Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Reverse (-)

16192745 .. 16217395

Gene Structure 24651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG176600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2469 bp

ATGGAGTTGGATAGCATTCTAGGATATCTGGAGAGCAAGACCATCTTAGTTACTGGAGCCACGGGCTTATTAGGAATGGTATTTGTGGAGAAGATTCTAAGGGTTCAACCAAATATTGGAAAGCTCTACCTTCTTATAAGAGCTTCTGATGCCAACTCTGCCACACATCGCATGCGCAATGAGATTATAGAGAAAGAGTTATTTAGGGTTCTTAGAGAAAAATGGGGCACAGATTTTGAATCCTTCATTTCAAAAAAAGTAGTTGCTATTCCGGGAGACGTAGCTTCTACAGAACTAGGAGTGAAAGGATTTGAATTGAGGGAACGACTGTGCAATGAAATACAAATTATACTTCATTCTGCAGCAACCGTGGATTTTAATGACAGGTATGATATTGCTTTGGATGTGAATACATTTGGGGTTCTGCATGTGTTGAACTTTGCGAAGAAGTGTTTGAAACTAGAAATGCTTGTTCACATATCAACTGCTTATGTGGGAGTCGGAAGGAGTGGTCTTATACCGGAGGACTCCTCTCCAATGGATGAGCTGATAAAGGAAATCACTAAATCTGACTTGAAAGTATTGGAAAGGAATATGGCGGTGGACAAATTAAATGAACTAAAAGCACAAAATGCTTCAGAAAAGGTTATTACGAATAAGATGAAGGACCTGGGCGTTGCAAGGTCAAAGTTGTACGGTTGGCCAACTACTTATTTGTTTACAAAAGCGATGGCAGAGGTATATCTTGAACAATCAAAAGGTAATTTACCCATTACCATCATACGCCCAACTATAGTTACGAGCACTTACAAGGAACCATTTCCAGGTTGGCATCAAGGTTACAGATCCGTTAATAGCGTAATTGGCACTTTTTGGAAAGGGGCACTGACATGCTTGCCTATAGATCCTACAGCTGTAATGGATTTGATTCCAGTTGATATGGTGGCAGATTCAATAATTACGGCGATGGTAGTGAATGCCAACAAATATCTTGAAAATCCTGGAATGATTTATCATGTGGGAACGTCCTTGAGAAATCCAATTAAAATGTCTGAGTTTTCAAATTTCATGTTCCAATACTGCACCGAAAATCCATGGCTTTATAAGGATGGAAGCCCGATCAAGGTTGAGAAGTTGAAAATGTTCACAACTATGGCTGCATTTCGTTCGTACATGCAAATCCGCTACATGTTACCATTGGAGGGATTAAAGTTCTTGAATAAAGAATTTGACCAATATTTTAAAGAATTATATGTTAACTATAACCGGAAAATAACATTTGCGATGGGGTTGGCTGAGTTGTACCGACCATTTTCGCTATACAAGGCCATTGAACATGTGGATGCTGCTAAAAAGAAGAGAGGTCGACGCTCACTACAAGACTCAGAGAGATTGGCAAATTTATCTTTTGCTGCATACTTCAAGAAACTTATTGAAGAAAAGGCCTGGAATGGTGATAGTACTATCAATCCTGATATCACAGCATTAGCTGCTGGCCCTGTTAAAAAAGCTGGAAGATACAAGAGATATGTTATAAACGGTTTCCGCTTTCATGTGAAGTCCCTGGACACCGGATCCAATGCTCAAAATAGTGGAATTTTTGTTAGTGCTGGAAGAAATTGTTATTCTACTGCTCATGACCTCCAACCAAGAGATGGAATGCAGGATTATTACGGTGTATTAACAGATATCATAGAGCTAAACTACCAGCGTAATGATAATGAAGATGATGAGTTAAACGGAGTCAATGGGGATGATAATGGAAGAGGAAAGAACATAATCAAATGGGGCAGGAACGGAGTGAGGGAAAATGTTTTGTGGGATGATGGGGGTGCTCCAATATGGCCAACACAGAAGTGTGGGGAGTTTTCTCGCTACCTTGGATATTTGGCAAGTGATGGTGGACTGTATCCTATCGATGTGCCATCCTTCACTGAATTTAAAAAGGGAGATAACCATGATAGGATGTGGGAAAAGGTTCAGGGAACTATTGATTGGTCCAATCCAGAGACAGAAAAAAGAAAATTCACAATTAGGAAGTATGTAATAGACATTATCAATGACCGTTGGAGACATCATAAGCATATACTGAAGAAGAAATTTTGGGAACCTTATCAGAATTCTCCTTCAAGGTTCGTGTGCAGCGACAATACTGTTGACAGTGGTCAATGGGTAAGGTTTGTGACCAGGTTGGAAAAGGCAGAGACAAAGGAAAAAGCTGCAATTAATGTCAGAAATAGGAAACAAAAGAAGATGAGCCATACTACTAGAACAATGACTTATGCAGCAAAAATTTATAAATGGCAACTAGAAAACAAAAAGGATGCACCGCCTAACCGTAAAGAGAGATTCAAGATAACCCACCTAAAGAAGGGATCTAAAACAGAGTACATTGATGAAGCATCAACACAAGCTGTGGATTCAAAACTTTTTGCCAGTGATGCAATCACTAAACATCTGAAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

822

Amino Acids

94.06

Weight (kDa)

9.27

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	17 - 319	6.2e-69	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	137, 1104, 1535, 2298
Acc16I	TGCGCA	1 cut(s)	176
AccB7I	CCANNNNNTGG	2 cut(s)	116, 1655
AccI	GTMKAC	1 cut(s)	1366
AciI	CCGC	4 cut(s)	599, 1183, 1546, 2330
AclWI	GGATC	5 cut(s)	840, 899, 1569, 1582, 2383
AcoI	YGGCCR	2 cut(s)	701, 1844
AcsI	RAATTY	9 cut(s)	1063, 1226, 1399, 1596, 1937, 2024, 2099, 2119, 2292
AcuI	CTGAAG	2 cut(s)	621, 2111
AfaI	GTAC	5 cut(s)	695, 1172, 1304, 1462, 2390
AfiI	CCNNNNNNNGG	6 cut(s)	116, 824, 1123, 1202, 1655, 2371
AflIII	ACRYGT	2 cut(s)	1188, 1336
AjnI	CCWGG	6 cut(s)	669, 823, 1000, 1445, 1563, 2186
AjuI	GAANNNNNNNTTGG	2 cut(s)	1978, 2010
AleI	CACNNNNGTG	1 cut(s)	1855
Alw21I	GWGCWC	2 cut(s)	806, 1837
Alw26I	GTCTC	4 cut(s)	270, 2003, 2065, 2198
AlwI	GGATC	5 cut(s)	840, 899, 1569, 1582, 2383
AoxI	GGCC	5 cut(s)	701, 1326, 1443, 1495, 1844
ApeKI	GCWGC	8 cut(s)	362, 1157, 1346, 1412, 1490, 2142, 2219, 2285
ApoI	RAATTY	9 cut(s)	1063, 1226, 1399, 1596, 1937, 2024, 2099, 2119, 2292
AseI	ATTAAT	1 cut(s)	2226
Asp700I	GAANNNNTTC	3 cut(s)	819, 1142, 1977
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	667, 1496, 1998
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	1466
AvaII	GGWCC	2 cut(s)	667, 1998
BaeGI	GKGCMC	2 cut(s)	230, 886
BalI	TGGCCA	2 cut(s)	703, 1846
BamHI	GGATCC	1 cut(s)	1574
Bbv12I	GWGCWC	2 cut(s)	806, 1837
BbvI	GCAGC	8 cut(s)	374, 1144, 1333, 1399, 1477, 2154, 2206, 2297
BceAI	ACGGC	1 cut(s)	978
BcgI	CGANNNNNNTGC	2 cut(s)	1149, 1183
BciT130I	CCWGG	6 cut(s)	671, 825, 1002, 1447, 1565, 2188
BciVI	GTATCC	1 cut(s)	1920
