Rorug07G0215200

Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000227
Physical Location & Seq
Reverse (-)
19092738 .. 19093954
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0215200.1

Sequence Viewer

Length: 594 bp
ATGGCAGATAACCCTTTTCAGCTCCCTCCTGGTTTTCGATTTTTCCCGACAGATGAAGAGCTCGTAGTCCATTTCCTTCAACGCAAGGCAGCTCTCTTACCCCTCCACCCCGATGTCATTCCTGATCTCGATCTCTATCCATACGATCCATGGGAGCTAAATGGTAAGGCTCTGTCTGAGGGTAAGCAGTGGTACTTCTATAGCAGGAGGACGCAAAATCGGGTTACGAGTAGTGGATATTGGAAGCCGTTAGGCACCGAGGAACCTGTCATATCTTCTACTTCTAACAACAAAATTGGAATCAAAAGATACTTCGGGTTCTACGTGGGAGAAGCTCCTTCAGGGATCAAAACAAACTGGACAATGCATGAGTATCGTCTCTCGGCAGTCTCGGATACTTGCGCTTCTTCTTCCACCCCTAGATCATCAAAGAGAAGAGGGCACCGGAAAGCAGTTAATGAATATAGCGGATACGTGTTATGTCGAGTTTATGAGCGCGGCGAAGATGAGGACGATGATGGGACTGAGCTTTCATGTTTGGACGAGGTGTTCTTATCTTTGGATGATCTTGATGAAATAAGTTTGCCAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PGM_PMM_I PGM_PMM_II PGM_PMM_III

Protein Analysis

197

Amino Acids

22.53

Weight (kDa)

