Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8020118.1

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 455

Gene Structure 446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8020118.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgtgcaggtatgacgttgcactggaagtgaatacatttggagttttgaatgtgttagactttgcaaagaaatgcttcaatctggagatggttgttcacgtgtcaacagcttatgtgtctggtgatagggcggggctgatactagaggactcatcttcaatggatgagatggcaagacaaactactcatgatgttgacttgaaagaacatgaaaagaagatggtggagcgcaaattaaaagaactacaagcacagcacgcttctgaagaagttattacaaatacaatgaaagactttggcactgcaaggttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

104

Amino Acids

11.84

Weight (kDa)

5.29

Isoelectric Point (pI)

25.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	49, 79, 159, 202
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	134
BbrPI	CACGTG	1 cut(s)	100
BccI	CCATC	3 cut(s)	82, 163, 214
BfaI	CTAG	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	169
BseNI	ACTGG	1 cut(s)	27
BsgI	GTGCAG	1 cut(s)	25
BspACI	CCGC	1 cut(s)	131
BspHI	TCATGA	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	169
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	20, 300
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	187
CfoI	GCGC	1 cut(s)	231
CviAII	CATG	2 cut(s)	188, 209
CviJI	RGCY	2 cut(s)	110, 136
CviKI_1	RGCY	2 cut(s)	110, 136
Eco57I	CTGAAG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	100
FaeI	CATG	2 cut(s)	191, 212
FaiI	YATR	4 cut(s)	12, 114, 189, 210
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	2 cut(s)	187, 208
FauI	CCCGC	1 cut(s)	124
FokI	GGATG	1 cut(s)	176
FspBI	CTAG	1 cut(s)	143
GlaI	GCGC	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	104
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	191, 212
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	2 cut(s)	105, 196
HindII	GTYRAC	2 cut(s)	105, 196
HinfI	GANTC	1 cut(s)	149
HphI	GGTGA	1 cut(s)	134
Hpy166II	GTNNAC	3 cut(s)	97, 105, 196
Hpy188I	TCNGA	1 cut(s)	265
Hpy188III	TCNNGA	2 cut(s)	83, 188
Hpy8I	GTNNAC	3 cut(s)	97, 105, 196
HpyCH4IV	ACGT	2 cut(s)	15, 99
HpyCH4V	TGCA	4 cut(s)	6, 20, 65, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	257
HpySE526I	ACGT	2 cut(s)	15, 99
Hsp92II	CATG	2 cut(s)	191, 212
HspAI	GCGC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	8, 68, 105
MaeI	CTAG	1 cut(s)	143
MaeII	ACGT	2 cut(s)	15, 99
MboII	GAAGA	3 cut(s)	147, 229, 278
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	1 cut(s)	139
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	257
NlaIII	CATG	2 cut(s)	191, 212
PagI	TCATGA	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	143
PmaCI	CACGTG	1 cut(s)	100
PmlI	CACGTG	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	143
Ppu21I	YACGTR	1 cut(s)	100
PspCI	CACGTG	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	236
SchI	GAGTC	1 cut(s)	143
SetI	ASST	5 cut(s)	11, 18, 102, 112, 311
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	143
TaiI	ACGT	2 cut(s)	18, 102
TasI	AATT	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	2 cut(s)	27, 307
TspDTI	ATGAA	2 cut(s)	225, 302
TspRI	CASTG	2 cut(s)	27, 307
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.