Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Reverse (-)

15873248 .. 15902785

Gene Structure 29538 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG182900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCGCAATGAGATTATAGAGAAAGAGTTATTTAGGGTTCTTAGAGAAAAATGGGGCACAGATTTTGAATCCTTCATTTCAGAAAAAGTAGTTGCTATTCCGGGAGATGTGGCTTCTGCAGAAATAGGAGTGAAAGGATTTGAATTGAGGGAACGTATGTGCAATGAAATACAAATTATACTTCATTTTGCAGCAACCGTGGATTTTAATGACAGGTATGATATTGCTTTGGATGTGAATACATTTGGGGTTCTGCATGTGTTGAGCTTTGCGAAGAAGCGTTTGAAACTAGAAATGCTTGTTCATATATCAACTGCTTATGTGGGCGTCAGAAGGATTGGGCTTATACCGGAGGACTCCTCTCCAATGGATGAGCTAAGAAAGGAAATCACTAAATCTGACTTGAAAGTACTGGAAAGGAACATGATGGTGGAAAAATTAAATGAACTAAAAGCACAAAATGCTTTAGAAAAAGTTATAAAGAATAAGATGAAGGACTTGGGCGTTACAAGGTTTTTGAGCATTGACTTAACTGTATTAAAGTTCTTGAATAAAGAATTTGACCAATATTTTCAAGAATTATATGCCAACTATAACCGAAAAATCACATTTGCGATGCGGTTGGCTGAGATATACCGGCCATTTACGCTATATAAGGGCATGGTGACTAAAGAAGGAGTCGATGCAACCGAAAAGAATTTGGGTGAAGAAAAGCCTGTGGGAGAGGTAGATGCAGCAGATGACACCAAAGAGAACCCTAGCCTACTAATGAACTTGAAGAAAAGGAACCTGAGGAGAAGGTCAGTTATAAAAATTGCAATTTTTTCAACCGGGCTTGTGCAGGAACCTATCAAATTTGTTTCCCTCGTTACAAAATTGGAGTTTATCTTGACACGCATGCAGACTTTCCATGACAAGTTCAGTCACTGTGATTTGAATTTTGATTCGCGGCAAACTCTTTCAAGTCATGGGAAAGGTGTGATGTGTAAGTGCCAACTGTTTAATATGACTCTTGCTGCTTTAGTGTTGATGCTTTTATCAACTGTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

350

Amino Acids

40.29

Weight (kDa)

8.82

Isoelectric Point (pI)

