Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

8975164 .. 8976115

Gene Structure 952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG078600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGAACTGGAGAGCATTCTAGGATATCTGGAGAACAAGACCATCTTAATTACTGGAGCTACTGGCTTTGTAGGAAAAGGAAAAGAGTTGTTCAGGATTTTAAGGGAGAAATGGGGCACAAGTTTTGATTCCTTCATATCAGAAAAGATTGTTGCTCTCTCAGGAGACGTAACTTTTAAAGACCTGGGAGTGAAGGAATTCAAAATAAGAGAAGAAATGTGCAACGCAGTACAAATTATAATTAATTCTGCAGCTAACACCAAGTGGGATGAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

92

Amino Acids

10.39

Weight (kDa)

5.47

Isoelectric Point (pI)

15.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	43 - 92	7.3e-08	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	264
AfaI	GTAC	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	59, 254
AluI	AGCT	2 cut(s)	59, 254
Alw26I	GTCTC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	197
AseI	ATTAAT	1 cut(s)	243
Asp700I	GAANNNNTTC	1 cut(s)	197
BaeGI	GKGCMC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	1 cut(s)	50
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	1 cut(s)	20
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	185
BpmI	CTGGAG	3 cut(s)	29, 50, 75
BsaJI	CCNNGG	1 cut(s)	184
Bse1I	ACTGG	3 cut(s)	12, 58, 67
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	3 cut(s)	12, 58, 67
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	159
BsmBI	CGTCTC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	173
BspMAI	CTGCAG	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	12, 58, 67
BssECI	CCNNGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	230
CviJI	RGCY	3 cut(s)	59, 66, 254
CviKI_1	RGCY	3 cut(s)	59, 66, 254
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	160
DraI	TTTAAA	1 cut(s)	178
DraIII	CACNNNGTG	1 cut(s)	264
Eco32I	GATATC	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	159
FaiI	YATR	2 cut(s)	137, 239
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	20
GluI	GCNGC	1 cut(s)	252
GsuI	CTGGAG	3 cut(s)	29, 50, 75
HinfI	GANTC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	3 cut(s)	29, 94, 162
HpyAV	CCTTC	2 cut(s)	142, 187
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	222, 251
HpyF3I	CTNAG	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	14, 39, 48, 79, 147, 170, 197
Lsp1109I	GCAGC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	5 cut(s)	48, 197, 234, 240, 244
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	4 cut(s)	47, 101, 177, 243
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	185
PctI	GAATGC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	253
PshBI	ATTAAT	1 cut(s)	243
PsiI	TTATAA	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PstI	CTGCAG	1 cut(s)	253
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SaqAI	TTAA	4 cut(s)	47, 101, 177, 243
SatI	GCNGC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	5 cut(s)	61, 171, 186, 256, 278
SfcI	CTRYAG	1 cut(s)	249
Sse9I	AATT	5 cut(s)	48, 197, 234, 240, 244
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	183
TaiI	ACGT	1 cut(s)	171
TasI	AATT	5 cut(s)	48, 197, 234, 240, 244
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	4 cut(s)	47, 101, 177, 243
Tru9I	TTAA	4 cut(s)	47, 101, 177, 243
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.