Rh5DG307000

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
38808610 .. 38815468
6859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG307000.1

Sequence Viewer

Length: 1236 bp
ATGGGGTTGGACAGCATACTAGGTTATCTGCAGAATAAGACCATTTTGATCACTGGTGCGACCGGCTTCCTTGGAATGGTGTTTGTGGAGAAAATTCTAAGGGTGCAACCAAATGTGAAGAAGCTCTATCTTCTTGTAAGAGCCTCTGATACCAAGTCAGCAACACATCGCATGCAAGATGAGATTATAGGGAAGGAATTGTTCAGGGTTCTGAGGGAGAAATGGGGGGCAGATTTTGATTCTTTCATTTCTGAAAAAGTTGTTGCTCTCCCAGGAGATGTCACTTTCGAGAACCTCGGATTGAAAGAACCCAGATTGGTGGAAGAACTAAACAATGAAATACAGATAATATTCAACTCTGCAGCCACCACCAACTTTGACGAAAGATATGATATTTCACTGGCGGTAAATACTTTTGGAGTTATGCAAGTGTTAAGCTTTGCGAACAAATGTTTCAAACTACAGATACTTCTCCATGTATCAACTGCTTACGTGTGTGGGGAAAGGGCGGGTCTCATACCAGAAGACTCATCTTCAATGGATAAGATGGTAAAGGAGATGGGTAATTTTGATGTTGAAGCAGTCGAAAAGGGCCTTGTGCAGGAGAAATTGAATGAACTAAAAGCACTAGATGCTTCAGAAGAAGTTGTTACAAACACAATGAAGGATTTCGGCATTAAAAGGGCTAGACTATATGGATGGCCAAACACGTATGTGTTCACAAAAGCAATGGGTGAAATATTTCTACAACGCTCGAAAGACAATTTGCCTCTTGTGGTCGTACGTCCAACAATAGTTACTAGCACTTACAAAGAACCATTTTCCGGTTGGATCCAAGGTTTCAGAACTATAGATAGTGTAATTGCTGGTTATTGCAAAGGCAAGCTGACATGCTTGCTTGTCGATCCTGCATCAGTACTCGATATGATTCCTGTTGACATGTTGGTAAATTCAATAATCATAGCAATGGTGGCAAATGCAAATAAGTCTTCTGGAAATATTATTTATCATGTCGGATCCTCACTGAGAAACCCTTTGAATTTCTTTCAAATGCACAACTTTATCTTCCAATACTTCACCAAGAATCCATGGCTTGATAAGGATGGTAAGCCTGTCATTGTTACCAAGGGTACAATATTGACGACTATGGCTACTTTTCGCATGTACATGAATATTCGCTACATGCTACCTTTGAAGGTTTGTTCAAGCAAGCTACAAATTTATATCATGGAATAA

Protein Analysis

411

Amino Acids

46.36

Weight (kDa)