31.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	3 - 140	1e-22	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	479, 809
Acc16I	TGCGCA	1 cut(s)	5
AccII	CGCG	1 cut(s)	949
AciI	CCGC	2 cut(s)	619, 949
AcoI	YGGCCR	1 cut(s)	638
AcsI	RAATTY	4 cut(s)	557, 697, 854, 937
AcyI	GRCGYC	1 cut(s)	327
AfaI	GTAC	1 cut(s)	411
AluBI	AGCT	2 cut(s)	267, 376
AluI	AGCT	2 cut(s)	267, 376
AlwNI	CAGNNNCTG	1 cut(s)	927
AoxI	GGCC	1 cut(s)	638
ApeKI	GCWGC	3 cut(s)	191, 734, 1016
ApoI	RAATTY	4 cut(s)	557, 697, 854, 937
AspLEI	GCGC	1 cut(s)	6
AsuC2I	CCSGG	2 cut(s)	102, 832
AsuHPI	GGTGA	2 cut(s)	676, 716
AxyI	CCTNAGG	1 cut(s)	791
BaeGI	GKGCMC	1 cut(s)	59
BbvI	GCAGC	3 cut(s)	203, 746, 1003
BccI	CCATC	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	102, 832
BfaI	CTAG	2 cut(s)	290, 759
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	4 cut(s)	192, 735, 950, 1017
BlsI	GCNGC	4 cut(s)	193, 736, 951, 1018
BmcAI	AGTACT	1 cut(s)	411
Bme1390I	CCNGG	2 cut(s)	102, 832
BmiI	GGNNCC	2 cut(s)	788, 846
BmrFI	CCNGG	2 cut(s)	102, 832
BmsI	GCATC	4 cut(s)	606, 673, 721, 1020
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpuMI	CCSGG	2 cut(s)	102, 832
BsaHI	GRCGYC	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	636
Bse1I	ACTGG	1 cut(s)	417
Bse21I	CCTNAGG	1 cut(s)	791
Bse3DI	GCAATG	2 cut(s)	13, 169
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	238, 376
BseMI	GCAATG	2 cut(s)	13, 169
BseMII	CTCAG	2 cut(s)	618, 782
BseNI	ACTGG	1 cut(s)	417
BseRI	GAGGAG	2 cut(s)	349, 808
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	3 cut(s)	203, 746, 1003
BsgI	GTGCAG	1 cut(s)	860
Bsh1236I	CGCG	1 cut(s)	949
BshFI	GGCC	1 cut(s)	640
BsiSI	CCGG	4 cut(s)	101, 350, 637, 831
BsnI	GGCC	1 cut(s)	640
Bsp1286I	GDGCHC	1 cut(s)	59
BspACI	CCGC	2 cut(s)	619, 949
BspANI	GGCC	1 cut(s)	640
BspCNI	CTCAG	2 cut(s)	619, 783
BspFNI	CGCG	1 cut(s)	949
BspLI	GGNNCC	2 cut(s)	788, 846
BspMAI	CTGCAG	1 cut(s)	121
BsrDI	GCAATG	2 cut(s)	13, 169
BsrFI	RCCGGY	1 cut(s)	636
BsrI	ACTGG	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	636
BssECI	CCNNGG	1 cut(s)	198
BssNI	GRCGYC	1 cut(s)	327
Bst4CI	ACNGT	5 cut(s)	199, 535, 929, 999, 1045
BstACI	GRCGYC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	899
BstDEI	CTNAG	4 cut(s)	41, 377, 627, 791
BstDSI	CCRYGG	1 cut(s)	198
BstF5I	GGATG	2 cut(s)	238, 376
BstFNI	CGCG	1 cut(s)	949
BstHHI	GCGC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	2 cut(s)	461, 646
BstNSI	RCATGY	2 cut(s)	260, 901
BstSCI	CCNGG	2 cut(s)	100, 830
BstSFI	CTRYAG	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	59
BstUI	CGCG	1 cut(s)	949
BstV1I	GCAGC	3 cut(s)	203, 746, 1003
Bsu36I	CCTNAGG	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	640
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	238, 376
BtsIMutI	CAGTG	1 cut(s)	925
Cac8I	GCNNGC	1 cut(s)	899
CaiI	CAGNNNCTG	1 cut(s)	927
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	636
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	6 cut(s)	257, 424, 661, 898, 911, 968
CviJI	RGCY	9 cut(s)	113, 267, 343, 376, 626, 640, 715, 762, 835
CviKI_1	RGCY	9 cut(s)	113, 267, 343, 376, 626, 640, 715, 762, 835
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	4 cut(s)	41, 377, 627, 791
EaeI	YGGCCR	1 cut(s)	638
Eco81I	CCTNAGG	1 cut(s)	791
FaeI	CATG	6 cut(s)	260, 427, 664, 901, 914, 971
FatI	CATG	6 cut(s)	256, 423, 660, 897, 910, 967
Fnu4HI	GCNGC	4 cut(s)	192, 735, 950, 1017
