Rh5DG311700

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
39864780 .. 39868058
3279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG311700.1

Sequence Viewer

Length: 1347 bp
ATGGGGTTGGACAGCATACTAGGTTATCTGCAGAATAAGACCATTTTGATCACTGGTGCGACCGGCTTCCTTGGAATGGTCTTTGTGGAGAAAATTCTAAGGGTGCAACCAAATGTGAAGAAGCTCTATCTTCTCGTAAGAGCCTCTGATACCAAGTCAGCAACACATCGCATGCAAGATGAGATTATAGGGAAGGAATTGTTCAGGGTTCTGAGGGAGAAATGGAGGACAGATTTTGATTCTTTCATTTCCGAAAAAGTTGTTGCTCTCCCAGGAGATGTCACTTTCGAGAACCTCGGAGTGAAAGAACCCAGATTGATGGAAGAACTATACAATGAAATACAGATAATATTCAACTCTGCAGCCACCACCAACTTTGACGAAAGATATGATATTTCACTGGCGGTAAATACTTTTGGAGTTCTGCAAGTGTTAAGCTTTGCGAACAAATGTTTCAAACTACAGATACTTCTCCATGTATCAACTGCTTACGTGTGTGGGGAAAGGGCGGGGCTCATACTAGAAGACTCATCTTCAATGGATAAGATGGTAAAGGAGATGGGTAATTTTGATTTTGAAGCAGTGGAAAAGGGCCTTGTGCAGGAGAAATTGAATGAACTAAAAGCAATAGATGCTTCAGAAGAAGTTGTTACGAACACAATGAAGGATTTTGGCATTAAAAGGGCTAGACTATATGGATGGCCAAACACGTATGTGTTCACGAAAGCAATGGGTGAAATATTTCTACAACGCTCGAAAGACAATTTGCCTCTTGTGGTCGTACGTCCAACAATAGTTACTAGCACTTACAAAGAACCATTTTCCGGTTGGATCCAAGGTTTCAGAACTATTGATAGTGTAATTGCTGGTTATTGCAAAGGCAAGCTGACATGCTTGCTTGTCGATCCTGCAAGAGTACTCGATATGGTAAGTCATTCAATCAATTACCAGTATTTTTTTTTTTTGCTTGTAATTGCTGGTTATTGCAAAGGCAAGCTGACATGCTTGCTTGTCGATCCTGCAAGAGTACTCGATATGATTCCTGTTGACATGTTGGTAAATTCAATAATCATAGCAATGGTGGCAAATGCAAATCAGTCTTCTGGAAATATTATTTATCATGTCGGATCCTCACTGAGAAACCCTTTGAATTTCTTTCAAATGCACAACTTTATCTTCCAATACTTCACCAAGAATCCATGGCTTGATAAGGATGGTAAGCCTGTCATTGTTACCAAGGGTACAGTATTGACGACTATGGCTACTTTTCGCATGTACATGAATATTCGCTACATGCTACCTTTGAAGGTTTGTTCAAGCAAGCTACAAATTTATATCATGGAATAA

Protein Analysis

448

Amino Acids

50.87

Weight (kDa)

