Rh3DG287300

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
29639022 .. 29643611
4590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG287300.1

Sequence Viewer

Length: 1158 bp
ATGTGCAATGAAGTACAAATCATACTTAATTCTGCAGCAACCACTAAGTTTGATGAAAGGTATGATGTTGCGTTGGATGTGAATACATTTGGAGTTTTGAATATGTTGGACTTTGCAAAAAAATGCTTGAAATTGGAGATGGTTGTCCACGTGTCAACAGCTTATGTGTGTGGTGAAAGGGCAGGGCTGGTACTAGAGGACTCCTCTTCAATGGATGAGATGGCGAAAAAACCCAGTAAATTTGACTTGAAATCGCAGGAAAAGAAAATGGTGGAGAACAAGTTGATAGAACTACAAGCACAAAACGCTTCGGAAGAAGTTATAACAAGTGCAATGAAGGACTTAGGCACCGCAAGGTCTAAGTTGTACGGGTGGCCAAATACCTATGTGCTTACAAAGGTGATGGGAGAAATGTATCTAGGACATGCAAAAGGTAATCTATCTGTTGCTATTATACGTCCAACTATGATTACAAGTACATACAAGGAGCCATTTTCAGGCTGGATCGAAGGTTTCAGAACATATGATAGTGTAATTGGTGGTTACTGGAAAGGGAAGCTCACAGGCATACCTGTCGATCCTACGTCAGTAGTGGATATGATTCCAGTTGACATGGTGGTAAATTCAATAATTACAGCGATGGTCGTTAATGCAAACAAATCTGGCAAAATCATTTACCACCTGGGAACTTCATTGAGAAATCCCTTAACATTTTCTGATTTTAACAACTTTATGTTCCAATACTGCACCAAAAATCCATGGCTTAACAATGATGGAAGCCCAGTCAAGGTTGGAAAGTTGAAAATGTTGAGGAGTATGGACACTTTTCATTTGTACATGCAAATACCATTACAGGTATTAAAGTTCATGAACAAGGAATTTGACCAATATTTCCAAGACGTATACGTTAACTATAACAGGAAAGTCAAATCAGTGAAACGGTTGGTTGAGCTCTACAGAGCATATTTGCTATTCAAGGGCATCTTTGATGACACCAATGCAGAAGAGTTGCGAAGGATAGCAAGTGAGAACTATACAGATGCAGACAATTTTAATTTTGATCCAAAGTGCATAGATTGGGAAGACTACTATATGCATACTCACATTCCTGGCTTTGCAAAGCATGTTGTCATCAAACACAGCCAAAGTCGACTTTGA

Protein Analysis

385

Amino Acids

44.07

Weight (kDa)