FokI	GGATG	2 cut(s)	245, 383
Fsp4HI	GCNGC	4 cut(s)	192, 735, 950, 1017
FspBI	CTAG	2 cut(s)	290, 759
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	4 cut(s)	192, 735, 950, 1017
HaeIII	GGCC	1 cut(s)	640
HapII	CCGG	4 cut(s)	101, 350, 637, 831
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	6 cut(s)	260, 427, 664, 901, 914, 971
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	5 cut(s)	68, 356, 678, 944, 1009
HpaII	CCGG	4 cut(s)	101, 350, 637, 831
HphI	GGTGA	2 cut(s)	676, 716
Hpy188I	TCNGA	3 cut(s)	82, 332, 400
Hpy188III	TCNNGA	3 cut(s)	547, 575, 889
HpyAV	CCTTC	5 cut(s)	82, 327, 487, 668, 792
HpyCH4III	ACNGT	5 cut(s)	199, 535, 929, 999, 1045
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	9 cut(s)	119, 162, 191, 256, 686, 734, 818, 841, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	461, 646
HpyF3I	CTNAG	4 cut(s)	41, 377, 627, 791
HpySE526I	ACGT	1 cut(s)	154
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	6 cut(s)	260, 427, 664, 901, 914, 971
HspAI	GCGC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	114, 199, 363, 398, 650, 729, 803, 827, 844
Lsp1109I	GCAGC	3 cut(s)	203, 746, 1003
LweI	GCATC	4 cut(s)	606, 673, 721, 1020
MaeI	CTAG	2 cut(s)	290, 759
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	4 cut(s)	505, 664, 868, 923
MboII	GAAGA	3 cut(s)	286, 719, 790
MhlI	GDGCHC	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	350, 687, 1003
MnlI	CCTC	6 cut(s)	141, 346, 370, 718, 786, 875
MseI	TTAA	5 cut(s)	207, 440, 530, 539, 1002
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	4 cut(s)	101, 350, 637, 831
MspR9I	CCNGG	2 cut(s)	102, 832
MvnI	CGCG	1 cut(s)	949
MwoI	GCNNNNNNNGC	2 cut(s)	461, 646
NciI	CCSGG	2 cut(s)	102, 832
NlaIII	CATG	6 cut(s)	260, 427, 664, 901, 914, 971
NlaIV	GGNNCC	2 cut(s)	788, 846
NmuCI	GTSAC	2 cut(s)	664, 923
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	2 cut(s)	260, 901
PaeI	GCATGC	1 cut(s)	901
PcsI	WCGNNNNNNNCGW	1 cut(s)	687
PfeI	GAWTC	2 cut(s)	68, 944
PfoI	TCCNGGA	1 cut(s)	100
PkrI	GCNGC	4 cut(s)	193, 736, 951, 1018
PleI	GAGTC	3 cut(s)	350, 686, 1003
PpsI	GAGTC	3 cut(s)	350, 686, 1003
PsiI	TTATAA	2 cut(s)	479, 809
PspN4I	GGNNCC	2 cut(s)	788, 846
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	927
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	5 cut(s)	207, 440, 530, 539, 1002
SatI	GCNGC	4 cut(s)	192, 735, 950, 1017
ScaI	AGTACT	1 cut(s)	411
SchI	GAGTC	3 cut(s)	350, 687, 1003
ScrFI	CCNGG	2 cut(s)	102, 832
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	4 cut(s)	606, 673, 721, 1020
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	901
SsiI	CCGC	2 cut(s)	619, 949
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	2 cut(s)	290, 759
StyD4I	CCNGG	2 cut(s)	100, 830
TaaI	ACNGT	5 cut(s)	199, 535, 929, 999, 1045
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	681
TatI	WGTACW	1 cut(s)	409
TauI	GCSGC	1 cut(s)	952
TfiI	GAWTC	2 cut(s)	68, 944
Tru1I	TTAA	5 cut(s)	207, 440, 530, 539, 1002
Tru9I	TTAA	5 cut(s)	207, 440, 530, 539, 1002
TscAI	CASTG	1 cut(s)	932
TseFI	GTSAC	2 cut(s)	664, 923
TseI	GCWGC	3 cut(s)	191, 734, 1016
Tsp45I	GTSAC	2 cut(s)	664, 923
TspDTI	ATGAA	7 cut(s)	64, 173, 180, 293, 459, 506, 785
TspRI	CASTG	1 cut(s)	932
XapI	RAATTY	4 cut(s)	557, 697, 854, 937
XceI	RCATGY	2 cut(s)	260, 901
XspI	CTAG	2 cut(s)	290, 759
ZrmI	AGTACT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.