Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Reverse (-)

12073036 .. 12078616

Gene Structure 5581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTTGTATGACGTTGCACTGGAAGTGAATACATTTGGAGTTTTGAATGTGTTAGACTTTGCAAAGAAATGCTTCAATCTGGAGATGGTTGTTCACGTGTCAACAGCTTATGTGTCTGGTGATAGGGCGGGGCTGATACTAGAGGACTCATCTTCAATGGATGAGATGGCAAGACAAACTACTCATGATGTTGACTTGAAAGAACATGAAAAGAAGATGGTGGAGCGCAAATTAAAAGAACTACAAGCACAGCACGCTTCTGAAGAAGTTATTACAAATACAATGAAAGACTTTGGCACTGCAAGGGCTAAGTTGTATGGATGGCCATATACCTATCTGTTTACAAAGGTAATGGGAGAAATGTATCTAAGACGCTTGAGAGGTAACCTATCTCTTGCTATTATACGTCCAACTCTGATTACCAGCACTTACAAGGAGCCATTTCCAGGCTGGATTGAAGGTTTCAGATCCTATGATAGCCTAATTGGTAGTTATTGGAAAGGGAAGCTCACATGTGTACCTGTCGATCCTATGTCAGTAACAGATATGATTCCGGTTGACATGGTGGTAAATTCAATTATTACAGCAATGGTAGTCAATGCAAATAAATCTCGTGAAATTATTTACCATGTTGGAACCTCATTACGAAATCCCCTTAAATTCTCTGATTTTCACAAATTTATGTTCCGATACTGCACAAAAAATCCATGGCTTTACAATGATGGAAGGCTTATCAAGGTTGGCAAGTTAAAAATGGTGAGGACTATGACCGCTTTTCGCTTGTACATGCAACCATTGCAGGTTTGGATTTTCTTTTCATTCTCCTGTTGTTTTTGTTTTGTTTTTTTTTTGTTTTTAGCCACTGTTTCAATACTTGTTATCCTTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

296

Amino Acids

34.21

Weight (kDa)

