Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Reverse (-)

9112309 .. 9113112

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1066600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTGGTAAATTCAATAATTTCAGCGATAGTGGTGAATGCAAATCAATCTTCTATTCTCATTTACCATGTGGGATCTTCATTTCGCAACCCTGTAAAATTTTGTGATATTCACGATATTGGCTTTCGATACTTCACCAAATTTCCCTGGGTGACGAAGGACGGAAAGCCTATTAAGGTTGCGAAGTTTAGAATGCTTAGGACTATGGCTTCTTTCCGCATGTACATGCAAATTCGCTTCATGATACCTCTGCAGGGATTAAAGTTCGTAAATAAGGCATCATGCCGATATTTCAAGGATATATATGCTAATTACAGTCGAAAACTCAAATTGGTAATGCGCATGGTAGAGCTGTACAAACCCTATCTGTTATTCAAGGGCATATTTGATGACACCAATTCGGAGGAGCTGCGAAGGGTGACAAATGAGAGTTACATAGACGCAAAAGAATTTAATTTTGATCCCAGGTGCATTGATTGGGAAGACTACATTATGAAAACTCACATTCCTGGCCTCGAAAAGCATGTTATCGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

180

Amino Acids

21.28

Weight (kDa)

9.66

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sterile	PF03015	81 - 177	3.3e-17	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	341
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	82, 455
AcsI	RAATTY	5 cut(s)	10, 98, 140, 231, 449
AfaI	GTAC	2 cut(s)	224, 356
AfiI	CCNNNNNNNGG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	15, 295, 376
AjnI	CCWGG	3 cut(s)	146, 464, 508
AluBI	AGCT	2 cut(s)	352, 409
AluI	AGCT	2 cut(s)	352, 409
AlwI	GGATC	2 cut(s)	82, 455
AoxI	GGCC	1 cut(s)	511
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	5 cut(s)	10, 98, 140, 231, 449
AspLEI	GCGC	1 cut(s)	342
AsuHPI	GGTGA	4 cut(s)	46, 127, 163, 430
BbsI	GAAGAC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	396
BciT130I	CCWGG	3 cut(s)	148, 466, 510
BfmI	CTRYAG	1 cut(s)	251
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	3 cut(s)	148, 466, 510
BmrFI	CCNGG	3 cut(s)	148, 466, 510
BmsI	GCATC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	146, 147, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
BseBI	CCWGG	3 cut(s)	148, 466, 510
BseDI	CCNNGG	3 cut(s)	146, 147, 464
BseLI	CCNNNNNNNGG	1 cut(s)	254
BseRI	GAGGAG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	396
BshFI	GGCC	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmI	GAATGC	2 cut(s)	43, 198
BsnI	GGCC	1 cut(s)	513
Bsp1407I	TGTACA	2 cut(s)	222, 354
Bsp143I	GATC	2 cut(s)	74, 460
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	513
BspHI	TCATGA	1 cut(s)	240
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	2 cut(s)	82, 455
BsrGI	TGTACA	2 cut(s)	222, 354
BssECI	CCNNGG	3 cut(s)	146, 147, 464
BssMI	GATC	2 cut(s)	74, 460
Bst2UI	CCWGG	3 cut(s)	148, 466, 510
Bst4CI	ACNGT	1 cut(s)	317
BstAUI	TGTACA	2 cut(s)	222, 354
BstDEI	CTNAG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	2 cut(s)	77, 463
BstMBI	GATC	2 cut(s)	74, 460
BstNI	CCWGG	3 cut(s)	148, 466, 510
BstNSI	RCATGY	3 cut(s)	223, 229, 527
BstSCI	CCNGG	3 cut(s)	146, 464, 508
BstSFI	CTRYAG	1 cut(s)	251
BstV1I	GCAGC	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	513
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	342
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	2 cut(s)	223, 355