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	4 cut(s)	270, 2003, 2065, 2198
BfaI	CTAG	6 cut(s)	20, 296, 461, 2268, 2309, 2467
BfmI	CTRYAG	5 cut(s)	288, 360, 792, 900, 909
BfuI	GTATCC	1 cut(s)	1920
BisI	GCNGC	8 cut(s)	363, 1158, 1347, 1413, 1491, 2143, 2220, 2286
BlsI	GCNGC	8 cut(s)	364, 1159, 1348, 1414, 1492, 2144, 2221, 2287
BmcAI	AGTACT	1 cut(s)	1462
Bme1390I	CCNGG	7 cut(s)	273, 671, 825, 1002, 1447, 1565, 2188
Bme18I	GGWCC	2 cut(s)	667, 1998
BmgT120I	GGNCC	3 cut(s)	667, 1496, 1998
BmiI	GGNNCC	4 cut(s)	58, 816, 1576, 2109
BmrFI	CCNGG	7 cut(s)	273, 671, 825, 1002, 1447, 1565, 2188
BmsI	GCATC	6 cut(s)	139, 841, 1333, 2314, 2411, 2431
BoxI	GACNNNNGTC	1 cut(s)	2163
BplI	GAGNNNNNCTC	2 cut(s)	515, 547
BpmI	CTGGAG	2 cut(s)	50, 75
BpuEI	CTTGAG	1 cut(s)	1051
BpuMI	CCSGG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	1917
BsaJI	CCNNGG	6 cut(s)	60, 369, 670, 1094, 1563, 1879
BsaWI	WCCGGW	3 cut(s)	520, 1266, 1571
Bsc4I	CCNNNNNNNGG	6 cut(s)	116, 824, 1123, 1202, 1655, 2371
Bse1I	ACTGG	3 cut(s)	58, 932, 2436
Bse3DI	GCAATG	2 cut(s)	184, 340
BseBI	CCWGG	6 cut(s)	671, 825, 1002, 1447, 1565, 2188
BseCI	ATCGAT	1 cut(s)	1917
BseDI	CCNNGG	6 cut(s)	60, 369, 670, 1094, 1563, 1879
BseGI	GGATG	9 cut(s)	409, 547, 1114, 1348, 1759, 1828, 1925, 1971, 2329
BseLI	CCNNNNNNNGG	6 cut(s)	116, 824, 1123, 1202, 1655, 2371
BseMI	GCAATG	2 cut(s)	184, 340
BseMII	CTCAG	3 cut(s)	1044, 1287, 1398
BseNI	ACTGG	3 cut(s)	58, 932, 2436
BseRI	GAGGAG	1 cut(s)	520
BseSI	GKGCMC	2 cut(s)	230, 886
BseXI	GCAGC	8 cut(s)	374, 1144, 1333, 1399, 1477, 2154, 2206, 2297
BsgI	GTGCAG	2 cut(s)	1066, 2161
BshFI	GGCC	5 cut(s)	703, 1328, 1445, 1497, 1846
BshVI	ATCGAT	1 cut(s)	1917
BsiHKAI	GWGCWC	2 cut(s)	806, 1837
BsiSI	CCGG	4 cut(s)	272, 521, 1267, 1572
BslFI	GGGAC	1 cut(s)	1546
BslI	CCNNNNNNNGG	6 cut(s)	116, 824, 1123, 1202, 1655, 2371
BsmAI	GTCTC	4 cut(s)	270, 2003, 2065, 2198
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	1546
BsmI	GAATGC	3 cut(s)	15, 982, 1665
BsnI	GGCC	5 cut(s)	703, 1328, 1445, 1497, 1846
Bsp1286I	GDGCHC	4 cut(s)	230, 806, 886, 1837
Bsp143I	GATC	5 cut(s)	845, 904, 1119, 1574, 2375
Bsp19I	CCATGG	1 cut(s)	1094
BspACI	CCGC	4 cut(s)	599, 1183, 1546, 2330
BspANI	GGCC	5 cut(s)	703, 1328, 1445, 1497, 1846
