Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

38471656 .. 38473167

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034211

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGATATATATTAAGATCATAGGGAAGGAGTTGTTCAGAGTTTTGAGGGAGAAATGCGGGGCAGATTTTGAATCCTTCATTAGAGAAAAAGTTGCTGCTTTGTCGGGAGACGTCACTTCTGGAAACCTTAGAATCAAAGAATTGAAACAGTGGGAGCAGATGTGCAGTGAAATAGAAATCATATTAAATTGTGCAGCCACCACAAACTTTGACGAAAGATCTTTGATTGCATTTTCTGATGGGATCTCAGAGAAAGACGAGATCGATTTCTCTGAGATTTTATTTTGGATTCAAATCCACCATGTGCCTTTGGGGATGATTTCTGTTGGTACAGCTCGAAGTATCGGCCGGAAAGATCCGGCTTTGAGCGGTGTATTAGCTGCTCATATGATCTTGGTGCTGGCTTTTGATCTCAGGTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

142

Amino Acids

15.82

Weight (kDa)

5.38

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	17 - 74	1.6e-07	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccBSI	CCGCTC	1 cut(s)	369
AciI	CCGC	2 cut(s)	57, 369
AclWI	GGATC	2 cut(s)	251, 350
AcoI	YGGCCR	1 cut(s)	346
AcyI	GRCGYC	1 cut(s)	111
AdeI	CACNNNGTG	1 cut(s)	304
AfaI	GTAC	1 cut(s)	331
AgsI	TTSAA	3 cut(s)	71, 145, 293
AluBI	AGCT	2 cut(s)	335, 380
AluI	AGCT	2 cut(s)	335, 380
Alw26I	GTCTC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	251, 350
AoxI	GGCC	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	95, 194, 380
BbvI	GCAGC	3 cut(s)	82, 206, 367
BccI	CCATC	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	3 cut(s)	96, 195, 381
BlsI	GCNGC	3 cut(s)	97, 196, 382
Bsa29I	ATCGAT	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	293
BsaHI	GRCGYC	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse8I	GATNNNNATC	1 cut(s)	293
BseCI	ATCGAT	1 cut(s)	264
BseGI	GGATG	1 cut(s)	321
BseJI	GATNNNNATC	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	261, 264
BseX3I	CGGCCG	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	82, 206, 367
BsgI	GTGCAG	2 cut(s)	184, 213
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	348
BshVI	ATCGAT	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	349
BsiSI	CCGG	2 cut(s)	349, 359
BsmAI	GTCTC	1 cut(s)	102
BsmBI	CGTCTC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	348
Bsp143I	GATC	7 cut(s)	15, 218, 243, 261, 355, 390, 409
BspACI	CCGC	2 cut(s)	57, 369
BspANI	GGCC	1 cut(s)	348
BspCNI	CTCAG	3 cut(s)	260, 265, 426
BspDI	ATCGAT	1 cut(s)	264
BspPI	GGATC	2 cut(s)	251, 350
BsrBI	CCGCTC	1 cut(s)	369
BssMI	GATC	7 cut(s)	15, 218, 243, 261, 355, 390, 409
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	4 cut(s)	128, 247, 273, 413
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	7 cut(s)	18, 221, 246, 264, 358, 393, 412
BstMAI	GTCTC	1 cut(s)	102
BstMBI	GATC	7 cut(s)	15, 218, 243, 261, 355, 390, 409
BstMCI	CGRYCG	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	82, 206, 367
BstX2I	RGATCY	3 cut(s)	218, 243, 355
BstYI	RGATCY	3 cut(s)	218, 243, 355
BstZI	CGGCCG	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	155, 172
Cac8I	GCNNGC	1 cut(s)	402
ClaI	ATCGAT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	330
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	1 cut(s)	302
CviJI	RGCY	6 cut(s)	197, 335, 348, 362, 380, 404
CviKI_1	RGCY	6 cut(s)	197, 335, 348, 362, 380, 404
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	4 cut(s)	128, 247, 273, 413
DpnI	GATC	7 cut(s)	17, 220, 245, 263, 357, 392, 411
DpnII	GATC	7 cut(s)	15, 218, 243, 261, 355, 390, 409
DraIII	CACNNNGTG	1 cut(s)	304
EaeI	YGGCCR	1 cut(s)	346
EagI	CGGCCG	1 cut(s)	346
EclXI	CGGCCG	1 cut(s)	346
Eco52I	CGGCCG	1 cut(s)	346
Esp3I	CGTCTC	1 cut(s)	102
FaeI	CATG	1 cut(s)	305
FaiI	YATR	7 cut(s)	7, 9, 20, 182, 303, 387, 389
FatI	CATG	1 cut(s)	301
FauI	CCCGC	1 cut(s)	50
FauNDI	CATATG	1 cut(s)	387
Fnu4HI	GCNGC	3 cut(s)	96, 195, 381
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	3 cut(s)	96, 195, 381
GluI	GCNGC	3 cut(s)	96, 195, 381
HaeIII	GGCC	1 cut(s)	348
HapII	CCGG	2 cut(s)	349, 359
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	1 cut(s)	305
HinfI	GANTC	3 cut(s)	71, 132, 289
HpaII	CCGG	2 cut(s)	349, 359
Hpy188I	TCNGA	4 cut(s)	38, 238, 250, 274
Hpy188III	TCNNGA	2 cut(s)	105, 120
HpyAV	CCTTC	2 cut(s)	19, 85
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	3 cut(s)	165, 194, 230
HpyF3I	CTNAG	4 cut(s)	128, 247, 273, 413
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	305
Kzo9I	GATC	7 cut(s)	15, 218, 243, 261, 355, 390, 409
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	5 cut(s)	105, 362, 372, 386, 400
Lsp1109I	GCAGC	3 cut(s)	82, 206, 367
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	7 cut(s)	17, 220, 245, 263, 357, 392, 411
MbiI	CCGCTC	1 cut(s)	369
MboI	GATC	7 cut(s)	15, 218, 243, 261, 355, 390, 409
MflI	RGATCY	3 cut(s)	218, 243, 355
MluCI	AATT	2 cut(s)	140, 187
MnlI	CCTC	1 cut(s)	39
MseI	TTAA	3 cut(s)	12, 185, 424
MspI	CCGG	2 cut(s)	349, 359
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	7 cut(s)	15, 218, 243, 261, 355, 390, 409
NlaIII	CATG	1 cut(s)	305
NmuCI	GTSAC	1 cut(s)	112
PfeI	GAWTC	3 cut(s)	71, 132, 289
PkrI	GCNGC	3 cut(s)	97, 196, 382
PsuI	RGATCY	3 cut(s)	218, 243, 355
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	12, 185, 424
SatI	GCNGC	3 cut(s)	96, 195, 381
Sau3AI	GATC	7 cut(s)	15, 218, 243, 261, 355, 390, 409
SetI	ASST	5 cut(s)	114, 129, 337, 382, 419
Sse9I	AATT	2 cut(s)	140, 187
SsiI	CCGC	2 cut(s)	57, 369
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	264, 337
TasI	AATT	2 cut(s)	140, 187
TfiI	GAWTC	3 cut(s)	71, 132, 289
Tru1I	TTAA	3 cut(s)	12, 185, 424
Tru9I	TTAA	3 cut(s)	12, 185, 424
TscAI	CASTG	2 cut(s)	155, 172
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	95, 194, 380
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	155, 172
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.