Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022203.1

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2122

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022203.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 637 bp

atcctatgatagcctaattggtagttattggaaagggaagctcacatgtgtacctgtcgatcctatgtcagtaacagatatgattccggttgacatggtggtaaattcaattattacagcaatggtagtcaatgcaaataaatctcgtgaaattatttaccatgttggaacctcattacgaaatccccttaaattctctgattttcacaaatttatgttccgatactgcacaaaaaatccatggctttacaatgatggaaggcttatcaaggttggcaagttaaaaatggtgaggaccatgaccgcttttcgcttgtacatgcaaccattgcagggattaaaatttttgaataaagaatttgaccaatatttccaagatgtatgcattaactatgaccggaatgtcaaatcggtgatacggatgattgagtactatataccacttttgctattccaggggatctttgacgacaccaattctgaagaattgcgaaggacagcaagcgagaactacattgatgcagaaaattttaatttcaacccaaaatgcattgactgggaagactattatatccatgctcacattcctggccttgcaaagcatgttattttcaagcacaaccaaagccggctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

211

Amino Acids

24.91

Weight (kDa)

8.77

Isoelectric Point (pI)

38.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	402
AciI	CCGC	1 cut(s)	304
AclWI	GGATC	2 cut(s)	54, 468
AcsI	RAATTY	6 cut(s)	104, 192, 210, 342, 357, 527
AcuI	CTGAAG	1 cut(s)	502
AfaI	GTAC	3 cut(s)	52, 318, 432
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	109, 350, 539, 614
AjnI	CCWGG	2 cut(s)	454, 587
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
AlwI	GGATC	2 cut(s)	54, 468
AoxI	GGCC	1 cut(s)	590
ApoI	RAATTY	6 cut(s)	104, 192, 210, 342, 357, 527
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	302, 425
AvaII	GGWCC	1 cut(s)	295
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BauI	CACGAG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	568
BccI	CCATC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	456, 589
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	2 cut(s)	456, 589
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	456, 589
BmrI	ACTGGG	1 cut(s)	566
BmsI	GCATC	1 cut(s)	509
BmuI	ACTGGG	1 cut(s)	566
BpiI	GAAGAC	1 cut(s)	568
BsaJI	CCNNGG	2 cut(s)	240, 455
BsaWI	WCCGGW	2 cut(s)	86, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse118I	RCCGGY	1 cut(s)	628
Bse1I	ACTGG	1 cut(s)	561
Bse3DI	GCAATG	2 cut(s)	127, 327
BseBI	CCWGG	2 cut(s)	456, 589
BseDI	CCNNGG	2 cut(s)	240, 455
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	2 cut(s)	127, 327
BseNI	ACTGG	1 cut(s)	561
BsgI	GTGCAG	1 cut(s)	212
BshFI	GGCC	1 cut(s)	592
BsiSI	CCGG	3 cut(s)	87, 398, 629
BslI	CCNNNNNNNGG	1 cut(s)	333
BsnI	GGCC	1 cut(s)	592
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	2 cut(s)	59, 460
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	1 cut(s)	304
BspANI	GGCC	1 cut(s)	592
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	2 cut(s)	54, 468
BsrDI	GCAATG	2 cut(s)	127, 327
BsrFI	RCCGGY	1 cut(s)	628
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	240, 455
BssMI	GATC	2 cut(s)	59, 460
BssSI	CACGAG	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	240
Bst2BI	CACGAG	1 cut(s)	145
Bst2UI	CCWGG	2 cut(s)	456, 589
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstAUI	TGTACA	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	503, 630
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	2 cut(s)	62, 463
BstMBI	GATC	2 cut(s)	59, 460
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	2 cut(s)	456, 589
BstNSI	RCATGY	3 cut(s)	49, 323, 606
BstSCI	CCNGG	2 cut(s)	454, 587
BstV2I	GAAGAC	1 cut(s)	568