BspCNI	CTCAG	3 cut(s)	1045, 1288, 1397
BspDI	ATCGAT	1 cut(s)	1917
BspHI	TCATGA	1 cut(s)	1636
BspLI	GGNNCC	4 cut(s)	58, 816, 1576, 2109
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	5 cut(s)	840, 899, 1569, 1582, 2383
BsrDI	GCAATG	2 cut(s)	184, 340
BsrI	ACTGG	3 cut(s)	58, 932, 2436
BssECI	CCNNGG	6 cut(s)	60, 369, 670, 1094, 1563, 1879
BssMI	GATC	5 cut(s)	845, 904, 1119, 1574, 2375
BssT1I	CCWWGG	2 cut(s)	1094, 1879
Bst2UI	CCWGG	6 cut(s)	671, 825, 1002, 1447, 1565, 2188
Bst6I	CTCTTC	2 cut(s)	1352, 1759
BstAPI	GCANNNNNTGC	2 cut(s)	632, 1490
BstC8I	GCNNGC	3 cut(s)	173, 896, 1495
BstDEI	CTNAG	6 cut(s)	46, 98, 212, 1053, 1296, 1384
BstDSI	CCRYGG	3 cut(s)	60, 369, 1094
BstENI	CCTNNNNNAGG	1 cut(s)	2369
BstF5I	GGATG	9 cut(s)	409, 547, 1114, 1348, 1759, 1828, 1925, 1971, 2329
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	5 cut(s)	848, 907, 1122, 1577, 2378
BstMAI	GTCTC	4 cut(s)	270, 2003, 2065, 2198
BstMBI	GATC	5 cut(s)	845, 904, 1119, 1574, 2375
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 158, 632, 864, 1490, 2441
BstNI	CCWGG	6 cut(s)	671, 825, 1002, 1447, 1565, 2188
BstNSI	RCATGY	6 cut(s)	175, 431, 894, 1177, 1192, 1340
BstPAI	GACNNNNGTC	1 cut(s)	2163
BstSCI	CCNGG	7 cut(s)	271, 669, 823, 1000, 1445, 1563, 2186
BstSFI	CTRYAG	5 cut(s)	288, 360, 792, 900, 909
BstSLI	GKGCMC	2 cut(s)	230, 886
BstV1I	GCAGC	8 cut(s)	374, 1144, 1333, 1399, 1477, 2154, 2206, 2297
BstX2I	RGATCY	4 cut(s)	845, 904, 1574, 2375
BstYI	RGATCY	4 cut(s)	845, 904, 1574, 2375
Bsu15I	ATCGAT	1 cut(s)	1917
BsuI	GTATCC	1 cut(s)	1920
BsuRI	GGCC	5 cut(s)	703, 1328, 1445, 1497, 1846
BsuTUI	ATCGAT	1 cut(s)	1917
BtgI	CCRYGG	3 cut(s)	60, 369, 1094
BtgZI	GCGATG	4 cut(s)	152, 743, 980, 1298
BtsCI	GGATG	9 cut(s)	409, 547, 1114, 1348, 1759, 1828, 1925, 1971, 2329
BtsIMutI	CAGTG	4 cut(s)	884, 1932, 2167, 2443
Cac8I	GCNNGC	3 cut(s)	173, 896, 1495
CciI	TCATGA	1 cut(s)	1636
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	3 cut(s)	667, 1496, 1998
ClaI	ATCGAT	1 cut(s)	1917
CseI	GACGC	1 cut(s)	1377
CsiI	ACCWGGT	1 cut(s)	2186
Csp6I	GTAC	5 cut(s)	694, 1171, 1303, 1461, 2389
CviQI	GTAC	5 cut(s)	694, 1171, 1303, 1461, 2389
DdeI	CTNAG	6 cut(s)	46, 98, 212, 1053, 1296, 1384
