Rroxscaffold_1G00036940

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
53936469 .. 53940551
4083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036940.1

Sequence Viewer

Length: 945 bp
ATGGATAAGATGGTAAAGGAGATGGGTAATTTTGATTTTGAAGCAGTGGAAAAGGGACTTGTGCAGGAGAAATTGAATGAACTAAAAGCACTAGATGCTTCAGAAGAAGTTGTTACAAACACAATGAAGGATTTTGGCATTAAAAGGGCTAGACTATATGGATGGCCAAACACGTATGTGTTCACAAAAGCAATGGGTGAAATATTTCTACAACGCTCGAAAGACAATTTGCCTCTTGTGGTCGTACGTCCAACAATAGTTACTAGCACTTACAAAGAACCATTTTCCGGTTGGATCCAAGGTTTCAGAACTATTGATAGTGTAATTGCTGGTTATTGCAAAGGCAAGCTGACATGCTTGCTTGTCGATCCTGCAACAGTACTTGATATGATTCCTGTTGACATGTTGGTAAATTCAATAATCATAGCAATGGTAGCAAATGCAAATCAGTCTTCTGGAAATATTATTTATCATGTCGGATCCTCACTGAGAAACCCTTTGAATTTCTTTCAAATGCACAACTTTATCTTCCAATATTTCACCAAGAATCCATGGCTTGATAAGGATGGTATGCCTGTCATTGTTACCAAGGGTACAATATTGACGACTATGGCTACTTTTCGCATGTACATGAATATTCGCTACATGCTACCTTTGAAGGGATTGAAGTTCATGAACAAAGTATTCGGCCAGTATTTCCAAGAGATATATGTCAACTATAGTCGGAAACTCGACTTAGTCATGCGTTTGGTAGAGCTATACGAACCCTATATGCTATTCAAAGGAATCTTTGATGACACCAATACAGAGAAGTTGTGGAGGACAGCAAGGGAGAGTTTCATAGAGGTTGAAAGTTTTAATTTTGATGCGACATGCATAGATTGGGAAGAGTACATCATGCATAGTCACATTCCTGGCCTCCTAAAACATGTTTTGATCAAATGA

Protein Analysis

314

Amino Acids

36.41

Weight (kDa)