8.4

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 15 - 179 7e-07 NAD dependent epimerase/dehydratase family
NAD_binding_4 PF07993 17 - 319 1.6e-73 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 404, 509
AclWI GGATC 5 cut(s) 826, 839, 899, 1011, 1024
AcoI YGGCCR 1 cut(s) 701
AcsI RAATTY 4 cut(s) 93, 949, 1039, 1218
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 4 cut(s) 783, 918, 1132, 1166
AfiI CCNNNNNNNGG 3 cut(s) 76, 601, 824
AflIII ACRYGT 3 cut(s) 492, 708, 939
AjnI CCWGG 1 cut(s) 271
AleI CACNNNNGTG 1 cut(s) 713
AluBI AGCT 4 cut(s) 124, 438, 886, 1213
AluI AGCT 4 cut(s) 124, 438, 886, 1213
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 5 cut(s) 826, 839, 899, 1011, 1024
AoxI GGCC 2 cut(s) 592, 701
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 4 cut(s) 93, 949, 1039, 1218
Asp700I GAANNNNTTC 2 cut(s) 668, 741
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 746, 1069
BalI TGGCCA 1 cut(s) 703
BamHI GGATCC 2 cut(s) 831, 1016
BbsI GAAGAC 2 cut(s) 531, 981
BbvI GCAGC 1 cut(s) 374
BccI CCATC 4 cut(s) 541, 553, 693, 1097
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 4 cut(s) 20, 629, 687, 801
BfmI CTRYAG 4 cut(s) 29, 360, 461, 849
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 918
Bme1390I CCNGG 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 2 cut(s) 833, 1018
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 2 cut(s) 622, 920
BpiI GAAGAC 2 cut(s) 531, 981
BsaAI YACGTR 2 cut(s) 493, 711
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 6 cut(s) 70, 271, 295, 835, 1088, 1125
BsaWI WCCGGW 1 cut(s) 824
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 601, 824
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 2 cut(s) 58, 405
Bse3DI GCAATG 2 cut(s) 735, 972
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 6 cut(s) 70, 271, 295, 835, 1088, 1125
BseGI GGATG 2 cut(s) 704, 1108
BseLI CCNNNNNNNGG 3 cut(s) 76, 601, 824
BseMI GCAATG 2 cut(s) 735, 972
BseMII CTCAG 2 cut(s) 203, 1016
BseNI ACTGG 2 cut(s) 58, 405
BseXI GCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 620
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 594, 703
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 63, 825
BsiWI CGTACG 1 cut(s) 781
BslI CCNNNNNNNGG 3 cut(s) 76, 601, 824
BsmAI GTCTC 1 cut(s) 518
BsnI GGCC 2 cut(s) 594, 703
Bso31I GGTCTC 1 cut(s) 518
Bsp1407I TGTACA 1 cut(s) 1164
Bsp143I GATC 4 cut(s) 48, 831, 904, 1016
Bsp19I CCATGG 1 cut(s) 1088
BspACI CCGC 2 cut(s) 404, 509
BspANI GGCC 2 cut(s) 594, 703
BspCNI CTCAG 2 cut(s) 204, 1017
BspLI GGNNCC 2 cut(s) 833, 1018
BspMAI CTGCAG 2 cut(s) 33, 364
BspPI GGATC 5 cut(s) 826, 839, 899, 1011, 1024
BspTNI GGTCTC 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 735, 972
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 1164
BsrI ACTGG 2 cut(s) 58, 405
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 6 cut(s) 70, 271, 295, 835, 1088, 1125
BssMI GATC 4 cut(s) 48, 831, 904, 1016
BssT1I CCWWGG 4 cut(s) 70, 835, 1088, 1125
Bst2UI CCWGG 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 1164
BstBAI YACGTR 2 cut(s) 493, 711
BstC8I GCNNGC 4 cut(s) 173, 884, 896, 1211
BstDEI CTNAG 3 cut(s) 98, 212, 1025
BstDSI CCRYGG 1 cut(s) 1088
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 2 cut(s) 704, 1108
BstKTI GATC 4 cut(s) 51, 834, 907, 1019
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 4 cut(s) 48, 831, 904, 1016
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 632, 971
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 5 cut(s) 175, 894, 943, 1165, 1186
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 4 cut(s) 29, 360, 461, 849
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 2 cut(s) 531, 981
BstX2I RGATCY 2 cut(s) 831, 1016
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 2 cut(s) 831, 1016
BsuRI GGCC 2 cut(s) 594, 703
BtgI CCRYGG 1 cut(s) 1088
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 2 cut(s) 704, 1108
BtsIMutI CAGTG 3 cut(s) 51, 398, 1022
Cac8I GCNNGC 4 cut(s) 173, 884, 896, 1211
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 592
Csp6I GTAC 4 cut(s) 782, 917, 1131, 1165
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviQI GTAC 4 cut(s) 782, 917, 1131, 1165