DpnI	GATC	5 cut(s)	847, 906, 1121, 1576, 2377
DpnII	GATC	5 cut(s)	845, 904, 1119, 1574, 2375
DraI	TTTAAA	2 cut(s)	1243, 1942
EaeI	YGGCCR	2 cut(s)	701, 1844
Eam1104I	CTCTTC	2 cut(s)	1352, 1759
EarI	CTCTTC	2 cut(s)	1352, 1759
Eco130I	CCWWGG	2 cut(s)	1094, 1879
Eco147I	AGGCCT	1 cut(s)	1445
Eco32I	GATATC	3 cut(s)	26, 1477, 1690
Eco47I	GGWCC	2 cut(s)	667, 1998
Eco57I	CTGAAG	2 cut(s)	621, 2111
EcoNI	CCTNNNNNAGG	1 cut(s)	2369
EcoO109I	RGGNCCY	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	2119
EcoRII	CCWGG	6 cut(s)	669, 823, 1000, 1445, 1563, 2186
EcoRV	GATATC	3 cut(s)	26, 1477, 1690
EcoT14I	CCWWGG	2 cut(s)	1094, 1879
ErhI	CCWWGG	2 cut(s)	1094, 1879
Esp3I	CGTCTC	1 cut(s)	270
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	1546
FblI	GTMKAC	1 cut(s)	1366
Fnu4HI	GCNGC	8 cut(s)	363, 1158, 1347, 1413, 1491, 2143, 2220, 2286
FokI	GGATG	9 cut(s)	416, 554, 1121, 1355, 1766, 1835, 1912, 1978, 2336
Fsp4HI	GCNGC	8 cut(s)	363, 1158, 1347, 1413, 1491, 2143, 2220, 2286
FspBI	CTAG	6 cut(s)	20, 296, 461, 2268, 2309, 2467
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	8 cut(s)	363, 1158, 1347, 1413, 1491, 2143, 2220, 2286
GsuI	CTGGAG	2 cut(s)	50, 75
HaeIII	GGCC	5 cut(s)	703, 1328, 1445, 1497, 1846
HapII	CCGG	4 cut(s)	272, 521, 1267, 1572
HgaI	GACGC	1 cut(s)	1377
HhaI	GCGC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	3 cut(s)	1258, 1367, 2158
HindII	GTYRAC	3 cut(s)	1258, 1367, 2158
HpaI	GTTAAC	1 cut(s)	1258
HpaII	CCGG	4 cut(s)	272, 521, 1267, 1572
HphI	GGTGA	1 cut(s)	1466
Hpy166II	GTNNAC	8 cut(s)	475, 604, 720, 1146, 1258, 1367, 1904, 2158
Hpy188I	TCNGA	9 cut(s)	148, 503, 571, 640, 1054, 1387, 2118, 2234, 2460
Hpy188III	TCNNGA	9 cut(s)	29, 746, 992, 1216, 1423, 1472, 1637, 2006, 2353
Hpy8I	GTNNAC	8 cut(s)	475, 604, 720, 1146, 1258, 1367, 1904, 2158
Hpy99I	CGWCG	1 cut(s)	1371
HpyAV	CCTTC	7 cut(s)	140, 253, 498, 658, 1939, 2136, 2365
HpyCH4IV	ACGT	2 cut(s)	279, 1025
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 158, 632, 864, 1490, 2441
HpyF3I	CTNAG	6 cut(s)	46, 98, 212, 1053, 1296, 1384
HpySE526I	ACGT	2 cut(s)	279, 1025
HspAI	GCGC	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	1258
Kzo9I	GATC	5 cut(s)	845, 904, 1119, 1574, 2375
LmnI	GCTCC	2 cut(s)	56, 1840
