Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002252.1

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

46387 .. 50368

Gene Structure 3982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002252.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgacagcggcagaggaggtgcggtcatggcagaacaattggtgcccagagcatttctgggtagtgatgagatctgcgcgtgagccggtttttggtgtcatcagacgatgtggaggccggactcggagactggcgacttatgtgtgtggtgaaagggcagggctgatactagaggactcctcttcaatggatgagatggcgaaaaaacccagtaaatttgacttgaaatcgcaggaaaagaaaatggtggagaacaagttgaaagaactacaagcacaaaacgcttcggaagaagttataacaagtgcaatgaaggacttaggcaccgcaaggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

112

Amino Acids

12.81

Weight (kDa)

8.88

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	299
AccB1I	GGYRCC	2 cut(s)	42, 323
AccII	CGCG	1 cut(s)	79
AciI	CCGC	3 cut(s)	8, 22, 327
AcsI	RAATTY	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	186, 226, 262
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	215
AspLEI	GCGC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	47
BanI	GGYRCC	2 cut(s)	42, 323
BccI	CCATC	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	121
BfaI	CTAG	1 cut(s)	170
BglII	AGATCT	1 cut(s)	71
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	44, 325
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BsaXI	ACNNNNNCTCC	4 cut(s)	8, 38, 242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	2 cut(s)	135, 210
Bse3DI	GCAATG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	135, 210
BseRI	GAGGAG	2 cut(s)	29, 169
BseSI	GKGCMC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	2 cut(s)	42, 323
BsiSI	CCGG	2 cut(s)	86, 118
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	3 cut(s)	8, 22, 327
BspANI	GGCC	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	44, 325
BspT107I	GGYRCC	2 cut(s)	42, 323
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	85
BsrI	ACTGG	2 cut(s)	135, 210
BssAI	RCCGGY	1 cut(s)	85
BssMI	GATC	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	187
BstDEI	CTNAG	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	74
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 281
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	196
CfoI	GCGC	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	85
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	3 cut(s)	85, 117, 163
CviKI_1	RGCY	3 cut(s)	85, 117, 163
DdeI	CTNAG	1 cut(s)	319
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
FaeI	CATG	1 cut(s)	30
FaiI	YATR	3 cut(s)	28, 141, 299
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	2 cut(s)	86, 118
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	2 cut(s)	121, 176
HpaII	CCGG	2 cut(s)	86, 118
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	3 cut(s)	104, 126, 289
HpyAV	CCTTC	1 cut(s)	307
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 281
HpyF3I	CTNAG	1 cut(s)	319
Hsp92II	CATG	1 cut(s)	30
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	43, 60, 99, 116, 131, 144, 218, 223
MaeI	CTAG	1 cut(s)	170
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	2 cut(s)	174, 302
MfeI	CAATTG	1 cut(s)	37
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	2 cut(s)	37, 215
MlyI	GAGTC	2 cut(s)	115, 170
MnlI	CCTC	5 cut(s)	7, 10, 107, 166, 190
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	2 cut(s)	86, 118
MunI	CAATTG	1 cut(s)	37
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	28, 281
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	30
NlaIV	GGNNCC	2 cut(s)	44, 325
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	115, 170
PpsI	GAGTC	2 cut(s)	115, 170
PsiI	TTATAA	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	44, 325
PsuI	RGATCY	1 cut(s)	71
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	1 cut(s)	71
SchI	GAGTC	2 cut(s)	115, 170
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	2 cut(s)	21, 335
Sse9I	AATT	2 cut(s)	37, 215
SsiI	CCGC	3 cut(s)	8, 22, 327
SspMI	CTAG	1 cut(s)	170
TasI	AATT	2 cut(s)	37, 215
TauI	GCSGC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	326
XapI	RAATTY	1 cut(s)	215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	54
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.