8.63

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 15 - 171 3.7e-06 NAD dependent epimerase/dehydratase family
NAD_binding_4 PF07993 17 - 311 9.7e-68 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 404, 509
AclWI GGATC 6 cut(s) 826, 839, 899, 1010, 1122, 1135
AcoI YGGCCR 1 cut(s) 701
AcsI RAATTY 4 cut(s) 93, 1060, 1150, 1329
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 5 cut(s) 783, 918, 1029, 1243, 1277
AfiI CCNNNNNNNGG 3 cut(s) 76, 601, 824
AflIII ACRYGT 3 cut(s) 492, 708, 1050
AjnI CCWGG 1 cut(s) 271
AleI CACNNNNGTG 1 cut(s) 713
AluBI AGCT 5 cut(s) 124, 438, 886, 997, 1324
AluI AGCT 5 cut(s) 124, 438, 886, 997, 1324
AlwI GGATC 6 cut(s) 826, 839, 899, 1010, 1122, 1135
AoxI GGCC 2 cut(s) 592, 701
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 4 cut(s) 93, 1060, 1150, 1329
Asp700I GAANNNNTTC 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 592
AsuHPI GGTGA 2 cut(s) 746, 1180
BalI TGGCCA 1 cut(s) 703
BamHI GGATCC 2 cut(s) 831, 1127
BanII GRGCYC 1 cut(s) 516
BbsI GAAGAC 2 cut(s) 531, 1092
BbvI GCAGC 1 cut(s) 374
BccI CCATC 5 cut(s) 313, 541, 553, 693, 1208
BciT130I CCWGG 1 cut(s) 273
BclI TGATCA 1 cut(s) 48
BfaI CTAG 4 cut(s) 20, 521, 687, 801
BfmI CTRYAG 3 cut(s) 29, 360, 461
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 2 cut(s) 918, 1029
Bme1390I CCNGG 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 592
BmiI GGNNCC 2 cut(s) 833, 1129
BmrFI CCNGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 622
BpiI GAAGAC 2 cut(s) 531, 1092
BsaAI YACGTR 2 cut(s) 493, 711
BsaJI CCNNGG 6 cut(s) 70, 271, 295, 835, 1199, 1236
BsaWI WCCGGW 1 cut(s) 824
Bsc4I CCNNNNNNNGG 3 cut(s) 76, 601, 824
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 58, 405, 949
Bse3DI GCAATG 2 cut(s) 735, 1083
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 6 cut(s) 70, 271, 295, 835, 1199, 1236
BseGI GGATG 2 cut(s) 704, 1219
BseLI CCNNNNNNNGG 3 cut(s) 76, 601, 824
BseMI GCAATG 2 cut(s) 735, 1083
BseMII CTCAG 2 cut(s) 203, 1127
BseNI ACTGG 3 cut(s) 58, 405, 949
BseXI GCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 620
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 2 cut(s) 594, 703
BsiEI CGRYCG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 63, 825
BsiWI CGTACG 1 cut(s) 781
BslI CCNNNNNNNGG 3 cut(s) 76, 601, 824
BsnI GGCC 2 cut(s) 594, 703
Bsp1286I GDGCHC 1 cut(s) 516
Bsp1407I TGTACA 1 cut(s) 1275
Bsp143I GATC 5 cut(s) 48, 831, 904, 1015, 1127
Bsp19I CCATGG 1 cut(s) 1199
BspACI CCGC 2 cut(s) 404, 509
BspANI GGCC 2 cut(s) 594, 703
BspCNI CTCAG 2 cut(s) 204, 1128
BspLI GGNNCC 2 cut(s) 833, 1129
BspMAI CTGCAG 2 cut(s) 33, 364
BspPI GGATC 6 cut(s) 826, 839, 899, 1010, 1122, 1135
BsrDI GCAATG 2 cut(s) 735, 1083
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 1 cut(s) 1275
BsrI ACTGG 3 cut(s) 58, 405, 949
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 6 cut(s) 70, 271, 295, 835, 1199, 1236
BssMI GATC 5 cut(s) 48, 831, 904, 1015, 1127
BssT1I CCWWGG 4 cut(s) 70, 835, 1199, 1236
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 1246
BstAPI GCANNNNNTGC 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 1275
BstBAI YACGTR 2 cut(s) 493, 711
BstC8I GCNNGC 6 cut(s) 173, 884, 896, 995, 1007, 1322
BstDEI CTNAG 3 cut(s) 98, 212, 1136
BstDSI CCRYGG 1 cut(s) 1199
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 2 cut(s) 704, 1219
BstKTI GATC 5 cut(s) 51, 834, 907, 1018, 1130
BstMBI GATC 5 cut(s) 48, 831, 904, 1015, 1127
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 2 cut(s) 632, 1082
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 6 cut(s) 175, 894, 1005, 1054, 1276, 1297
BstSCI CCNGG 1 cut(s) 271
BstSFI CTRYAG 3 cut(s) 29, 360, 461
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 2 cut(s) 531, 1092
BstX2I RGATCY 2 cut(s) 831, 1127
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 2 cut(s) 831, 1127
BsuRI GGCC 2 cut(s) 594, 703
BtgI CCRYGG 1 cut(s) 1199
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 2 cut(s) 704, 1219
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 4 cut(s) 51, 398, 588, 1133
Cac8I GCNNGC 6 cut(s) 173, 884, 896, 995, 1007, 1322
Cfr10I RCCGGY 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 592
Csp6I GTAC 5 cut(s) 782, 917, 1028, 1242, 1276
CspCI CAANNNNNGTGG 2 cut(s) 358, 393
CviQI GTAC 5 cut(s) 782, 917, 1028, 1242, 1276