7.66

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_4 PF07993 23 - 140 5.8e-24 Male sterility protein
Sterile PF03015 215 - 312 6.9e-17 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 289, 302, 362, 474, 487
AcoI YGGCCR 2 cut(s) 164, 688
AcsI RAATTY 2 cut(s) 412, 502
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 5 cut(s) 246, 381, 595, 629, 893
AfiI CCNNNNNNNGG 2 cut(s) 287, 659
AflIII ACRYGT 3 cut(s) 171, 402, 928
AgsI TTSAA 9 cut(s) 41, 76, 417, 502, 512, 658, 667, 781, 851
AjnI CCWGG 1 cut(s) 913
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 2 cut(s) 349, 757
AluI AGCT 2 cut(s) 349, 757
AlwI GGATC 5 cut(s) 289, 302, 362, 474, 487
AoxI GGCC 3 cut(s) 164, 688, 916
ApoI RAATTY 2 cut(s) 412, 502
Asp700I GAANNNNTTC 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 209, 532
BalI TGGCCA 1 cut(s) 166
BamHI GGATCC 2 cut(s) 294, 479
BbsI GAAGAC 1 cut(s) 444
BccI CCATC 4 cut(s) 4, 16, 156, 560
BciT130I CCWGG 1 cut(s) 915
BclI TGATCA 1 cut(s) 936
BfaI CTAG 3 cut(s) 92, 150, 264
BfmI CTRYAG 1 cut(s) 718
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 915
BmiI GGNNCC 2 cut(s) 296, 481
BmrFI CCNGG 1 cut(s) 915
BmsI GCATC 2 cut(s) 85, 856
BpiI GAAGAC 1 cut(s) 444
BsaAI YACGTR 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 298, 551, 588
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 659
Bse1I ACTGG 1 cut(s) 691
Bse3DI GCAATG 2 cut(s) 198, 435
BseBI CCWGG 1 cut(s) 915
BseDI CCNNGG 3 cut(s) 298, 551, 588
BseGI GGATG 2 cut(s) 167, 571
BseLI CCNNNNNNNGG 2 cut(s) 287, 659
BseMI GCAATG 2 cut(s) 198, 435
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 83
BshFI GGCC 3 cut(s) 166, 690, 918
BsiSI CCGG 1 cut(s) 288
BsiWI CGTACG 1 cut(s) 244
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 2 cut(s) 287, 659
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 3 cut(s) 166, 690, 918
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 4 cut(s) 294, 367, 479, 936
Bsp19I CCATGG 1 cut(s) 551
BspANI GGCC 3 cut(s) 166, 690, 918
BspCNI CTCAG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 672
BspLI GGNNCC 2 cut(s) 296, 481
BspPI GGATC 5 cut(s) 289, 302, 362, 474, 487
BsrDI GCAATG 2 cut(s) 198, 435
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 1 cut(s) 691
BssECI CCNNGG 3 cut(s) 298, 551, 588
BssMI GATC 4 cut(s) 294, 367, 479, 936
BssT1I CCWWGG 3 cut(s) 298, 551, 588
Bst2UI CCWGG 1 cut(s) 915
Bst4CI ACNGT 1 cut(s) 379
Bst6I CTCTTC 1 cut(s) 882
BstAPI GCANNNNNTGC 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 627
BstBAI YACGTR 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 347, 359
BstDEI CTNAG 2 cut(s) 488, 736
BstDSI CCRYGG 1 cut(s) 551
BstF5I GGATG 2 cut(s) 167, 571
BstKTI GATC 4 cut(s) 297, 370, 482, 939
BstMBI GATC 4 cut(s) 294, 367, 479, 936
BstMWI GCNNNNNNNGC 2 cut(s) 95, 434
BstNI CCWGG 1 cut(s) 915
BstNSI RCATGY 6 cut(s) 357, 406, 628, 649, 876, 932
BstSCI CCNGG 1 cut(s) 913
BstSFI CTRYAG 1 cut(s) 718
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 294, 479
BstYI RGATCY 2 cut(s) 294, 479
BsuRI GGCC 3 cut(s) 166, 690, 918
BtgI CCRYGG 1 cut(s) 551
BtsCI GGATG 2 cut(s) 167, 571
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 485
Cac8I GCNNGC 2 cut(s) 347, 359
CciI TCATGA 1 cut(s) 672
Csp6I GTAC 5 cut(s) 245, 380, 594, 628, 892
CviJI RGCY 8 cut(s) 149, 166, 349, 556, 614, 690, 757, 918
CviKI_1 RGCY 8 cut(s) 149, 166, 349, 556, 614, 690, 757, 918
CviQI GTAC 5 cut(s) 245, 380, 594, 628, 892
DdeI CTNAG 2 cut(s) 488, 736
DpnI GATC 4 cut(s) 296, 369, 481, 938
DpnII GATC 4 cut(s) 294, 367, 479, 936
EaeI YGGCCR 2 cut(s) 164, 688
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Eco130I CCWWGG 3 cut(s) 298, 551, 588
Eco57I CTGAAG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 913
