Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008623.1

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

65284 .. 66032

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008623.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atggatcagtcggagagcatactgggatacctacataataagaccattttgatcactggagccactggcttccttggaatggtacttgtagagaaaattctgagggttcaaccaaacgtcaagaggctttatcttcttttaagagctcctgatgccaagtccgccacatatcgaatgaataatgagatcctagggaaggaattgttcaaggttctgagagaaacacgcggtgaagattttgactcctttgtatctcaaaaagtcattgctctaccgggagacataggttttgaaaacctggggatgaaggatgtcgtattgatggaaaatatgtgcaatgagatacaaatcatagtgaattcagcagcaaataccaaatttgatgagaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

130

Amino Acids

14.67

Weight (kDa)

5.85

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	228
AciI	CCGC	2 cut(s)	162, 228
AclWI	GGATC	2 cut(s)	12, 181
AcsI	RAATTY	3 cut(s)	96, 358, 377
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	79, 196
AgsI	TTSAA	3 cut(s)	110, 208, 293
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	12, 181
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	3 cut(s)	96, 358, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	272, 304
AspA2I	CCTAGG	1 cut(s)	190
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	242
AvrII	CCTAGG	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	299
BciVI	GTATCC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	191
BfuI	GTATCC	1 cut(s)	20
BisI	GCNGC	1 cut(s)	366
BlnI	CCTAGG	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	276, 299
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	276, 299
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	142
BmuI	ACTGGG	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	73, 190, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	79, 196
Bse1I	ACTGG	3 cut(s)	27, 61, 70
Bse3DI	GCAATG	2 cut(s)	264, 343
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	3 cut(s)	73, 190, 298
BseGI	GGATG	2 cut(s)	309, 316
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	79, 196
BseMI	GCAATG	2 cut(s)	264, 343
BseMII	CTCAG	2 cut(s)	92, 206
BseNI	ACTGG	3 cut(s)	27, 61, 70
BseXI	GCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	79, 196
BsmAI	GTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	3 cut(s)	4, 51, 186
BspACI	CCGC	2 cut(s)	162, 228
BspCNI	CTCAG	2 cut(s)	93, 207
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	12, 181
BsrDI	GCAATG	2 cut(s)	264, 343
BsrI	ACTGG	3 cut(s)	27, 61, 70
BssECI	CCNNGG	3 cut(s)	73, 190, 298
BssMI	GATC	3 cut(s)	4, 51, 186
BssT1I	CCWWGG	2 cut(s)	73, 190
Bst2UI	CCWGG	1 cut(s)	299
BstDEI	CTNAG	2 cut(s)	101, 215
BstENI	CCTNNNNNAGG	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	309, 316
BstFNI	CGCG	1 cut(s)	228
BstKTI	GATC	3 cut(s)	7, 54, 189
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	3 cut(s)	4, 51, 186
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 161
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	274, 297
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	309, 316
BtsIMutI	CAGTG	2 cut(s)	54, 63
Csp6I	GTAC	1 cut(s)	83
CviJI	RGCY	4 cut(s)	62, 69, 127, 146
CviKI_1	RGCY	4 cut(s)	62, 69, 127, 146
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	101, 215
DpnI	GATC	3 cut(s)	6, 53, 188
DpnII	GATC	3 cut(s)	4, 51, 186
DraIII	CACNNNGTG	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	73, 190
Eco24I	GRGCYC	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	146
EcoNI	CCTNNNNNAGG	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	2 cut(s)	73, 190
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	2 cut(s)	73, 190
FaiI	YATR	6 cut(s)	20, 36, 169, 284, 332, 353
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	2 cut(s)	316, 323
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	366
FspBI	CTAG	1 cut(s)	191
GluI	GCNGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	78
HapII	CCGG	1 cut(s)	275
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	242
Hpy188I	TCNGA	3 cut(s)	13, 102, 216
Hpy188III	TCNNGA	2 cut(s)	121, 149
HpyAV	CCTTC	2 cut(s)	190, 301
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 161
HpyF3I	CTNAG	2 cut(s)	101, 215
HpySE526I	ACGT	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	3 cut(s)	4, 51, 186
LmnI	GCTCC	2 cut(s)	59, 151
LpnPI	CCDG	7 cut(s)	8, 42, 51, 162, 284, 288, 311
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	117
MalI	GATC	3 cut(s)	6, 53, 188
MboI	GATC	3 cut(s)	4, 51, 186
MboII	GAAGA	2 cut(s)	125, 245
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	148
MluCI	AATT	4 cut(s)	96, 200, 358, 377
MlyI	GAGTC	1 cut(s)	236
MnlI	CCTC	3 cut(s)	96, 117, 381
MseI	TTAA	1 cut(s)	140
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	2 cut(s)	276, 299
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	152, 161
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	3 cut(s)	4, 51, 186
NlaIV	GGNNCC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	367
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
Psp124BI	GAGCTC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	3 cut(s)	4, 51, 186
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	276, 299
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	7 cut(s)	33, 120, 148, 213, 289, 300, 392
SfaNI	GCATC	1 cut(s)	142
Sse9I	AATT	4 cut(s)	96, 200, 358, 377
SsiI	CCGC	2 cut(s)	162, 228
SspMI	CTAG	1 cut(s)	191
SstI	GAGCTC	1 cut(s)	148
StyD4I	CCNGG	2 cut(s)	274, 297
StyI	CCWWGG	2 cut(s)	73, 190
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	172
TasI	AATT	4 cut(s)	96, 200, 358, 377
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TscAI	CASTG	2 cut(s)	61, 70
TseI	GCWGC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	191, 320
TspRI	CASTG	2 cut(s)	61, 70
XagI	CCTNNNNNAGG	1 cut(s)	194
XapI	RAATTY	3 cut(s)	96, 358, 377
XmaJI	CCTAGG	1 cut(s)	190
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.