5.05

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 9 - 127 5.3e-36 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 254, 441
AccII CGCG 1 cut(s) 498
AciI CCGC 2 cut(s) 468, 498
AclWI GGATC 2 cut(s) 140, 353
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 28
AloI GAACNNNNNNTCC 2 cut(s) 533, 565
AluBI AGCT 6 cut(s) 22, 61, 92, 157, 335, 529
AluI AGCT 6 cut(s) 22, 61, 92, 157, 335, 529
Alw21I GWGCWC 1 cut(s) 63
Alw26I GTCTC 2 cut(s) 383, 394
AlwI GGATC 2 cut(s) 140, 353
ApeKI GCWGC 1 cut(s) 89
AspLEI GCGC 2 cut(s) 404, 498
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 2 cut(s) 254, 441
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 512
BceAI ACGGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 356, 390
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 2 cut(s) 388, 464
BcoDI GTCTC 2 cut(s) 383, 394
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 199
BfuI GTATCC 2 cut(s) 388, 464
BisI GCNGC 2 cut(s) 90, 499
BlsI GCNGC 2 cut(s) 91, 500
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 256, 264, 443
BmrFI CCNGG 1 cut(s) 30
BsaAI YACGTR 2 cut(s) 325, 475
BsaBI GATNNNNATC 2 cut(s) 129, 135
BsaJI CCNNGG 2 cut(s) 149, 258
BsaWI WCCGGW 1 cut(s) 444
Bse1I ACTGG 1 cut(s) 362
Bse8I GATNNNNATC 2 cut(s) 129, 135
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 149, 258
BseGI GGATG 1 cut(s) 568
BseJI GATNNNNATC 2 cut(s) 129, 135
BseMII CTCAG 2 cut(s) 168, 516
BseNI ACTGG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 498
BshNI GGYRCC 2 cut(s) 254, 441
BsiHKAI GWGCWC 1 cut(s) 63
BsiSI CCGG 1 cut(s) 445
BslFI GGGAC 1 cut(s) 535
BsmAI GTCTC 2 cut(s) 383, 394
BsmBI CGTCTC 1 cut(s) 383
BsmFI GGGAC 1 cut(s) 535
Bsp1286I GDGCHC 2 cut(s) 63, 444
Bsp143I GATC 6 cut(s) 124, 130, 145, 345, 422, 565
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 2 cut(s) 468, 498
BspCNI CTCAG 2 cut(s) 169, 517
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 256, 264, 443
BspPI GGATC 2 cut(s) 140, 353
BspQI GCTCTTC 1 cut(s) 51
BspT107I GGYRCC 2 cut(s) 254, 441
BsrI ACTGG 1 cut(s) 362
BssECI CCNNGG 2 cut(s) 149, 258
BssMI GATC 6 cut(s) 124, 130, 145, 345, 422, 565
BssT1I CCWWGG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 30
Bst6I CTCTTC 2 cut(s) 51, 430
BstBAI YACGTR 2 cut(s) 325, 475
BstDEI CTNAG 2 cut(s) 177, 525
BstDSI CCRYGG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 1 cut(s) 498
BstHHI GCGC 2 cut(s) 404, 498
BstKTI GATC 6 cut(s) 127, 133, 148, 348, 425, 568
BstMAI GTCTC 2 cut(s) 383, 394
BstMBI GATC 6 cut(s) 124, 130, 145, 345, 422, 565
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 101
BsuI GTATCC 2 cut(s) 388, 464
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 568
BtsI GCAGTG 1 cut(s) 194
BtsIMutI CAGTG 1 cut(s) 194
CfoI GCGC 2 cut(s) 404, 498
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 193
CviAII CATG 3 cut(s) 150, 368, 534
CviJI RGCY 8 cut(s) 22, 61, 92, 157, 170, 247, 335, 529
CviKI_1 RGCY 8 cut(s) 22, 61, 92, 157, 170, 247, 335, 529
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 2 cut(s) 177, 525
DpnI GATC 6 cut(s) 126, 132, 147, 347, 424, 567
DpnII GATC 6 cut(s) 124, 130, 145, 345, 422, 565
Eam1104I CTCTTC 2 cut(s) 51, 430
EarI CTCTTC 2 cut(s) 51, 430
Ecl136II GAGCTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 63
Eco53kI GAGCTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 149
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 383
FaeI CATG 3 cut(s) 153, 371, 537
FaiI YATR 9 cut(s) 142, 151, 201, 272, 369, 465, 481, 492, 535
FaqI GGGAC 1 cut(s) 535
FatI CATG 3 cut(s) 149, 367, 533
Fnu4HI GCNGC 2 cut(s) 90, 499
FokI GGATG 1 cut(s) 575
FriOI GRGCYC 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 90, 499
FspBI CTAG 1 cut(s) 420
GlaI GCGC 2 cut(s) 403, 497
GluI GCNGC 2 cut(s) 90, 499
HapII CCGG 1 cut(s) 445
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 404, 498
Hin1II CATG 3 cut(s) 153, 371, 537
Hin6I GCGC 2 cut(s) 402, 496
HinP1I GCGC 2 cut(s) 402, 496
HinfI GANTC 1 cut(s) 300
HpaII CCGG 1 cut(s) 445
Hpy188I TCNGA 2 cut(s) 178, 394
Hpy188III TCNNGA 4 cut(s) 46, 122, 128, 569
HpyAV CCTTC 2 cut(s) 86, 348
HpyCH4IV ACGT 2 cut(s) 324, 474
HpyCH4V TGCA 1 cut(s) 367
HpyF3I CTNAG 2 cut(s) 177, 525
HpySE526I ACGT 2 cut(s) 324, 474
Hsp92II CATG 3 cut(s) 153, 371, 537
HspAI GCGC 2 cut(s) 402, 496
Kzo9I GATC 6 cut(s) 124, 130, 145, 345, 422, 565
LguI GCTCTTC 1 cut(s) 51
LmnI GCTCC 3 cut(s) 27, 154, 340
LpnPI CCDG 8 cut(s) 15, 42, 135, 190, 279, 327, 343, 458
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 324, 474
MaeIII GTNAC 1 cut(s) 223
MalI GATC 6 cut(s) 126, 132, 147, 347, 424, 567
MboI GATC 6 cut(s) 124, 130, 145, 345, 422, 565
MboII GAAGA 6 cut(s) 68, 267, 399, 402, 447, 515
MhlI GDGCHC 2 cut(s) 63, 444
MluCI AATT 1 cut(s) 294
MnlI CCTC 8 cut(s) 36, 113, 172, 201, 253, 431, 502, 538
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 111
MspI CCGG 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MvnI CGCG 1 cut(s) 498
NcoI CCATGG 1 cut(s) 149
NdeII GATC 6 cut(s) 124, 130, 145, 345, 422, 565
NlaIII CATG 3 cut(s) 153, 371, 537
NlaIV GGNNCC 3 cut(s) 256, 264, 443
NmeAIII GCCGAG 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 369
PciSI GCTCTTC 1 cut(s) 51
PcsI WCGNNNNNNNCGW 1 cut(s) 321
PfeI GAWTC 1 cut(s) 300
PkrI GCNGC 2 cut(s) 91, 500
Ppu21I YACGTR 2 cut(s) 325, 475
Psp124BI GAGCTC 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 3 cut(s) 256, 264, 443
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 111
SacI GAGCTC 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 2 cut(s) 90, 499
Sau3AI GATC 6 cut(s) 124, 130, 145, 345, 422, 565
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 63, 444
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 111
Sse9I AATT 1 cut(s) 294
SsiI CCGC 2 cut(s) 468, 498
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 28
StyI CCWWGG 1 cut(s) 149
TaiI ACGT 2 cut(s) 327, 477
TaqI TCGA 3 cut(s) 37, 129, 484
TasI AATT 1 cut(s) 294
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 194
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 4 cut(s) 69, 474, 522, 588
TspRI CASTG 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XspI CTAG 1 cut(s) 420
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.