Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

51777004 .. 51780115

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGTTGGATAGCATTCTAGAACATCTGGAGAACAAGACCATCTTAGTTACTGGAGCCACTGGCTTTCTAGGAATGGTATTTGTGGAGAAGATACTAAGGGTTCAACCAAATATTGGAAAGCTCTACCTTCTTATAAGAGCTTCTGATGCCAAATCTGCCACACATCGCATGCACAATGAGATTTTAGAGAAAGAGTTATTTAGGGTTCTTAGAGAAAAATGGGGTGCAGATTTTGAATCCTTCATTTCAAAAAAAGTAATTGCTATTCCGGGAGACGTAGCTTCTGCAGAACTAGGAGTGAAAGGATTTGAATTGAGGGAACGTATGTACAACGAAATACAATTTATACTTCATTCTGCAGCAACCGTGGATTTTAATGATAGTCTCCCTAGATGTTGTCTATCAGATGTCGTCGGCGAGAAGCTCTTTGGAGGAAGGCTGCCAGATTGGTTTGACGATAGAGGTAGCTCCTTTGGTGGGTCAGCTCTCGCCAGACCTTGGTTACAGGGATGGAGATTGGTGGGTTTAGCTTATGTAAGCTCCGGAAGGACTGGCCTTATACTAGAAGACTCCTCTCCAATGGATGAGCTGATAAAGGAAATCACTAAATCTGACTTGAAAGTACTGGAAAGGAACATGGTGGTGGACAAATTAAATGAACTAAAAGCACAAAATGCTTCAGAAAAGGTTATTACGAAGAAGATGAAGGACCTGGGCGCTGCAAGGTTTTTGAGCACTGACTTAACTCTGCTTTATAATGTTTCTAAAGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

259

Amino Acids

29.07

Weight (kDa)