DdeI CTNAG 3 cut(s) 98, 212, 1136
DpnI GATC 5 cut(s) 50, 833, 906, 1017, 1129
DpnII GATC 5 cut(s) 48, 831, 904, 1015, 1127
EaeI YGGCCR 1 cut(s) 701
Eco130I CCWWGG 4 cut(s) 70, 835, 1199, 1236
Eco24I GRGCYC 1 cut(s) 516
Eco57I CTGAAG 1 cut(s) 621
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 4 cut(s) 70, 835, 1199, 1236
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 4 cut(s) 70, 835, 1199, 1236
FauI CCCGC 1 cut(s) 502
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 2 cut(s) 711, 1226
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 4 cut(s) 20, 521, 687, 801
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 2 cut(s) 594, 703
HapII CCGG 2 cut(s) 63, 825
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HindIII AAGCTT 1 cut(s) 436
HinfI GANTC 4 cut(s) 239, 527, 1039, 1195
HpaII CCGG 2 cut(s) 63, 825
HphI GGTGA 2 cut(s) 746, 1180
Hpy166II GTNNAC 2 cut(s) 720, 1048
Hpy188I TCNGA 7 cut(s) 148, 213, 253, 299, 640, 845, 1127
Hpy188III TCNNGA 3 cut(s) 289, 721, 1104
Hpy8I GTNNAC 2 cut(s) 720, 1048
HpyAV CCTTC 3 cut(s) 187, 658, 1300
HpyCH4III ACNGT 1 cut(s) 1246
HpyCH4IV ACGT 3 cut(s) 492, 710, 784
HpyF10VI GCNNNNNNNGC 2 cut(s) 632, 1082
HpyF3I CTNAG 3 cut(s) 98, 212, 1136
HpySE526I ACGT 3 cut(s) 492, 710, 784
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 5 cut(s) 48, 831, 904, 1015, 1127
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 622
MaeI CTAG 4 cut(s) 20, 521, 687, 801
MaeII ACGT 3 cut(s) 492, 710, 784
MaeIII GTNAC 4 cut(s) 280, 649, 796, 1231
MalI GATC 5 cut(s) 50, 833, 906, 1017, 1129
MboI GATC 5 cut(s) 48, 831, 904, 1015, 1127
MboII GAAGA 8 cut(s) 122, 130, 335, 525, 536, 653, 1092, 1168
MflI RGATCY 2 cut(s) 831, 1127
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 703
MluNI TGGCCA 1 cut(s) 703
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 3 cut(s) 809, 812, 1105
MnlI CCTC 6 cut(s) 154, 207, 219, 305, 780, 1141
Mox20I TGGCCA 1 cut(s) 703
MroXI GAANNNNTTC 1 cut(s) 741
MscI TGGCCA 1 cut(s) 703
MseI TTAA 2 cut(s) 434, 678
MslI CAYNNNNRTG 3 cut(s) 713, 1076, 1277
Msp20I TGGCCA 1 cut(s) 703
MspI CCGG 2 cut(s) 63, 825
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 632, 1082
NcoI CCATGG 1 cut(s) 1199
NdeII GATC 5 cut(s) 48, 831, 904, 1015, 1127
NlaIV GGNNCC 2 cut(s) 833, 1129
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 6 cut(s) 175, 894, 1005, 1054, 1276, 1297
OliI CACNNNNGTG 1 cut(s) 713
PaeI GCATGC 1 cut(s) 175
PciI ACATGT 1 cut(s) 1050
PdmI GAANNNNTTC 1 cut(s) 741
PfeI GAWTC 3 cut(s) 239, 1039, 1195
Pfl23II CGTACG 1 cut(s) 781
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Ppu21I YACGTR 2 cut(s) 493, 711
PscI ACATGT 1 cut(s) 1050
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspLI CGTACG 1 cut(s) 781
PspN4I GGNNCC 2 cut(s) 833, 1129
PspPI GGNCC 1 cut(s) 592
PstI CTGCAG 2 cut(s) 33, 364
PsuI RGATCY 2 cut(s) 831, 1127
RsaI GTAC 5 cut(s) 783, 918, 1029, 1243, 1277
RsaNI GTAC 5 cut(s) 782, 917, 1028, 1242, 1276
RseI CAYNNNNRTG 3 cut(s) 713, 1076, 1277
SaqAI TTAA 2 cut(s) 434, 678
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 5 cut(s) 48, 831, 904, 1015, 1127
Sau96I GGNCC 1 cut(s) 592
ScaI AGTACT 2 cut(s) 918, 1029
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 516
SfaNI GCATC 1 cut(s) 622
SfcI CTRYAG 3 cut(s) 29, 360, 461
SmiMI CAYNNNNRTG 3 cut(s) 713, 1076, 1277
SphI GCATGC 1 cut(s) 175
SsiI CCGC 2 cut(s) 404, 509
SspI AATATT 4 cut(s) 351, 741, 1111, 1285
SspMI CTAG 4 cut(s) 20, 521, 687, 801
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 4 cut(s) 70, 835, 1199, 1236
TaaI ACNGT 1 cut(s) 1246
TaiI ACGT 3 cut(s) 495, 713, 787
TaqI TCGA 6 cut(s) 288, 755, 903, 921, 1014, 1032
TatI WGTACW 3 cut(s) 916, 1027, 1275
TfiI GAWTC 3 cut(s) 239, 1039, 1195
Tru1I TTAA 2 cut(s) 434, 678
Tru9I TTAA 2 cut(s) 434, 678
TscAI CASTG 4 cut(s) 58, 405, 588, 1140
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 5 cut(s) 235, 351, 630, 677, 1295
TspRI CASTG 4 cut(s) 58, 405, 588, 1140
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 4 cut(s) 93, 1060, 1150, 1329
XceI RCATGY 6 cut(s) 175, 894, 1005, 1054, 1276, 1297
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmnI GAANNNNTTC 1 cut(s) 741
XspI CTAG 4 cut(s) 20, 521, 687, 801
ZrmI AGTACT 2 cut(s) 918, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.