DdeI CTNAG 3 cut(s) 98, 212, 1025
DpnI GATC 4 cut(s) 50, 833, 906, 1018
DpnII GATC 4 cut(s) 48, 831, 904, 1016
EaeI YGGCCR 1 cut(s) 701
Eco130I CCWWGG 4 cut(s) 70, 835, 1088, 1125
Eco31I GGTCTC 1 cut(s) 518
Eco57I CTGAAG 1 cut(s) 621
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 4 cut(s) 70, 835, 1088, 1125
ErhI CCWWGG 4 cut(s) 70, 835, 1088, 1125
FauI CCCGC 1 cut(s) 502
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 2 cut(s) 711, 1115
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 4 cut(s) 20, 629, 687, 801
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 2 cut(s) 594, 703
HapII CCGG 2 cut(s) 63, 825
HincII GTYRAC 1 cut(s) 937
HindII GTYRAC 1 cut(s) 937
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 4 cut(s) 239, 527, 928, 1084
HpaII CCGG 2 cut(s) 63, 825
HphI GGTGA 2 cut(s) 746, 1069
Hpy166II GTNNAC 2 cut(s) 720, 937
Hpy188I TCNGA 7 cut(s) 148, 213, 253, 299, 640, 845, 1016
Hpy188III TCNNGA 2 cut(s) 289, 993
Hpy8I GTNNAC 2 cut(s) 720, 937
HpyAV CCTTC 3 cut(s) 187, 658, 1189
HpyCH4IV ACGT 3 cut(s) 492, 710, 784
HpyF10VI GCNNNNNNNGC 2 cut(s) 632, 971
HpyF3I CTNAG 3 cut(s) 98, 212, 1025
HpySE526I ACGT 3 cut(s) 492, 710, 784
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 48, 831, 904, 1016
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 2 cut(s) 622, 920
MaeI CTAG 4 cut(s) 20, 629, 687, 801
MaeII ACGT 3 cut(s) 492, 710, 784
MaeIII GTNAC 4 cut(s) 280, 649, 796, 1120
MalI GATC 4 cut(s) 50, 833, 906, 1018
MboI GATC 4 cut(s) 48, 831, 904, 1016
MboII GAAGA 8 cut(s) 122, 130, 335, 525, 536, 653, 981, 1057
MflI RGATCY 2 cut(s) 831, 1016
MlsI TGGCCA 1 cut(s) 703
MluCI AATT 9 cut(s) 93, 197, 565, 608, 763, 861, 949, 1039, 1218
MluNI TGGCCA 1 cut(s) 703
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 3 cut(s) 809, 812, 994
MnlI CCTC 5 cut(s) 154, 207, 305, 780, 1030
Mox20I TGGCCA 1 cut(s) 703
MroXI GAANNNNTTC 2 cut(s) 668, 741
MscI TGGCCA 1 cut(s) 703
MseI TTAA 2 cut(s) 434, 678
MslI CAYNNNNRTG 3 cut(s) 713, 965, 1166
Msp20I TGGCCA 1 cut(s) 703
MspI CCGG 2 cut(s) 63, 825
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 632, 971
NcoI CCATGG 1 cut(s) 1088
NdeII GATC 4 cut(s) 48, 831, 904, 1016
NlaIV GGNNCC 2 cut(s) 833, 1018
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 5 cut(s) 175, 894, 943, 1165, 1186
OliI CACNNNNGTG 1 cut(s) 713
PaeI GCATGC 1 cut(s) 175
PciI ACATGT 1 cut(s) 939
PdmI GAANNNNTTC 2 cut(s) 668, 741
PfeI GAWTC 3 cut(s) 239, 928, 1084
Pfl23II CGTACG 1 cut(s) 781
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Ppu21I YACGTR 2 cut(s) 493, 711
PscI ACATGT 1 cut(s) 939
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspLI CGTACG 1 cut(s) 781
PspN4I GGNNCC 2 cut(s) 833, 1018
PspPI GGNCC 1 cut(s) 592
PstI CTGCAG 2 cut(s) 33, 364
PsuI RGATCY 2 cut(s) 831, 1016
RsaI GTAC 4 cut(s) 783, 918, 1132, 1166
RsaNI GTAC 4 cut(s) 782, 917, 1131, 1165
RseI CAYNNNNRTG 3 cut(s) 713, 965, 1166
SaqAI TTAA 2 cut(s) 434, 678
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 4 cut(s) 48, 831, 904, 1016
Sau96I GGNCC 1 cut(s) 592
ScaI AGTACT 1 cut(s) 918
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 273
SfaNI GCATC 2 cut(s) 622, 920
SfcI CTRYAG 4 cut(s) 29, 360, 461, 849
SmiMI CAYNNNNRTG 3 cut(s) 713, 965, 1166
SphI GCATGC 1 cut(s) 175
Sse9I AATT 9 cut(s) 93, 197, 565, 608, 763, 861, 949, 1039, 1218
SsiI CCGC 2 cut(s) 404, 509
SspI AATATT 5 cut(s) 351, 741, 1000, 1137, 1174
SspMI CTAG 4 cut(s) 20, 629, 687, 801
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 4 cut(s) 70, 835, 1088, 1125
TaiI ACGT 3 cut(s) 495, 713, 787
TaqI TCGA 5 cut(s) 288, 585, 755, 903, 921
TasI AATT 9 cut(s) 93, 197, 565, 608, 763, 861, 949, 1039, 1218
TatI WGTACW 2 cut(s) 916, 1164
TfiI GAWTC 3 cut(s) 239, 928, 1084
Tru1I TTAA 2 cut(s) 434, 678
Tru9I TTAA 2 cut(s) 434, 678
TscAI CASTG 3 cut(s) 58, 405, 1029
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 5 cut(s) 235, 351, 630, 677, 1184
TspRI CASTG 3 cut(s) 58, 405, 1029
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 4 cut(s) 93, 949, 1039, 1218
XceI RCATGY 5 cut(s) 175, 894, 943, 1165, 1186
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 2 cut(s) 668, 741
XspI CTAG 4 cut(s) 20, 629, 687, 801
ZrmI AGTACT 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.