6.16

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	17 - 140	1.8e-28	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	137, 759
AccB7I	CCANNNNNTGG	2 cut(s)	116, 501
AccIII	TCCGGA	1 cut(s)	545
AcuI	CTGAAG	1 cut(s)	666
AfaI	GTAC	2 cut(s)	332, 627
AfiI	CCNNNNNNNGG	3 cut(s)	116, 480, 501
AgsI	TTSAA	5 cut(s)	107, 239, 252, 314, 622
AjnI	CCWGG	1 cut(s)	714
AluBI	AGCT	9 cut(s)	124, 143, 284, 427, 471, 488, 533, 543, 592
AluI	AGCT	9 cut(s)	124, 143, 284, 427, 471, 488, 533, 543, 592
Alw21I	GWGCWC	1 cut(s)	740
Alw26I	GTCTC	2 cut(s)	270, 392
Aor13HI	TCCGGA	1 cut(s)	545
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	3 cut(s)	362, 442, 722
AspLEI	GCGC	1 cut(s)	722
AspS9I	GGNCC	1 cut(s)	712
AsuC2I	CCSGG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	712
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	740
BbvI	GCAGC	3 cut(s)	374, 429, 709
BccI	CCATC	2 cut(s)	50, 507
BciT130I	CCWGG	1 cut(s)	716
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	270, 392
BfaI	CTAG	5 cut(s)	20, 71, 296, 393, 566
BfmI	CTRYAG	2 cut(s)	288, 360
BfoI	RGCGCY	1 cut(s)	723
BisI	GCNGC	3 cut(s)	363, 443, 723
BlsI	GCNGC	3 cut(s)	364, 444, 724
BmcAI	AGTACT	1 cut(s)	627
Bme1390I	CCNGG	2 cut(s)	273, 716
Bme18I	GGWCC	1 cut(s)	712
BmgT120I	GGNCC	1 cut(s)	712
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	273, 716
BmsI	GCATC	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	576
BpmI	CTGGAG	2 cut(s)	50, 75
BpuMI	CCSGG	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	369, 500, 715
BsaWI	WCCGGW	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 480, 501
Bse1I	ACTGG	4 cut(s)	58, 67, 559, 633
BseAI	TCCGGA	1 cut(s)	545
BseBI	CCWGG	1 cut(s)	716
BseDI	CCNNGG	3 cut(s)	369, 500, 715
BseGI	GGATG	2 cut(s)	518, 592
BseLI	CCNNNNNNNGG	3 cut(s)	116, 480, 501
BseNI	ACTGG	4 cut(s)	58, 67, 559, 633
BseRI	GAGGAG	1 cut(s)	565
BseXI	GCAGC	3 cut(s)	374, 429, 709
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	740
BsiSI	CCGG	2 cut(s)	272, 546
BslI	CCNNNNNNNGG	3 cut(s)	116, 480, 501
BsmAI	GTCTC	2 cut(s)	270, 392
BsmBI	CGTCTC	1 cut(s)	270
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	740
Bsp13I	TCCGGA	1 cut(s)	545
Bsp1407I	TGTACA	1 cut(s)	330
BspANI	GGCC	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	545
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	2 cut(s)	292, 364
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	4 cut(s)	58, 67, 559, 633
BssECI	CCNNGG	3 cut(s)	369, 500, 715
BssT1I	CCWWGG	1 cut(s)	500
Bst2UI	CCWGG	1 cut(s)	716
Bst4CI	ACNGT	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	3 cut(s)	46, 98, 212
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	518, 592
BstH2I	RGCGCY	1 cut(s)	723
BstHHI	GCGC	1 cut(s)	722
BstMAI	GTCTC	2 cut(s)	270, 392
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 158, 677
BstNI	CCWGG	1 cut(s)	716
BstNSI	RCATGY	1 cut(s)	175
BstSCI	CCNGG	2 cut(s)	271, 714
BstSFI	CTRYAG	2 cut(s)	288, 360
BstV1I	GCAGC	3 cut(s)	374, 429, 709
BstV2I	GAAGAC	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	369
BtgZI	GCGATG	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	518, 592
BtsIMutI	CAGTG	2 cut(s)	60, 738
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	712
Csp6I	GTAC	2 cut(s)	331, 626
CviAII	CATG	2 cut(s)	172, 640
CviQI	GTAC	2 cut(s)	331, 626
DdeI	CTNAG	3 cut(s)	46, 98, 212
Eco130I	CCWWGG	1 cut(s)	500
Eco47I	GGWCC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	666
EcoO109I	RGGNCCY	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	714
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	2 cut(s)	175, 643
FaiI	YATR	8 cut(s)	137, 173, 329, 350, 537, 563, 641, 759
