Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

19861333 .. 19866869

Gene Structure 5537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAATTGGAGAGCATTCTGGGATACCTGAAGAACAAGACTATCTTAATCACTGGAGCTACCGGCTTTGTGGGAAAGGTCTTGGTAGAGAAAATATTAAGAGTTCAACCAGACGTGAAAAGGCTCTATCTTCTTTTAAGAGCATCCGATGCCAACTCTGCCACACAACGCATGCATAATGAGATTACAGGGAAAGAGTTGTTCAGGGTTCTGAGGGAGAAATTAGGTGCAGATTTTGATTCCTTCATATTAGAAAAAGTTGTTGCTCTGTCGGGAGACGTAATTTTTGAAGATCTAGGAGTGAAGCCAGTCAAACTAAAGGAAGAGATGTGCAATGAAGGACCGCCAACTTTGATTTGCAACTATCTCCAAACCTCCGCTTTGCAGCAGGTTCGAAATTTTAGGAGGAGATTTTTGTGGAGTAACTCACGGAGGGTCGGTTGGGGAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

150

Amino Acids

17.1

Weight (kDa)

9.51

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	17 - 108	1.8e-21	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AciI	CCGC	2 cut(s)	344, 378
AcsI	RAATTY	1 cut(s)	397
AcuI	CTGAAG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	107, 290
AjiI	CACGTC	1 cut(s)	115
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	397
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
AspS9I	GGNCC	1 cut(s)	341
AsuII	TTCGAA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	341
BbvI	GCAGC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciVI	GTATCC	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	17
BglII	AGATCT	1 cut(s)	292
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	341
BmgBI	CACGTC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	341
BmsI	GCATC	2 cut(s)	139, 152
BpmI	CTGGAG	1 cut(s)	75
Bpu14I	TTCGAA	1 cut(s)	394
BsaXI	ACNNNNNCTCC	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	2 cut(s)	58, 308
Bse3DI	GCAATG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	58, 308
BseRI	GAGGAG	1 cut(s)	421
BseXI	GCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	270
BsmBI	CGTCTC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	15
Bsp119I	TTCGAA	1 cut(s)	394
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	2 cut(s)	344, 378
BspCNI	CTCAG	1 cut(s)	204
BspMI	ACCTGC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	340
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	58, 308
BssAI	RCCGGY	1 cut(s)	62
BssMI	GATC	1 cut(s)	292
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBI	TTCGAA	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstNSI	RCATGY	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuI	GTATCC	1 cut(s)	17
BtrI	CACGTC	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	51
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	173
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	341
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	4 cut(s)	59, 66, 124, 307
CviKI_1	RGCY	4 cut(s)	59, 66, 124, 307
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	175
FaiI	YATR	3 cut(s)	173, 177, 248
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	75
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	1 cut(s)	239
HpaII	CCGG	1 cut(s)	63
Hpy188I	TCNGA	2 cut(s)	148, 213
Hpy188III	TCNNGA	1 cut(s)	273
HpyAV	CCTTC	2 cut(s)	253, 332
HpyCH4IV	ACGT	2 cut(s)	114, 279
HpyCH4V	TGCA	5 cut(s)	175, 230, 333, 360, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	1 cut(s)	212
HpySE526I	ACGT	2 cut(s)	114, 279
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	9 cut(s)	5, 39, 41, 76, 123, 174, 190, 321, 374
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	139, 152
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	2 cut(s)	114, 279
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	4 cut(s)	43, 122, 302, 335
MflI	RGATCY	1 cut(s)	292
MluCI	AATT	4 cut(s)	5, 221, 282, 397
MnlI	CCTC	4 cut(s)	207, 385, 399, 426
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	3 cut(s)	47, 98, 137
MspI	CCGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	1 cut(s)	175
NspV	TTCGAA	1 cut(s)	394
PaeI	GCATGC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	47, 98, 137
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	341
SetI	ASST	8 cut(s)	30, 61, 81, 117, 229, 282, 377, 393
SfaNI	GCATC	2 cut(s)	139, 152
SfuI	TTCGAA	1 cut(s)	394
SinI	GGWCC	1 cut(s)	341
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	4 cut(s)	5, 221, 282, 397
SsiI	CCGC	2 cut(s)	344, 378
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	1 cut(s)	296
TaiI	ACGT	2 cut(s)	117, 282
TaqI	TCGA	1 cut(s)	394
TasI	AATT	4 cut(s)	5, 221, 282, 397
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	47, 98, 137
Tru9I	TTAA	3 cut(s)	47, 98, 137
TscAI	CASTG	1 cut(s)	58
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	235, 351
TspGWI	ACGGA	1 cut(s)	445
TspRI	CASTG	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.