CviAII	CATG	7 cut(s)	68, 220, 226, 241, 282, 343, 524
CviJI	RGCY	6 cut(s)	123, 169, 209, 352, 409, 513
CviKI_1	RGCY	6 cut(s)	123, 169, 209, 352, 409, 513
CviQI	GTAC	2 cut(s)	223, 355
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	2 cut(s)	76, 462
DpnII	GATC	2 cut(s)	74, 460
EcoRII	CCWGG	3 cut(s)	146, 464, 508
FaeI	CATG	7 cut(s)	71, 223, 229, 244, 285, 346, 527
FatI	CATG	7 cut(s)	67, 219, 225, 240, 281, 342, 523
Fnu4HI	GCNGC	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	410
FspAI	RTGCGCAY	1 cut(s)	341
FspI	TGCGCA	1 cut(s)	341
GlaI	GCGC	1 cut(s)	341
GluI	GCNGC	1 cut(s)	410
HaeIII	GGCC	1 cut(s)	513
HgaI	GACGC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	7 cut(s)	71, 223, 229, 244, 285, 346, 527
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HphI	GGTGA	4 cut(s)	46, 127, 163, 430
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	2 cut(s)	113, 241
HpyAV	CCTTC	2 cut(s)	151, 408
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	4 cut(s)	41, 229, 253, 471
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	7 cut(s)	71, 223, 229, 244, 285, 346, 527
HspAI	GCGC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	74, 460
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	8 cut(s)	105, 133, 160, 239, 451, 478, 495, 522
Lsp1109I	GCAGC	1 cut(s)	396
LweI	GCATC	1 cut(s)	287
MaeIII	GTNAC	3 cut(s)	151, 418, 431
MalI	GATC	2 cut(s)	76, 462
MboI	GATC	2 cut(s)	74, 460
MboII	GAAGA	3 cut(s)	42, 69, 494
MflI	RGATCY	1 cut(s)	74
MnlI	CCTC	3 cut(s)	258, 397, 524
MseI	TTAA	3 cut(s)	174, 260, 453
MslI	CAYNNNNRTG	1 cut(s)	224
MspR9I	CCNGG	3 cut(s)	148, 466, 510
Mva1269I	GAATGC	2 cut(s)	43, 198
MvaI	CCWGG	3 cut(s)	148, 466, 510
NdeII	GATC	2 cut(s)	74, 460
NlaIII	CATG	7 cut(s)	71, 223, 229, 244, 285, 346, 527
NmuCI	GTSAC	2 cut(s)	151, 418
NsbI	TGCGCA	1 cut(s)	341
NspI	RCATGY	3 cut(s)	223, 229, 527
PagI	TCATGA	1 cut(s)	240
PasI	CCCWGGG	1 cut(s)	147
PctI	GAATGC	2 cut(s)	43, 198
PkrI	GCNGC	1 cut(s)	411
Psp6I	CCWGG	3 cut(s)	146, 464, 508
PspGI	CCWGG	3 cut(s)	146, 464, 508
PstI	CTGCAG	1 cut(s)	255
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	2 cut(s)	224, 356
RsaNI	GTAC	2 cut(s)	223, 355
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	174, 260, 453
SatI	GCNGC	1 cut(s)	410
Sau3AI	GATC	2 cut(s)	74, 460
ScrFI	CCNGG	3 cut(s)	148, 466, 510
SetI	ASST	5 cut(s)	180, 250, 354, 411, 470
SfaNI	GCATC	1 cut(s)	287
SfcI	CTRYAG	1 cut(s)	251
SmiMI	CAYNNNNRTG	1 cut(s)	224
SsiI	CCGC	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	146, 464, 508
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	127, 319, 516
TatI	WGTACW	2 cut(s)	222, 354
Tru1I	TTAA	3 cut(s)	174, 260, 453
Tru9I	TTAA	3 cut(s)	174, 260, 453
TseFI	GTSAC	2 cut(s)	151, 418
TseI	GCWGC	1 cut(s)	409
Tsp45I	GTSAC	2 cut(s)	151, 418
TspDTI	ATGAA	3 cut(s)	69, 229, 509
TspGWI	ACGGA	1 cut(s)	177
XapI	RAATTY	5 cut(s)	10, 98, 140, 231, 449
XceI	RCATGY	3 cut(s)	223, 229, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.