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	2 cut(s)	171, 639
Fnu4HI	GCNGC	3 cut(s)	363, 443, 723
FokI	GGATG	2 cut(s)	525, 599
Fsp4HI	GCNGC	3 cut(s)	363, 443, 723
FspBI	CTAG	5 cut(s)	20, 71, 296, 393, 566
GlaI	GCGC	1 cut(s)	721
GluI	GCNGC	3 cut(s)	363, 443, 723
GsuI	CTGGAG	2 cut(s)	50, 75
HaeII	RGCGCY	1 cut(s)	723
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	272, 546
HhaI	GCGC	1 cut(s)	722
Hin1II	CATG	2 cut(s)	175, 643
Hin6I	GCGC	1 cut(s)	720
HinP1I	GCGC	1 cut(s)	720
HinfI	GANTC	2 cut(s)	239, 572
HpaII	CCGG	2 cut(s)	272, 546
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	4 cut(s)	148, 409, 616, 685
Hpy188III	TCNNGA	3 cut(s)	20, 29, 546
Hpy8I	GTNNAC	1 cut(s)	649
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	5 cut(s)	140, 253, 432, 543, 703
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	2 cut(s)	279, 325
HpyCH4V	TGCA	5 cut(s)	175, 230, 290, 362, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 158, 677
HpyF3I	CTNAG	3 cut(s)	46, 98, 212
HpySE526I	ACGT	2 cut(s)	279, 325
Hsp92II	CATG	2 cut(s)	175, 643
HspAI	GCGC	1 cut(s)	720
Kpn2I	TCCGGA	1 cut(s)	545
LmnI	GCTCC	3 cut(s)	56, 476, 548
Lsp1109I	GCAGC	3 cut(s)	374, 429, 709
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	5 cut(s)	20, 71, 296, 393, 566
MaeII	ACGT	2 cut(s)	279, 325
MaeIII	GTNAC	2 cut(s)	49, 504
MboII	GAAGA	4 cut(s)	103, 581, 712, 715
MhlI	GDGCHC	1 cut(s)	740
MluCI	AATT	4 cut(s)	261, 314, 344, 653
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	4 cut(s)	312, 428, 458, 586
MroI	TCCGGA	1 cut(s)	545
MseI	TTAA	4 cut(s)	378, 656, 746, 778
MslI	CAYNNNNRTG	1 cut(s)	644
MspI	CCGG	2 cut(s)	272, 546
MspR9I	CCNGG	2 cut(s)	273, 716
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	716
MwoI	GCNNNNNNNGC	3 cut(s)	149, 158, 677
NciI	CCSGG	1 cut(s)	273
NlaIII	CATG	2 cut(s)	175, 643
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	175
PaeI	GCATGC	1 cut(s)	175
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	239
PflMI	CCANNNNNTGG	2 cut(s)	116, 501
PfoI	TCCNGGA	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	364, 444, 724
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
PpuMI	RGGWCCY	1 cut(s)	712
PsiI	TTATAA	2 cut(s)	137, 759
Psp5II	RGGWCCY	1 cut(s)	712
Psp6I	CCWGG	1 cut(s)	714
PspGI	CCWGG	1 cut(s)	714
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	1 cut(s)	712
PspPPI	RGGWCCY	1 cut(s)	712
PstI	CTGCAG	2 cut(s)	292, 364
RsaI	GTAC	2 cut(s)	332, 627
RsaNI	GTAC	2 cut(s)	331, 626
RseI	CAYNNNNRTG	1 cut(s)	644
SaqAI	TTAA	4 cut(s)	378, 656, 746, 778
SatI	GCNGC	3 cut(s)	363, 443, 723
Sau96I	GGNCC	1 cut(s)	712
ScaI	AGTACT	1 cut(s)	627
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	2 cut(s)	273, 716
SduI	GDGCHC	1 cut(s)	740
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	2 cut(s)	288, 360
SinI	GGWCC	1 cut(s)	712
SmiMI	CAYNNNNRTG	1 cut(s)	644
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	4 cut(s)	261, 314, 344, 653
SspI	AATATT	1 cut(s)	115
SspMI	CTAG	5 cut(s)	20, 71, 296, 393, 566
StyD4I	CCNGG	2 cut(s)	271, 714
StyI	CCWWGG	1 cut(s)	500
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	2 cut(s)	282, 328
TasI	AATT	4 cut(s)	261, 314, 344, 653
TatI	WGTACW	2 cut(s)	330, 625
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	4 cut(s)	378, 656, 746, 778
Tru9I	TTAA	4 cut(s)	378, 656, 746, 778
TscAI	CASTG	2 cut(s)	67, 745
TseI	GCWGC	3 cut(s)	362, 442, 722
TspDTI	ATGAA	4 cut(s)	235, 344, 675, 722
TspRI	CASTG	2 cut(s)	67, 745
Van91I	CCANNNNNTGG	2 cut(s)	116, 501
VpaK11BI	GGWCC	1 cut(s)	712
XbaI	TCTAGA	1 cut(s)	19
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	5 cut(s)	20, 71, 296, 393, 566
ZrmI	AGTACT	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.