9.0

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	3 - 193	5.3e-35	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	790
AciI	CCGC	2 cut(s)	128, 771
AclWI	GGATC	2 cut(s)	462, 521
AcoI	YGGCCR	1 cut(s)	323
AcsI	RAATTY	3 cut(s)	571, 659, 677
AcuI	CTGAAG	1 cut(s)	282
AcvI	CACGTG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	519, 785
AfiI	CCNNNNNNNGG	1 cut(s)	446
AflIII	ACRYGT	2 cut(s)	96, 512
AgsI	TTSAA	7 cut(s)	46, 76, 156, 199, 458, 576, 870
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	2 cut(s)	107, 508
AluI	AGCT	2 cut(s)	107, 508
AlwI	GGATC	2 cut(s)	462, 521
AoxI	GGCC	1 cut(s)	323
ApoI	RAATTY	3 cut(s)	571, 659, 677
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	131, 769
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BalI	TGGCCA	1 cut(s)	325
BauI	CACGAG	1 cut(s)	612
BbrPI	CACGTG	1 cut(s)	97
BccI	CCATC	5 cut(s)	79, 160, 211, 315, 716
BciT130I	CCWGG	1 cut(s)	447
BfaI	CTAG	1 cut(s)	140
BfuAI	ACCTGC	1 cut(s)	790
Bme1390I	CCNGG	1 cut(s)	447
BmiI	GGNNCC	2 cut(s)	438, 637
BmrFI	CCNGG	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	101
BpuEI	CTTGAG	1 cut(s)	397
BsaAI	YACGTR	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	707
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	2 cut(s)	594, 794
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	707
BseGI	GGATG	2 cut(s)	166, 326
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	2 cut(s)	594, 794
BseNI	ACTGG	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	679
BshFI	GGCC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	554
BslI	CCNNNNNNNGG	1 cut(s)	446
BsnI	GGCC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	783
Bsp143I	GATC	2 cut(s)	467, 526
Bsp19I	CCATGG	1 cut(s)	707
BspACI	CCGC	2 cut(s)	128, 771
BspANI	GGCC	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	438, 637
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	2 cut(s)	462, 521
BsrDI	GCAATG	2 cut(s)	594, 794
BsrGI	TGTACA	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	707
BssMI	GATC	2 cut(s)	467, 526
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	1 cut(s)	707
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	865
BstAPI	GCANNNNNTGC	1 cut(s)	796
BstAUI	TGTACA	1 cut(s)	783
BstBAI	YACGTR	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	309, 368
BstDSI	CCRYGG	1 cut(s)	707
BstEII	GGTNACC	1 cut(s)	383
BstF5I	GGATG	2 cut(s)	166, 326
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	470, 529
BstMBI	GATC	2 cut(s)	467, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 796
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	516, 790
BstPI	GGTNACC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	1 cut(s)	325
BtgI	CCRYGG	1 cut(s)	707
BtsCI	GGATG	2 cut(s)	166, 326
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	3 cut(s)	17, 297, 861
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	1 cut(s)	255
CciI	TCATGA	1 cut(s)	184
CfoI	GCGC	1 cut(s)	228
CseI	GACGC	1 cut(s)	381
Csp6I	GTAC	2 cut(s)	518, 784
CviAII	CATG	7 cut(s)	185, 206, 513, 562, 629, 708, 787
CviQI	GTAC	2 cut(s)	518, 784
DdeI	CTNAG	2 cut(s)	309, 368
DpnI	GATC	2 cut(s)	469, 528
DpnII	GATC	2 cut(s)	467, 526
EaeI	YGGCCR	1 cut(s)	323
Eco130I	CCWWGG	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	282
Eco72I	CACGTG	1 cut(s)	97
Eco91I	GGTNACC	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	707
FaeI	CATG	7 cut(s)	188, 209, 516, 565, 632, 711, 790
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FatI	CATG	7 cut(s)	184, 205, 512, 561, 628, 707, 786
FauI	CCCGC	1 cut(s)	121
FokI	GGATG	2 cut(s)	173, 333
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	7 cut(s)	188, 209, 516, 565, 632, 711, 790
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	3 cut(s)	102, 193, 559
HindII	GTYRAC	3 cut(s)	102, 193, 559
HinfI	GANTC	2 cut(s)	146, 550
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	2 cut(s)	131, 769
Hpy166II	GTNNAC	6 cut(s)	94, 102, 193, 342, 518, 559
Hpy188I	TCNGA	5 cut(s)	262, 417, 467, 667, 689
Hpy188III	TCNNGA	3 cut(s)	80, 185, 614
Hpy8I	GTNNAC	6 cut(s)	94, 102, 193, 342, 518, 559
HpyAV	CCTTC	2 cut(s)	452, 720
HpyCH4III	ACNGT	1 cut(s)	865
HpyCH4IV	ACGT	3 cut(s)	12, 96, 406
HpyCH4V	TGCA	7 cut(s)	17, 62, 302, 602, 696, 790, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 796
HpyF3I	CTNAG	2 cut(s)	309, 368
HpySE526I	ACGT	3 cut(s)	12, 96, 406
Hsp92II	CATG	7 cut(s)	188, 209, 516, 565, 632, 711, 790
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	467, 526
LmnI	GCTCC	2 cut(s)	223, 436
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	3 cut(s)	12, 96, 406
MaeIII	GTNAC	2 cut(s)	383, 538
MalI	GATC	2 cut(s)	469, 528
MboI	GATC	2 cut(s)	467, 526
MboII	GAAGA	3 cut(s)	144, 226, 275
MflI	RGATCY	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	7 cut(s)	230, 483, 571, 576, 618, 659, 677
MluNI	TGGCCA	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	2 cut(s)	434, 613
MnlI	CCTC	4 cut(s)	136, 374, 649, 753
Mox20I	TGGCCA	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	3 cut(s)	233, 657, 749
Msp20I	TGGCCA	1 cut(s)	325
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
MwoI	GCNNNNNNNGC	2 cut(s)	254, 796
NcoI	CCATGG	1 cut(s)	707
NdeII	GATC	2 cut(s)	467, 526
NlaIII	CATG	7 cut(s)	188, 209, 516, 565, 632, 711, 790
NlaIV	GGNNCC	2 cut(s)	438, 637
NspI	RCATGY	2 cut(s)	516, 790
PagI	TCATGA	1 cut(s)	184
PciI	ACATGT	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	550
PleI	GAGTC	1 cut(s)	140
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	97
PscI	ACATGT	1 cut(s)	512
Psp6I	CCWGG	1 cut(s)	445
PspCI	CACGTG	1 cut(s)	97
PspEI	GGTNACC	1 cut(s)	383
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	438, 637
PsuI	RGATCY	1 cut(s)	467
RsaI	GTAC	2 cut(s)	519, 785
RsaNI	GTAC	2 cut(s)	518, 784
SaqAI	TTAA	3 cut(s)	233, 657, 749
Sau3AI	GATC	2 cut(s)	467, 526
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	7 cut(s)	230, 483, 571, 576, 618, 659, 677
SsiI	CCGC	2 cut(s)	128, 771
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	707
TaaI	ACNGT	1 cut(s)	865
TaiI	ACGT	3 cut(s)	15, 99, 409
TaqI	TCGA	1 cut(s)	525
TasI	AATT	7 cut(s)	230, 483, 571, 576, 618, 659, 677
TatI	WGTACW	1 cut(s)	783
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	3 cut(s)	233, 657, 749
Tru9I	TTAA	3 cut(s)	233, 657, 749
TscAI	CASTG	3 cut(s)	24, 304, 868
TspDTI	ATGAA	3 cut(s)	222, 299, 807
TspRI	CASTG	3 cut(s)	24, 304, 868
XapI	RAATTY	3 cut(s)	571, 659, 677
XceI	RCATGY	2 cut(s)	516, 790
XcmI	CCANNNNNNNNNTGG	2 cut(s)	447, 801
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.