EcoT14I CCWWGG 3 cut(s) 298, 551, 588
EcoT22I ATGCAT 2 cut(s) 878, 903
ErhI CCWWGG 3 cut(s) 298, 551, 588
FaqI GGGAC 1 cut(s) 69
FbaI TGATCA 1 cut(s) 936
FokI GGATG 2 cut(s) 174, 578
FspBI CTAG 3 cut(s) 92, 150, 264
HaeIII GGCC 3 cut(s) 166, 690, 918
HapII CCGG 1 cut(s) 288
HincII GTYRAC 2 cut(s) 400, 715
HindII GTYRAC 2 cut(s) 400, 715
HinfI GANTC 3 cut(s) 391, 547, 786
HpaII CCGG 1 cut(s) 288
HphI GGTGA 2 cut(s) 209, 532
Hpy166II GTNNAC 3 cut(s) 183, 400, 715
Hpy188I TCNGA 4 cut(s) 103, 308, 479, 726
Hpy188III TCNNGA 2 cut(s) 456, 673
Hpy8I GTNNAC 3 cut(s) 183, 400, 715
HpyAV CCTTC 2 cut(s) 121, 652
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 173, 247
HpyCH4V TGCA 7 cut(s) 64, 339, 374, 443, 517, 876, 901
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 434
HpyF3I CTNAG 2 cut(s) 488, 736
HpySE526I ACGT 2 cut(s) 173, 247
Ksp22I TGATCA 1 cut(s) 936
Kzo9I GATC 4 cut(s) 294, 367, 479, 936
LweI GCATC 2 cut(s) 85, 856
MaeI CTAG 3 cut(s) 92, 150, 264
MaeII ACGT 2 cut(s) 173, 247
MaeIII GTNAC 4 cut(s) 112, 259, 583, 905
MalI GATC 4 cut(s) 296, 369, 481, 938
MboI GATC 4 cut(s) 294, 367, 479, 936
MboII GAAGA 4 cut(s) 116, 444, 520, 899
MflI RGATCY 2 cut(s) 294, 479
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 7 cut(s) 28, 71, 226, 324, 412, 502, 859
MluNI TGGCCA 1 cut(s) 166
MmeI TCCRAC 4 cut(s) 272, 275, 457, 704
MnlI CCTC 5 cut(s) 243, 493, 813, 838, 929
Mox20I TGGCCA 1 cut(s) 166
Mph1103I ATGCAT 2 cut(s) 878, 903
MroXI GAANNNNTTC 1 cut(s) 204
MscI TGGCCA 1 cut(s) 166
MseI TTAA 2 cut(s) 141, 858
MslI CAYNNNNRTG 3 cut(s) 176, 428, 629
Msp20I TGGCCA 1 cut(s) 166
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 915
MvaI CCWGG 1 cut(s) 915
MwoI GCNNNNNNNGC 2 cut(s) 95, 434
NcoI CCATGG 1 cut(s) 551
NdeII GATC 4 cut(s) 294, 367, 479, 936
NlaIV GGNNCC 2 cut(s) 296, 481
NmuCI GTSAC 1 cut(s) 905
NsiI ATGCAT 2 cut(s) 878, 903
NspI RCATGY 6 cut(s) 357, 406, 628, 649, 876, 932
OliI CACNNNNGTG 1 cut(s) 176
PagI TCATGA 1 cut(s) 672
PciI ACATGT 2 cut(s) 402, 928
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 3 cut(s) 391, 547, 786
Pfl23II CGTACG 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 737
Ppu21I YACGTR 1 cut(s) 174
PscI ACATGT 2 cut(s) 402, 928
Psp6I CCWGG 1 cut(s) 913
PspGI CCWGG 1 cut(s) 913
PspLI CGTACG 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 296, 481
PsuI RGATCY 2 cut(s) 294, 479
PsyI GACNNNGTC 1 cut(s) 737
RsaI GTAC 5 cut(s) 246, 381, 595, 629, 893
RsaNI GTAC 5 cut(s) 245, 380, 594, 628, 892
RseI CAYNNNNRTG 3 cut(s) 176, 428, 629
SaqAI TTAA 2 cut(s) 141, 858
Sau3AI GATC 4 cut(s) 294, 367, 479, 936
ScaI AGTACT 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 915
SetI ASST 7 cut(s) 176, 250, 304, 351, 655, 759, 849
SfaNI GCATC 2 cut(s) 85, 856
SfcI CTRYAG 1 cut(s) 718
SmiMI CAYNNNNRTG 3 cut(s) 176, 428, 629
Sse9I AATT 7 cut(s) 28, 71, 226, 324, 412, 502, 859
SspI AATATT 5 cut(s) 204, 463, 536, 600, 637
SspMI CTAG 3 cut(s) 92, 150, 264
StyD4I CCNGG 1 cut(s) 913
StyI CCWWGG 3 cut(s) 298, 551, 588
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 2 cut(s) 176, 250
TaqI TCGA 3 cut(s) 218, 366, 732
TasI AATT 7 cut(s) 28, 71, 226, 324, 412, 502, 859
TatI WGTACW 3 cut(s) 379, 627, 891
TfiI GAWTC 3 cut(s) 391, 547, 786
Tru1I TTAA 2 cut(s) 141, 858
Tru9I TTAA 2 cut(s) 141, 858
TscAI CASTG 2 cut(s) 51, 492
TseFI GTSAC 1 cut(s) 905
Tsp45I GTSAC 1 cut(s) 905
TspDTI ATGAA 6 cut(s) 93, 140, 647, 661, 689, 829
TspRI CASTG 2 cut(s) 51, 492
Tth111I GACNNNGTC 1 cut(s) 737
XapI RAATTY 2 cut(s) 412, 502
XceI RCATGY 6 cut(s) 357, 406, 628, 649, 876, 932
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 3 cut(s) 92, 150, 264
ZrmI AGTACT 1 cut(s) 381
Zsp2I ATGCAT 2 cut(s) 878, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.