Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

77455917 .. 77463064

Gene Structure 7148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG545600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGTGGTAAATTCAATAATAGTAGCCATTGTGGTGAATGCAAATAAGTCATCTGGCACCATTTACCATGTGGGAAGCTCACTAAGAAATCCTATAAAACTCTACGATATATGTGGTTTTATGTTCAAATACTTCACCAAATATCCATGGGTTAATAAGGATGAAAAGTCTATCGTAGTGAAGAAGATTTCAATATTCAAGACTAGGTCTACTTTTCATATGTACATGAAAATTCGCTACTCACTTCCTTTGAAGGGATTAAAGTTGGTGAACAAAGCATCTTGCCAATATTTTCAAGATGTATATGTCAAGTATAACCAGAAATTCAAATTGGCGATGCGCATGGTGGAGCTATACCGTCCCTATATGTTATTCAAGGGCATCTTTGACGACACCAATACAGAGAAGTTGAAGGAGTGTTTTGTTGAAGCAGAACATTTTAACTTCGATGCGACATGCATTGATTGGGAAGGTTACATCATGCACACTCAAGTTCCTGGCTTCCTAAAACACGGCCTGATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

175

Amino Acids

20.61

Weight (kDa)

9.5

Isoelectric Point (pI)

20.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sterile	PF03015	80 - 171	2e-12	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	56
AccI	GTMKAC	1 cut(s)	209
AcsI	RAATTY	3 cut(s)	10, 231, 323
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	2 cut(s)	78, 352
AluI	AGCT	2 cut(s)	78, 352
AoxI	GGCC	1 cut(s)	514
ApoI	RAATTY	3 cut(s)	10, 231, 323
AspLEI	GCGC	1 cut(s)	342
AsuHPI	GGTGA	3 cut(s)	46, 127, 280
BanI	GGYRCC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	498
BclI	TGATCA	1 cut(s)	519
BfaI	CTAG	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	498
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	4 cut(s)	287, 327, 390, 439
BpuEI	CTTGAG	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	254
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	516
BshNI	GGYRCC	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	345
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	516
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	519
Bsp19I	CCATGG	1 cut(s)	146
BspANI	GGCC	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	58
BspT107I	GGYRCC	1 cut(s)	56
BsrGI	TGTACA	1 cut(s)	222
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	1 cut(s)	359
BstAUI	TGTACA	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	83
BstDSI	CCRYGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	342
BstKTI	GATC	1 cut(s)	522
BstMBI	GATC	1 cut(s)	519
BstNI	CCWGG	1 cut(s)	498
BstNSI	RCATGY	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	496
BsuRI	GGCC	1 cut(s)	516
BtgI	CCRYGG	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	166
CfoI	GCGC	1 cut(s)	342
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	6 cut(s)	68, 147, 226, 343, 456, 481
CviJI	RGCY	5 cut(s)	26, 78, 352, 501, 516
CviKI_1	RGCY	5 cut(s)	26, 78, 352, 501, 516
CviQI	GTAC	1 cut(s)	223
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	1 cut(s)	521
DpnII	GATC	1 cut(s)	519
Eco130I	CCWWGG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	146
EcoT22I	ATGCAT	1 cut(s)	461
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	6 cut(s)	71, 150, 229, 346, 459, 484
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	6 cut(s)	67, 146, 225, 342, 455, 480
FauNDI	CATATG	1 cut(s)	219
FbaI	TGATCA	1 cut(s)	519
FblI	GTMKAC	1 cut(s)	209
FokI	GGATG	1 cut(s)	173
FspAI	RTGCGCAY	1 cut(s)	341
FspBI	CTAG	1 cut(s)	204
FspI	TGCGCA	1 cut(s)	341
GlaI	GCGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	516
HhaI	GCGC	1 cut(s)	342
Hin1II	CATG	6 cut(s)	71, 150, 229, 346, 459, 484
Hin6I	GCGC	1 cut(s)	340
HinP1I	GCGC	1 cut(s)	340
HphI	GGTGA	3 cut(s)	46, 127, 280
Hpy166II	GTNNAC	2 cut(s)	210, 271
Hpy188III	TCNNGA	2 cut(s)	199, 296
Hpy8I	GTNNAC	2 cut(s)	210, 271
HpyAV	CCTTC	3 cut(s)	247, 406, 464
HpyCH4III	ACNGT	1 cut(s)	359
HpyCH4V	TGCA	3 cut(s)	41, 459, 484
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	6 cut(s)	71, 150, 229, 346, 459, 484
HspAI	GCGC	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	4 cut(s)	39, 332, 483, 510
LweI	GCATC	4 cut(s)	287, 327, 390, 439
MaeI	CTAG	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	1 cut(s)	521
MboI	GATC	1 cut(s)	519
MboII	GAAGA	2 cut(s)	193, 196
MluCI	AATT	4 cut(s)	10, 231, 323, 329
Mph1103I	ATGCAT	1 cut(s)	461
MseI	TTAA	3 cut(s)	153, 260, 441
MslI	CAYNNNNRTG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	43
MvaI	CCWGG	1 cut(s)	498
NcoI	CCATGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	219
NdeII	GATC	1 cut(s)	519
NlaIII	CATG	6 cut(s)	71, 150, 229, 346, 459, 484
NlaIV	GGNNCC	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	341
NsiI	ATGCAT	1 cut(s)	461
NspI	RCATGY	1 cut(s)	459
PctI	GAATGC	1 cut(s)	43
PflFI	GACNNNGTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	496
PspGI	CCWGG	1 cut(s)	496
PspN4I	GGNNCC	1 cut(s)	58
PsyI	GACNNNGTC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	32
SaqAI	TTAA	3 cut(s)	153, 260, 441
Sau3AI	GATC	1 cut(s)	519
ScrFI	CCNGG	1 cut(s)	498
SetI	ASST	4 cut(s)	80, 209, 354, 475
SfaNI	GCATC	4 cut(s)	287, 327, 390, 439
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	4 cut(s)	10, 231, 323, 329
SspI	AATATT	2 cut(s)	195, 290
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	359
TaqI	TCGA	1 cut(s)	447
TasI	AATT	4 cut(s)	10, 231, 323, 329
TatI	WGTACW	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	153, 260, 441
Tru9I	TTAA	3 cut(s)	153, 260, 441
TspDTI	ATGAA	3 cut(s)	177, 206, 242
Tth111I	GACNNNGTC	1 cut(s)	205
XapI	RAATTY	3 cut(s)	10, 231, 323
XceI	RCATGY	1 cut(s)	459
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.