, 474
StuI AGGCCT 1 cut(s) 624
StyD4I CCNGG 2 cut(s) 560, 781
StyI CCWWGG 2 cut(s) 396, 772
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 3 cut(s) 198, 466, 627
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 3 cut(s) 390, 405, 660
Tru9I TTAA 3 cut(s) 390, 405, 660
TscAI CASTG 2 cut(s) 134, 621
TspDTI ATGAA 2 cut(s) 120, 371
TspGWI ACGGA 2 cut(s) 173, 492
TspRI CASTG 2 cut(s) 134, 621
VpaK11BI GGWCC 1 cut(s) 776
XapI RAATTY 3 cut(s) 415, 718, 728
XceI RCATGY 1 cut(s) 740
XmiI GTMKAC 1 cut(s) 672
XmnI GAANNNNTTC 1 cut(s) 287
XspI CTAG 2 cut(s) 423, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.