Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Reverse (-)

16882289 .. 16887176

Gene Structure 4888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGAGTTGGATAGCATTCTAGGATATCTGGAGAGCAAGACCATCTTAGTTACTGGAGCCACTGGCTTATTAGGAATGGTATTTGTGGAGAAGATACTAAGGGTTCAACCAAATATTGGAAAGCTCTACCTTCTTATAAGAGCTTCTGATGCCAACTCTGCCACACATCGCATGCGCAATGAGATTATAGAGAAAGAGTTATTTAGGGTTCTTAGAGAAAAATGGGGCACAGATTTTGAATCCTTCATTTCAAAAAAAGTAGTTGCTATTCCGGGAGACGTAGCTTCTGCAGAACTAGGAGTGAAAGGATTTGAATTGAGGGAACGAATGTGCAATGAAATACAAATTATACTTCATTCTGCAGCAACCGTGGATTTTAATGACAGGTATGATATTGCTTTGGATGTGAATACATTTGGGGTTCTGCATGTGTTGAACTTTGCGAAGAAGGGTAAAACGGTCTTTCTCTATTTCTCTCCCTCATTTCACTTTGTCATTTTGCCTCTTACATCCCAAGCCCCTCTGCTCAAAACCACCACCGTCGACGTCTCCTCTCCCAACCTCATCACCTGTCTCTACCACACTAATTTCGCCCTCTTCTTCATGACCTGGCACCGACTTCTCCCTCTTCTTCCTGACTTGGTCTCGCTTCTTTCTCGTCCTTTCTATCTCTCATCTCTTCAGAACTCGATTCGTAGGCCCTTGCTCTCTTTATTCGGATCGATTCCCACGTTGGATTTCCAAGCCTGGTTTTCCAGCGCTGGATCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

257

Amino Acids

28.95

Weight (kDa)

