Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

54300070 .. 54301020

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0395800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAACTACGAGCTTGCAGCGGTGAAGCTGCTCTGCTCCCATCTCAAGCACGCAGTCGAATCCCCTTCCGAGAACGCCATGGACCTCCACGGCATCCTCTTCCAACGCGCCTGGTTACAGGGCATTTTGGTCTGGGCCTCCCCTGACGGCGACCGCTTGCTTCTCGACGACGGCACCGGAGTCATCGAACTCTGCCTCACTCCCGAGTTCCGCCGCCGCCCTTGGAGAATCGGAATGTATGTAATGGCTGTTGGACGCTACACTGTCCGTACAGATGAGCCCCCAATGATCCAGATTCACAAGATGGTTGATCTTTCGGCTTCCCCTGATCGTGAGGCAATGTGGTACCTTGAAGTTTTGGAGGCTTATAAATTCTTCTATCAGCGCATGATTGACGACCCTATGCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

137

Amino Acids

15.96

Weight (kDa)

5.29

Isoelectric Point (pI)

49.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RMI2	PF16100	6 - 123	1.2e-32	RecQ-mediated genome instability protein 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
Acc65I	GGTACC	1 cut(s)	345
AccB1I	GGYRCC	2 cut(s)	173, 345
AccII	CGCG	1 cut(s)	108
AciI	CCGC	5 cut(s)	20, 154, 211, 214, 217
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	1 cut(s)	371
AfaI	GTAC	2 cut(s)	271, 347
AgsI	TTSAA	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	110
AluBI	AGCT	2 cut(s)	13, 28
AluI	AGCT	2 cut(s)	13, 28
AlwI	GGATC	1 cut(s)	283
Ama87I	CYCGRG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	17, 28
ApoI	RAATTY	1 cut(s)	371
Asp718I	GGTACC	1 cut(s)	345
AspLEI	GCGC	2 cut(s)	110, 387
AspS9I	GGNCC	2 cut(s)	82, 135
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	2 cut(s)	173, 345
BanII	GRGCYC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	15, 29
BccI	CCATC	2 cut(s)	48, 298
BceAI	ACGGC	3 cut(s)	106, 163, 187
BciT130I	CCWGG	1 cut(s)	112
BisI	GCNGC	4 cut(s)	18, 29, 214, 217
BlsI	GCNGC	4 cut(s)	19, 30, 215, 218
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	82, 135
BmiI	GGNNCC	2 cut(s)	175, 347
BmrFI	CCNGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	78, 88, 221
BsaWI	WCCGGW	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	78, 88, 221
BseGI	GGATG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	345
BseXI	GCAGC	2 cut(s)	15, 29
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	2 cut(s)	173, 345
BsiEI	CGRYCG	1 cut(s)	154
BsiHKCI	CYCGRG	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	177
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	288, 310, 328
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	5 cut(s)	20, 154, 211, 214, 217
BspANI	GGCC	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	175, 347
BspPI	GGATC	1 cut(s)	283
BspT107I	GGYRCC	2 cut(s)	173, 345
BsrDI	GCAATG	1 cut(s)	345
BssECI	CCNNGG	3 cut(s)	78, 88, 221
BssMI	GATC	3 cut(s)	288, 310, 328
BssT1I	CCWWGG	2 cut(s)	78, 221
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	15, 51, 158
BstDSI	CCRYGG	2 cut(s)	78, 88
BstF5I	GGATG	1 cut(s)	93
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	110, 387
BstKTI	GATC	3 cut(s)	291, 313, 331
BstMBI	GATC	3 cut(s)	288, 310, 328
BstMCI	CGRYCG	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	15, 29
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	2 cut(s)	78, 88
BtsCI	GGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	3 cut(s)	15, 51, 158
CfoI	GCGC	2 cut(s)	110, 387
Cfr13I	GGNCC	2 cut(s)	82, 135
CseI	GACGC	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	270, 346
CviAII	CATG	3 cut(s)	79, 388, 407
CviJI	RGCY	7 cut(s)	13, 28, 137, 248, 280, 320, 365
CviKI_1	RGCY	7 cut(s)	13, 28, 137, 248, 280, 320, 365
CviQI	GTAC	2 cut(s)	270, 346
DpnI	GATC	3 cut(s)	290, 312, 330
DpnII	GATC	3 cut(s)	288, 310, 328
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	78, 221
Eco24I	GRGCYC	1 cut(s)	282
Eco47I	GGWCC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	2 cut(s)	78, 221
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	2 cut(s)	78, 221
FaeI	CATG	3 cut(s)	82, 391, 410
FaiI	YATR	6 cut(s)	80, 240, 369, 389, 404, 408
FatI	CATG	3 cut(s)	78, 387, 406
Fnu4HI	GCNGC	4 cut(s)	18, 29, 214, 217
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	4 cut(s)	18, 29, 214, 217
GlaI	GCGC	2 cut(s)	109, 386
GluI	GCNGC	4 cut(s)	18, 29, 214, 217
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	177
HgaI	GACGC	1 cut(s)	264
HhaI	GCGC	2 cut(s)	110, 387
Hin1II	CATG	3 cut(s)	82, 391, 410
Hin6I	GCGC	2 cut(s)	108, 385
HinP1I	GCGC	2 cut(s)	108, 385
HinfI	GANTC	4 cut(s)	59, 180, 228, 295
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	70, 233
Hpy188III	TCNNGA	4 cut(s)	164, 203, 292, 332
Hpy99I	CGWCG	2 cut(s)	170, 173
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	17, 406
Hsp92II	CATG	3 cut(s)	82, 391, 410
HspAI	GCGC	2 cut(s)	108, 385
KpnI	GGTACC	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	288, 310, 328
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	8 cut(s)	97, 104, 118, 124, 156, 190, 305, 339
Lsp1109I	GCAGC	2 cut(s)	15, 29
LweI	GCATC	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	114
MalI	GATC	3 cut(s)	290, 312, 330
MboI	GATC	3 cut(s)	288, 310, 328
MboII	GAAGA	2 cut(s)	91, 367
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	1 cut(s)	371
MlyI	GAGTC	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	127, 232
MnlI	CCTC	6 cut(s)	95, 107, 148, 206, 328, 355
Mph1103I	ATGCAT	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	112
MvaI	CCWGG	1 cut(s)	112
MvnI	CGCG	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	3 cut(s)	288, 310, 328
NlaIII	CATG	3 cut(s)	82, 391, 410
NlaIV	GGNNCC	2 cut(s)	175, 347
NsiI	ATGCAT	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	59, 228, 295
PkrI	GCNGC	4 cut(s)	19, 30, 215, 218
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PsiI	TTATAA	1 cut(s)	369
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	2 cut(s)	175, 347
PspPI	GGNCC	2 cut(s)	82, 135
RsaI	GTAC	2 cut(s)	271, 347
RsaNI	GTAC	2 cut(s)	270, 346
SatI	GCNGC	4 cut(s)	18, 29, 214, 217
Sau3AI	GATC	3 cut(s)	288, 310, 328
Sau96I	GGNCC	2 cut(s)	82, 135
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	1 cut(s)	112
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	4 cut(s)	15, 30, 87, 351
SfaNI	GCATC	1 cut(s)	102
SinI	GGWCC	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	5 cut(s)	20, 154, 211, 214, 217
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	2 cut(s)	78, 221
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	3 cut(s)	57, 165, 186
TasI	AATT	1 cut(s)	371
TauI	GCSGC	2 cut(s)	216, 219
TfiI	GAWTC	3 cut(s)	59, 228, 295
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	2 cut(s)	17, 28
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.