8.08

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_4 PF07993 2 - 210 2.9e-46 Male sterility protein
Sterile PF03015 282 - 377 3.4e-14 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 347
AccI GTMKAC 2 cut(s) 903, 1150
AciI CCGC 1 cut(s) 351
AclWI GGATC 3 cut(s) 512, 572, 1055
AcoI YGGCCR 1 cut(s) 374
AcsI RAATTY 3 cut(s) 239, 622, 878
AcvI CACGTG 1 cut(s) 151
AfaI GTAC 5 cut(s) 15, 192, 368, 478, 836
AfiI CCNNNNNNNGG 2 cut(s) 497, 787
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 7 cut(s) 100, 130, 210, 250, 627, 802, 976
AjnI CCWGG 2 cut(s) 681, 1108
AluBI AGCT 3 cut(s) 161, 559, 952
AluI AGCT 3 cut(s) 161, 559, 952
Alw21I GWGCWC 1 cut(s) 954
AlwI GGATC 3 cut(s) 512, 572, 1055
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 3 cut(s) 239, 622, 878
AsuHPI GGTGA 2 cut(s) 185, 412
BalI TGGCCA 1 cut(s) 376
BanI GGYRCC 1 cut(s) 347
BanII GRGCYC 1 cut(s) 954
BbrPI CACGTG 1 cut(s) 151
BbsI GAAGAC 1 cut(s) 1089
Bbv12I GWGCWC 1 cut(s) 954
BbvI GCAGC 1 cut(s) 47
BccI CCATC 5 cut(s) 133, 214, 397, 634, 767
BcgI CGANNNNNNTGC 2 cut(s) 556, 590
BciT130I CCWGG 2 cut(s) 683, 1110
BfaI CTAG 2 cut(s) 194, 419
BfmI CTRYAG 2 cut(s) 33, 955
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme1390I CCNGG 2 cut(s) 683, 1110
BmiI GGNNCC 2 cut(s) 349, 489
BmrFI CCNGG 2 cut(s) 683, 1110
BmrI ACTGGG 2 cut(s) 228, 776
BmsI GCATC 2 cut(s) 990, 1030
BmuI ACTGGG 2 cut(s) 228, 776
BpiI GAAGAC 1 cut(s) 1089
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 682, 758
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 787
Bse1I ACTGG 4 cut(s) 234, 551, 605, 782
Bse3DI GCAATG 2 cut(s) 13, 339
BseBI CCWGG 2 cut(s) 683, 1110
BseDI CCNNGG 2 cut(s) 682, 758
BseGI GGATG 2 cut(s) 82, 220
BseLI CCNNNNNNNGG 2 cut(s) 497, 787
BseMI GCAATG 2 cut(s) 13, 339
BseNI ACTGG 4 cut(s) 234, 551, 605, 782
BseRI GAGGAG 2 cut(s) 193, 826
BseXI GCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 730
BshFI GGCC 1 cut(s) 376
BshNI GGYRCC 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 954
BslI CCNNNNNNNGG 2 cut(s) 497, 787
BsnI GGCC 1 cut(s) 376
Bsp1286I GDGCHC 1 cut(s) 954
Bsp1407I TGTACA 1 cut(s) 834
Bsp143I GATC 3 cut(s) 504, 577, 1060
Bsp19I CCATGG 1 cut(s) 758
BspACI CCGC 1 cut(s) 351
BspANI GGCC 1 cut(s) 376
BspHI TCATGA 1 cut(s) 867
BspLI GGNNCC 2 cut(s) 349, 489
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 3 cut(s) 512, 572, 1055
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 13, 339
BsrGI TGTACA 1 cut(s) 834
BsrI ACTGG 4 cut(s) 234, 551, 605, 782
BssECI CCNNGG 2 cut(s) 682, 758
BssMI GATC 3 cut(s) 504, 577, 1060
BssNAI GTATAC 1 cut(s) 904
BssT1I CCWWGG 1 cut(s) 758
Bst1107I GTATAC 1 cut(s) 904
Bst2UI CCWGG 2 cut(s) 683, 1110
Bst4CI ACNGT 1 cut(s) 942
Bst6I CTCTTC 2 cut(s) 211, 999
BstAUI TGTACA 1 cut(s) 834
BstBAI YACGTR 1 cut(s) 151
BstDEI CTNAG 3 cut(s) 45, 343, 360
BstDSI CCRYGG 1 cut(s) 758
BstF5I GGATG 2 cut(s) 82, 220
BstKTI GATC 3 cut(s) 507, 580, 1063
BstMBI GATC 3 cut(s) 504, 577, 1060
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 2 cut(s) 683, 1110
BstNSI RCATGY 3 cut(s) 428, 841, 1127
BstSCI CCNGG 2 cut(s) 681, 1108
BstSFI CTRYAG 2 cut(s) 33, 955
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 1089
BstZ17I GTATAC 1 cut(s) 904
BsuRI GGCC 1 cut(s) 376
BtgI CCRYGG 1 cut(s) 758
BtgZI GCGATG 1 cut(s) 653
BtsCI GGATG 2 cut(s) 82, 220
BtsIMutI CAGTG 1 cut(s) 939
CciI TCATGA 1 cut(s) 867
Csp6I GTAC 5 cut(s) 14, 191, 367, 477, 835
CspCI CAANNNNNGTGG 2 cut(s) 31, 66
CviAII CATG 6 cut(s) 425, 613, 759, 838, 868, 1124
CviQI GTAC 5 cut(s) 14, 191, 367, 477, 835
DdeI CTNAG 3 cut(s) 45, 343, 360
DpnI GATC 3 cut(s) 506, 579, 1062
DpnII GATC 3 cut(s) 504, 577, 1060
EaeI YGGCCR 1 cut(s) 374
Eam1104I CTCTTC 2 cut(s) 211, 999
EarI CTCTTC 2 cut(s) 211, 999
Ecl136II GAGCTC 1 cut(s) 952
Eco130I CCWWGG 1 cut(s) 758
Eco24I GRGCYC 1 cut(s) 954
Eco53kI GAGCTC 1 cut(s) 952
Eco72I CACGTG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 952
EcoRII CCWGG 2 cut(s) 681, 1108
EcoT14I CCWWGG 1 cut(s) 758
EcoT22I ATGCAT 1 cut(s) 1098
EcoT38I GRGCYC 1 cut(s) 954
ErhI CCWWGG 1 cut(s) 758