8.83

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	17 - 160	2.3e-37	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AatII	GACGTC	1 cut(s)	549
Acc16I	TGCGCA	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	612
AccB7I	CCANNNNNTGG	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	543
AclWI	GGATC	2 cut(s)	727, 772
AcuI	CTGAAG	1 cut(s)	665
AcyI	GRCGYC	1 cut(s)	546
AfeI	AGCGCT	1 cut(s)	760
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	107, 239, 252, 314, 436
AjnI	CCWGG	2 cut(s)	608, 746
AluBI	AGCT	3 cut(s)	124, 143, 284
AluI	AGCT	3 cut(s)	124, 143, 284
Alw26I	GTCTC	4 cut(s)	270, 553, 578, 649
AlwI	GGATC	2 cut(s)	727, 772
Aor51HI	AGCGCT	1 cut(s)	760
AoxI	GGCC	1 cut(s)	698
ApeKI	GCWGC	1 cut(s)	362
AspLEI	GCGC	2 cut(s)	177, 761
AspS9I	GGNCC	1 cut(s)	699
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	559
BaeGI	GKGCMC	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	2 cut(s)	610, 748
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	4 cut(s)	270, 553, 578, 649
BfaI	CTAG	2 cut(s)	20, 296
BfmI	CTRYAG	2 cut(s)	288, 360
BfoI	RGCGCY	1 cut(s)	762
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	3 cut(s)	273, 610, 748
BmgT120I	GGNCC	1 cut(s)	699
BmiI	GGNNCC	2 cut(s)	58, 614
BmrFI	CCNGG	3 cut(s)	273, 610, 748
BmsI	GCATC	1 cut(s)	139
BpmI	CTGGAG	2 cut(s)	50, 75
BpuMI	CCSGG	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	722
BsaHI	GRCGYC	1 cut(s)	546
BsaI	GGTCTC	1 cut(s)	649
BsaJI	CCNNGG	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	2 cut(s)	58, 67
Bse3DI	GCAATG	2 cut(s)	184, 340
BseBI	CCWGG	2 cut(s)	610, 748
BseCI	ATCGAT	1 cut(s)	722
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	2 cut(s)	409, 509
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMI	GCAATG	2 cut(s)	184, 340
BseNI	ACTGG	2 cut(s)	58, 67
BseRI	GAGGAG	1 cut(s)	541
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	700
BshNI	GGYRCC	1 cut(s)	612
BshVI	ATCGAT	1 cut(s)	722
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmAI	GTCTC	4 cut(s)	270, 553, 578, 649
BsmBI	CGTCTC	2 cut(s)	270, 553
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	700
Bso31I	GGTCTC	1 cut(s)	649
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	719, 764
BspANI	GGCC	1 cut(s)	700
BspDI	ATCGAT	1 cut(s)	722
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	58, 614
BspMAI	CTGCAG	2 cut(s)	292, 364
BspPI	GGATC	2 cut(s)	727, 772
BspT107I	GGYRCC	1 cut(s)	612
BspTNI	GGTCTC	1 cut(s)	649
BsrDI	GCAATG	2 cut(s)	184, 340
BsrI	ACTGG	2 cut(s)	58, 67
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	2 cut(s)	719, 764
BssNI	GRCGYC	1 cut(s)	546
Bst2UI	CCWGG	2 cut(s)	610, 748
Bst4CI	ACNGT	3 cut(s)	370, 460, 541
Bst6I	CTCTTC	3 cut(s)	602, 633, 684
BstACI	GRCGYC	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	46, 98, 212
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	409, 509
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	2 cut(s)	177, 761
BstKTI	GATC	2 cut(s)	722, 767
BstMAI	GTCTC	4 cut(s)	270, 553, 578, 649
BstMBI	GATC	2 cut(s)	719, 764
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 158
BstNI	CCWGG	2 cut(s)	610, 748
BstNSI	RCATGY	2 cut(s)	175, 431
BstSCI	CCNGG	3 cut(s)	271, 608, 746
BstSFI	CTRYAG	2 cut(s)	288, 360
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	374
Bsu15I	ATCGAT	1 cut(s)	722
BsuRI	GGCC	1 cut(s)	700
BsuTUI	ATCGAT	1 cut(s)	722
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	409, 509
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	173
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	2 cut(s)	177, 761
Cfr13I	GGNCC	1 cut(s)	699
ClaI	ATCGAT	1 cut(s)	722
CviAII	CATG	3 cut(s)	172, 428, 604
CviJI	RGCY	8 cut(s)	59, 66, 124, 143, 284, 518, 700, 746
CviKI_1	RGCY	8 cut(s)	59, 66, 124, 143, 284, 518, 700, 746
DdeI	CTNAG	3 cut(s)	46, 98, 212
DpnI	GATC	2 cut(s)	721, 766
DpnII	GATC	2 cut(s)	719, 764
Eam1104I	CTCTTC	3 cut(s)	602, 633, 684
EarI	CTCTTC	3 cut(s)	602, 633, 684