Lsp1109I	GCAGC	8 cut(s)	374, 1144, 1333, 1399, 1477, 2154, 2206, 2297
LweI	GCATC	6 cut(s)	139, 841, 1333, 2314, 2411, 2431
MabI	ACCWGGT	1 cut(s)	2186
MaeI	CTAG	6 cut(s)	20, 296, 461, 2268, 2309, 2467
MaeII	ACGT	2 cut(s)	279, 1025
MaeIII	GTNAC	5 cut(s)	49, 796, 839, 1191, 2182
MalI	GATC	5 cut(s)	847, 906, 1121, 1576, 2377
MboI	GATC	5 cut(s)	845, 904, 1119, 1574, 2375
MflI	RGATCY	4 cut(s)	845, 904, 1574, 2375
MhlI	GDGCHC	4 cut(s)	230, 806, 886, 1837
MlsI	TGGCCA	2 cut(s)	703, 1846
MluNI	TGGCCA	2 cut(s)	703, 1846
MlyI	GAGTC	4 cut(s)	507, 521, 1376, 1752
MmeI	TCCRAC	4 cut(s)	481, 1669, 2048, 2172
MnlI	CCTC	9 cut(s)	312, 517, 541, 730, 1195, 1355, 1652, 1760, 1797
Mox20I	TGGCCA	2 cut(s)	703, 1846
MroXI	GAANNNNTTC	3 cut(s)	819, 1142, 1977
MscI	TGGCCA	2 cut(s)	703, 1846
MslI	CAYNNNNRTG	4 cut(s)	889, 1151, 1341, 1855
Msp20I	TGGCCA	2 cut(s)	703, 1846
MspA1I	CMGCKG	1 cut(s)	914
MspI	CCGG	4 cut(s)	272, 521, 1267, 1572
MspR9I	CCNGG	7 cut(s)	273, 671, 825, 1002, 1447, 1565, 2188
Mva1269I	GAATGC	3 cut(s)	15, 982, 1665
MvaI	CCWGG	6 cut(s)	671, 825, 1002, 1447, 1565, 2188
MwoI	GCNNNNNNNGC	6 cut(s)	149, 158, 632, 864, 1490, 2441
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	1094
NdeII	GATC	5 cut(s)	845, 904, 1119, 1574, 2375
NlaIV	GGNNCC	4 cut(s)	58, 816, 1576, 2109
NmuCI	GTSAC	1 cut(s)	2182
NsbI	TGCGCA	1 cut(s)	176
NspI	RCATGY	6 cut(s)	175, 431, 894, 1177, 1192, 1340
OliI	CACNNNNGTG	1 cut(s)	1855
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	1636
PceI	AGGCCT	1 cut(s)	1445
PciI	ACATGT	2 cut(s)	1188, 1336
PcsI	WCGNNNNNNNCGW	1 cut(s)	2142
PctI	GAATGC	3 cut(s)	15, 982, 1665
PdmI	GAANNNNTTC	3 cut(s)	819, 1142, 1977
PfeI	GAWTC	6 cut(s)	94, 239, 928, 950, 2349, 2420
PflMI	CCANNNNNTGG	2 cut(s)	116, 1655
PfoI	TCCNGGA	2 cut(s)	271, 1000
PkrI	GCNGC	8 cut(s)	364, 1159, 1348, 1414, 1492, 2144, 2221, 2287
PleI	GAGTC	4 cut(s)	506, 521, 1376, 1751
PpsI	GAGTC	4 cut(s)	506, 521, 1376, 1751
PpuMI	RGGWCCY	1 cut(s)	667
PscI	ACATGT	2 cut(s)	1188, 1336
PshAI	GACNNNNGTC	1 cut(s)	2163
PshBI	ATTAAT	1 cut(s)	2226
PsiI	TTATAA	4 cut(s)	137, 1104, 1535, 2298
Psp5II	RGGWCCY	1 cut(s)	667
Psp6I	CCWGG	6 cut(s)	669, 823, 1000, 1445, 1563, 2186
PspGI	CCWGG	6 cut(s)	669, 823, 1000, 1445, 1563, 2186