FaeI CATG 6 cut(s) 428, 616, 762, 841, 871, 1127
FalI AAGNNNNNCTT 2 cut(s) 968, 1000
FatI CATG 6 cut(s) 424, 612, 758, 837, 867, 1123
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 2 cut(s) 903, 1150
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 89, 227
FriOI GRGCYC 1 cut(s) 954
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 194, 419
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 376
Hin1II CATG 6 cut(s) 428, 616, 762, 841, 871, 1127
HincII GTYRAC 4 cut(s) 156, 610, 910, 1151
HindII GTYRAC 4 cut(s) 156, 610, 910, 1151
HinfI GANTC 2 cut(s) 200, 601
HpaI GTTAAC 1 cut(s) 910
HphI GGTGA 2 cut(s) 185, 412
Hpy166II GTNNAC 6 cut(s) 148, 156, 610, 904, 910, 1151
Hpy188I TCNGA 3 cut(s) 313, 518, 718
Hpy188III TCNNGA 1 cut(s) 868
Hpy8I GTNNAC 6 cut(s) 148, 156, 610, 904, 910, 1151
HpyAV CCTTC 3 cut(s) 331, 503, 1008
HpyCH4III ACNGT 1 cut(s) 942
HpyCH4IV ACGT 5 cut(s) 150, 457, 584, 900, 906
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 3 cut(s) 45, 343, 360
HpySE526I ACGT 5 cut(s) 150, 457, 584, 900, 906
Hsp92II CATG 6 cut(s) 428, 616, 762, 841, 871, 1127
KspAI GTTAAC 1 cut(s) 910
Kzo9I GATC 3 cut(s) 504, 577, 1060
LmnI GCTCC 1 cut(s) 487
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 2 cut(s) 990, 1030
MaeI CTAG 2 cut(s) 194, 419
MaeII ACGT 5 cut(s) 150, 457, 584, 900, 906
MaeIII GTNAC 1 cut(s) 542
MalI GATC 3 cut(s) 506, 579, 1062
MboI GATC 3 cut(s) 504, 577, 1060
MboII GAAGA 4 cut(s) 198, 326, 1016, 1094
MhlI GDGCHC 1 cut(s) 954
MlsI TGGCCA 1 cut(s) 376
MluCI AATT 9 cut(s) 28, 131, 239, 534, 622, 630, 878, 1048, 1054
MluNI TGGCCA 1 cut(s) 376
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 4 cut(s) 54, 87, 485, 772
MnlI CCTC 3 cut(s) 190, 214, 804
Mox20I TGGCCA 1 cut(s) 376
Mph1103I ATGCAT 1 cut(s) 1098
MscI TGGCCA 1 cut(s) 376
MseI TTAA 8 cut(s) 27, 648, 707, 723, 765, 860, 909, 1053
Msp20I TGGCCA 1 cut(s) 376
MspR9I CCNGG 2 cut(s) 683, 1110
MvaI CCWGG 2 cut(s) 683, 1110
MwoI GCNNNNNNNGC 1 cut(s) 305
NcoI CCATGG 1 cut(s) 758
NdeI CATATG 1 cut(s) 523
NdeII GATC 3 cut(s) 504, 577, 1060
NlaIII CATG 6 cut(s) 428, 616, 762, 841, 871, 1127
NlaIV GGNNCC 2 cut(s) 349, 489
NsiI ATGCAT 1 cut(s) 1098
NspI RCATGY 3 cut(s) 428, 841, 1127
PagI TCATGA 1 cut(s) 867
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 1 cut(s) 37
PleI GAGTC 1 cut(s) 194
PmaCI CACGTG 1 cut(s) 151
PmlI CACGTG 1 cut(s) 151
PpsI GAGTC 1 cut(s) 194
Ppu21I YACGTR 1 cut(s) 151
PsiI TTATAA 1 cut(s) 323
Psp124BI GAGCTC 1 cut(s) 954
Psp6I CCWGG 2 cut(s) 681, 1108
PspCI CACGTG 1 cut(s) 151
PspGI CCWGG 2 cut(s) 681, 1108
PspN4I GGNNCC 2 cut(s) 349, 489
PstI CTGCAG 1 cut(s) 37
RsaI GTAC 5 cut(s) 15, 192, 368, 478, 836
RsaNI GTAC 5 cut(s) 14, 191, 367, 477, 835
SacI GAGCTC 1 cut(s) 954
SalI GTCGAC 1 cut(s) 1149
SaqAI TTAA 8 cut(s) 27, 648, 707, 723, 765, 860, 909, 1053
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 3 cut(s) 504, 577, 1060
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 2 cut(s) 683, 1110
SduI GDGCHC 1 cut(s) 954
SfaNI GCATC 2 cut(s) 990, 1030
SfcI CTRYAG 2 cut(s) 33, 955
Sse9I AATT 9 cut(s) 28, 131, 239, 534, 622, 630, 878, 1048, 1054
SsiI CCGC 1 cut(s) 351
SspI AATATT 1 cut(s) 890
SspMI CTAG 2 cut(s) 194, 419
SstI GAGCTC 1 cut(s) 954
StyD4I CCNGG 2 cut(s) 681, 1108
StyI CCWWGG 1 cut(s) 758
TaaI ACNGT 1 cut(s) 942
TaiI ACGT 5 cut(s) 153, 460, 587, 903, 909
TaqI TCGA 3 cut(s) 507, 576, 1150
TasI AATT 9 cut(s) 28, 131, 239, 534, 622, 630, 878, 1048, 1054
TatI WGTACW 3 cut(s) 13, 476, 834
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 8 cut(s) 27, 648, 707, 723, 765, 860, 909, 1053
Tru9I TTAA 8 cut(s) 27, 648, 707, 723, 765, 860, 909, 1053
TscAI CASTG 1 cut(s) 939
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 7 cut(s) 24, 69, 350, 681, 818, 856, 884
TspRI CASTG 1 cut(s) 939
XapI RAATTY 3 cut(s) 239, 622, 878
XceI RCATGY 3 cut(s) 428, 841, 1127
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XmiI GTMKAC 2 cut(s) 903, 1150
XspI CTAG 2 cut(s) 194, 419
Zsp2I ATGCAT 1 cut(s) 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.