Eco31I	GGTCTC	1 cut(s)	649
Eco32I	GATATC	1 cut(s)	26
Eco47III	AGCGCT	1 cut(s)	760
Eco57I	CTGAAG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	699
EcoRII	CCWGG	2 cut(s)	608, 746
EcoRV	GATATC	1 cut(s)	26
Esp3I	CGTCTC	2 cut(s)	270, 553
FaeI	CATG	3 cut(s)	175, 431, 607
FaiI	YATR	7 cut(s)	137, 173, 188, 350, 390, 429, 605
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	3 cut(s)	171, 427, 603
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	2 cut(s)	416, 496
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	2 cut(s)	20, 296
FspI	TGCGCA	1 cut(s)	176
GlaI	GCGC	2 cut(s)	176, 760
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	50, 75
HaeII	RGCGCY	1 cut(s)	762
HaeIII	GGCC	1 cut(s)	700
HapII	CCGG	1 cut(s)	272
HhaI	GCGC	2 cut(s)	177, 761
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	175, 431, 607
Hin6I	GCGC	2 cut(s)	175, 759
HinP1I	GCGC	2 cut(s)	175, 759
HincII	GTYRAC	1 cut(s)	544
HindII	GTYRAC	1 cut(s)	544
HinfI	GANTC	3 cut(s)	239, 691, 724
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	1 cut(s)	544
Hpy188I	TCNGA	3 cut(s)	148, 684, 719
Hpy188III	TCNNGA	3 cut(s)	29, 604, 635
Hpy8I	GTNNAC	1 cut(s)	544
Hpy99I	CGWCG	2 cut(s)	545, 548
HpyAV	CCTTC	3 cut(s)	140, 253, 442
HpyCH4III	ACNGT	3 cut(s)	370, 460, 541
HpyCH4IV	ACGT	3 cut(s)	279, 546, 731
HpyCH4V	TGCA	4 cut(s)	290, 333, 362, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 158
HpyF3I	CTNAG	3 cut(s)	46, 98, 212
HpySE526I	ACGT	3 cut(s)	279, 546, 731
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	3 cut(s)	175, 431, 607
HspAI	GCGC	2 cut(s)	175, 759
Kzo9I	GATC	2 cut(s)	719, 764
LmnI	GCTCC	1 cut(s)	56
Lsp1109I	GCAGC	1 cut(s)	374
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	2 cut(s)	20, 296
MaeII	ACGT	3 cut(s)	279, 546, 731
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	2 cut(s)	721, 766
MboI	GATC	2 cut(s)	719, 764
MboII	GAAGA	7 cut(s)	103, 457, 589, 592, 620, 623, 671
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	3 cut(s)	314, 345, 586
MmeI	TCCRAC	1 cut(s)	714
MnlI	CCTC	8 cut(s)	312, 490, 513, 531, 562, 572, 605, 636
MseI	TTAA	1 cut(s)	378
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	3 cut(s)	273, 610, 748
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	610, 748
MwoI	GCNNNNNNNGC	2 cut(s)	149, 158
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	2 cut(s)	719, 764
NlaIII	CATG	3 cut(s)	175, 431, 607
NlaIV	GGNNCC	2 cut(s)	58, 614
NsbI	TGCGCA	1 cut(s)	176
NspI	RCATGY	2 cut(s)	175, 431
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	728
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	239, 691, 724
PflFI	GACNNNGTC	1 cut(s)	641
PflMI	CCANNNNNTGG	1 cut(s)	116
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	364
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	608, 746
PspGI	CCWGG	2 cut(s)	608, 746
PspN4I	GGNNCC	2 cut(s)	58, 614
PspPI	GGNCC	1 cut(s)	699
PstI	CTGCAG	2 cut(s)	292, 364
PsyI	GACNNNGTC	1 cut(s)	641
SalI	GTCGAC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	2 cut(s)	719, 764
Sau96I	GGNCC	1 cut(s)	699
ScrFI	CCNGG	3 cut(s)	273, 610, 748
SduI	GDGCHC	1 cut(s)	230
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	2 cut(s)	288, 360
SgrDI	CGTCGACG	1 cut(s)	542
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	3 cut(s)	314, 345, 586
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	2 cut(s)	20, 296
StyD4I	CCNGG	3 cut(s)	271, 608, 746
TaaI	ACNGT	3 cut(s)	370, 460, 541
TaiI	ACGT	3 cut(s)	282, 549, 734
TaqI	TCGA	4 cut(s)	543, 689, 722, 767
TasI	AATT	3 cut(s)	314, 345, 586
TfiI	GAWTC	3 cut(s)	239, 691, 724
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	362
TspDTI	ATGAA	4 cut(s)	235, 344, 351, 592
TspRI	CASTG	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	641
Van91I	CCANNNNNTGG	1 cut(s)	116
XceI	RCATGY	2 cut(s)	175, 431
XmiI	GTMKAC	1 cut(s)	543
XspI	CTAG	2 cut(s)	20, 296
ZraI	GACGTC	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.