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	592
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	503, 630
Cfr10I	RCCGGY	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	51, 317, 431
CviAII	CATG	8 cut(s)	46, 95, 162, 241, 299, 320, 576, 603
CviJI	RGCY	7 cut(s)	13, 41, 245, 263, 592, 628, 632
CviKI_1	RGCY	7 cut(s)	13, 41, 245, 263, 592, 628, 632
CviQI	GTAC	3 cut(s)	51, 317, 431
DpnI	GATC	2 cut(s)	61, 462
DpnII	GATC	2 cut(s)	59, 460
DrdI	GACNNNNNNGTC	1 cut(s)	402
DseDI	GACNNNNNNGTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	502
EcoRII	CCWGG	2 cut(s)	454, 587
EcoT14I	CCWWGG	1 cut(s)	240
EcoT22I	ATGCAT	2 cut(s)	387, 552
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	8 cut(s)	49, 98, 165, 244, 302, 323, 579, 606
FatI	CATG	8 cut(s)	45, 94, 161, 240, 298, 319, 575, 602
FokI	GGATG	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	592
HapII	CCGG	3 cut(s)	87, 398, 629
Hin1II	CATG	8 cut(s)	49, 98, 165, 244, 302, 323, 579, 606
HincII	GTYRAC	1 cut(s)	92
HindII	GTYRAC	1 cut(s)	92
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	3 cut(s)	87, 398, 629
HphI	GGTGA	2 cut(s)	302, 425
Hpy166II	GTNNAC	2 cut(s)	51, 92
Hpy188I	TCNGA	3 cut(s)	200, 222, 482
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	2 cut(s)	51, 92
HpyAV	CCTTC	2 cut(s)	253, 487
HpyCH4V	TGCA	8 cut(s)	135, 229, 323, 332, 385, 522, 550, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
Hsp92II	CATG	8 cut(s)	49, 98, 165, 244, 302, 323, 579, 606
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	59, 460
LpnPI	CCDG	9 cut(s)	67, 100, 318, 411, 441, 468, 542, 574, 601
LweI	GCATC	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	2 cut(s)	61, 462
MboI	GATC	2 cut(s)	59, 460
MboII	GAAGA	2 cut(s)	495, 573
MflI	RGATCY	1 cut(s)	460
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	2 cut(s)	182, 286
Mph1103I	ATGCAT	2 cut(s)	387, 552
MroNI	GCCGGC	1 cut(s)	628
MseI	TTAA	5 cut(s)	190, 282, 339, 388, 532
MspI	CCGG	3 cut(s)	87, 398, 629
MspR9I	CCNGG	2 cut(s)	456, 589
MvaI	CCWGG	2 cut(s)	456, 589
MwoI	GCNNNNNNNGC	1 cut(s)	329
NaeI	GCCGGC	1 cut(s)	630
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	59, 460
NgoMIV	GCCGGC	1 cut(s)	628
NlaIII	CATG	8 cut(s)	49, 98, 165, 244, 302, 323, 579, 606
NlaIV	GGNNCC	1 cut(s)	170
NsiI	ATGCAT	2 cut(s)	387, 552
NspI	RCATGY	3 cut(s)	49, 323, 606
PciI	ACATGT	1 cut(s)	45
PdiI	GCCGGC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	83
PscI	ACATGT	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	454, 587
PspGI	CCWGG	2 cut(s)	454, 587
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	3 cut(s)	52, 318, 432
RsaNI	GTAC	3 cut(s)	51, 317, 431
SaqAI	TTAA	5 cut(s)	190, 282, 339, 388, 532
Sau3AI	GATC	2 cut(s)	59, 460
Sau96I	GGNCC	1 cut(s)	295
ScaI	AGTACT	1 cut(s)	432
ScrFI	CCNGG	2 cut(s)	456, 589
SetI	ASST	4 cut(s)	43, 56, 174, 274
SfaNI	GCATC	1 cut(s)	509
SinI	GGWCC	1 cut(s)	295
SsiI	CCGC	1 cut(s)	304
SspI	AATATT	1 cut(s)	369
StyD4I	CCNGG	2 cut(s)	454, 587
StyI	CCWWGG	1 cut(s)	240
TaqI	TCGA	1 cut(s)	58
TatI	WGTACW	2 cut(s)	316, 430
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	5 cut(s)	190, 282, 339, 388, 532
Tru9I	TTAA	5 cut(s)	190, 282, 339, 388, 532
TspGWI	ACGGA	1 cut(s)	434
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	6 cut(s)	104, 192, 210, 342, 357, 527
XceI	RCATGY	3 cut(s)	49, 323, 606
ZrmI	AGTACT	1 cut(s)	432
Zsp2I	ATGCAT	2 cut(s)	387, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.