PspN4I	GGNNCC	4 cut(s)	58, 816, 1576, 2109
PspPI	GGNCC	3 cut(s)	667, 1496, 1998
PspPPI	RGGWCCY	1 cut(s)	667
PstI	CTGCAG	1 cut(s)	364
PsuI	RGATCY	4 cut(s)	845, 904, 1574, 2375
PvuII	CAGCTG	1 cut(s)	914
RsaI	GTAC	5 cut(s)	695, 1172, 1304, 1462, 2390
RsaNI	GTAC	5 cut(s)	694, 1171, 1303, 1461, 2389
RseI	CAYNNNNRTG	4 cut(s)	889, 1151, 1341, 1855
SalI	GTCGAC	1 cut(s)	1365
SatI	GCNGC	8 cut(s)	363, 1158, 1347, 1413, 1491, 2143, 2220, 2286
Sau3AI	GATC	5 cut(s)	845, 904, 1119, 1574, 2375
Sau96I	GGNCC	3 cut(s)	667, 1496, 1998
ScaI	AGTACT	1 cut(s)	1462
SchI	GAGTC	4 cut(s)	507, 521, 1376, 1752
ScrFI	CCNGG	7 cut(s)	273, 671, 825, 1002, 1447, 1565, 2188
SduI	GDGCHC	4 cut(s)	230, 806, 886, 1837
SexAI	ACCWGGT	1 cut(s)	2186
SfaNI	GCATC	6 cut(s)	139, 841, 1333, 2314, 2411, 2431
SfcI	CTRYAG	5 cut(s)	288, 360, 792, 900, 909
SinI	GGWCC	2 cut(s)	667, 1998
SmiMI	CAYNNNNRTG	4 cut(s)	889, 1151, 1341, 1855
SmlI	CTYRAG	1 cut(s)	1030
SmoI	CTYRAG	1 cut(s)	1030
SphI	GCATGC	1 cut(s)	175
SseBI	AGGCCT	1 cut(s)	1445
SsiI	CCGC	4 cut(s)	599, 1183, 1546, 2330
SspI	AATATT	2 cut(s)	115, 1238
SspMI	CTAG	6 cut(s)	20, 296, 461, 2268, 2309, 2467
StuI	AGGCCT	1 cut(s)	1445
StyD4I	CCNGG	7 cut(s)	271, 669, 823, 1000, 1445, 1563, 2186
StyI	CCWWGG	2 cut(s)	1094, 1879
TaiI	ACGT	2 cut(s)	282, 1028
TaqI	TCGA	2 cut(s)	1366, 1917
TatI	WGTACW	2 cut(s)	1460, 2388
TfiI	GAWTC	6 cut(s)	94, 239, 928, 950, 2349, 2420
TscAI	CASTG	4 cut(s)	891, 1939, 2167, 2443
TseFI	GTSAC	1 cut(s)	2182
TseI	GCWGC	8 cut(s)	362, 1157, 1346, 1412, 1490, 2142, 2219, 2285
Tsp45I	GTSAC	1 cut(s)	2182
TspDTI	ATGAA	9 cut(s)	235, 344, 351, 630, 677, 1057, 1541, 1737, 2412
TspGWI	ACGGA	3 cut(s)	838, 1755, 1812
TspRI	CASTG	4 cut(s)	891, 1939, 2167, 2443
Van91I	CCANNNNNTGG	2 cut(s)	116, 1655
VpaK11BI	GGWCC	2 cut(s)	667, 1998
VspI	ATTAAT	1 cut(s)	2226
XagI	CCTNNNNNAGG	1 cut(s)	2369
XapI	RAATTY	9 cut(s)	1063, 1226, 1399, 1596, 1937, 2024, 2099, 2119, 2292
XceI	RCATGY	6 cut(s)	175, 431, 894, 1177, 1192, 1340
XcmI	CCANNNNNNNNNTGG	3 cut(s)	825, 1336, 1652
XmiI	GTMKAC	1 cut(s)	1366
XmnI	GAANNNNTTC	3 cut(s)	819, 1142, 1977
XspI	CTAG	6 cut(s)	20, 296, 461, 2268, 2309, 2467
ZrmI	AGTACT	1 cut(s)	1462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.