Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Reverse (-)

53974853 .. 53981469

Gene Structure 6617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20653

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGATCCTACCTCAGTGTTAGATATGATTCCAGTTGACATGCTAGTAAATTCAATAATTACAGCAATCGTAATGAATGGTAATAAATCTTCTGGAATCATCTACCATGTGGGGACCTCATTAAGAAACCCTATAAATATGTCCGAGATGATGAATTTTTTGTTCCAATACTGCACCACAAATCCACTGCTTCATAAGGATGGAAGCCCTATCAAGATTGACAGGCTGAAAATGTTCAAGACTATGGACACTTTTCGCTTCTACATGCAAATTCGCTTCATGCTACCATTAGAGGTAGTGAAGCTCCTAAATAAAGAATTTGACCAGTATTTCAGAGATGTGTACGTTAGCCATAATCGGAAGCTCACATCGGTGATGCGGTTAGCTGAGCTATATGAACCCTATTTGCTATTCAAGGCAATCTTTGACGACACCAATTCGGAGGAGTTGAGAAGGATGGCAAGTAAGAAATACACAGATGCCGAAATTTTCAATTTTGATCCAAAATGCATTAATTGGGAAGACTACGTTATGCGTACTCACATCCCTGGCCTCTGGAAAAACGTTATGACCAAGAAGAGTCACAGCCGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

198

Amino Acids

23.44

Weight (kDa)

8.97

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sterile	PF03015	94 - 190	2.4e-15	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	379
AclI	AACGTT	1 cut(s)	564
AclWI	GGATC	2 cut(s)	12, 494
AcsI	RAATTY	5 cut(s)	49, 154, 270, 317, 486
AfaI	GTAC	2 cut(s)	344, 538
AgsI	TTSAA	4 cut(s)	54, 238, 415, 493
AjnI	CCWGG	1 cut(s)	547
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	4 cut(s)	304, 364, 386, 391
AluI	AGCT	4 cut(s)	304, 364, 386, 391
AlwI	GGATC	2 cut(s)	12, 494
AoxI	GGCC	1 cut(s)	550
ApoI	RAATTY	5 cut(s)	49, 154, 270, 317, 486
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	4
BarI	GAAGNNNNNNTAC	2 cut(s)	73, 105
BbsI	GAAGAC	1 cut(s)	528
BccI	CCATC	2 cut(s)	194, 451
BciT130I	CCWGG	1 cut(s)	549
BfaI	CTAG	1 cut(s)	44
BlpI	GCTNAGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	549
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	6, 115
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	2 cut(s)	366, 469
BpiI	GAAGAC	1 cut(s)	528
Bpu1102I	GCTNAGC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	547
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	2 cut(s)	32, 325
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	547
BseGI	GGATG	3 cut(s)	205, 462, 543
BseMII	CTCAG	2 cut(s)	27, 378
BseNI	ACTGG	2 cut(s)	32, 325
BseRI	GAGGAG	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	589
BslFI	GGGAC	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	127
BsnI	GGCC	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	4, 499
Bsp1720I	GCTNAGC	1 cut(s)	387
BspACI	CCGC	1 cut(s)	379
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	2 cut(s)	26, 379
BspLI	GGNNCC	2 cut(s)	6, 115
BspPI	GGATC	2 cut(s)	12, 494
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	32, 325
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	1 cut(s)	547
BssMI	GATC	2 cut(s)	4, 499
Bst2UI	CCWGG	1 cut(s)	549
Bst6I	CTCTTC	1 cut(s)	572
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	2 cut(s)	13, 387
BstF5I	GGATG	3 cut(s)	205, 462, 543
BstKTI	GATC	2 cut(s)	7, 502
BstMBI	GATC	2 cut(s)	4, 499
BstNI	CCWGG	1 cut(s)	549
BstNSI	RCATGY	2 cut(s)	43, 268
BstSCI	CCNGG	1 cut(s)	547
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	552
BtsCI	GGATG	3 cut(s)	205, 462, 543
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	21, 185
Cac8I	GCNNGC	1 cut(s)	590
Cfr10I	RCCGGY	1 cut(s)	588
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	343, 537
CviAII	CATG	4 cut(s)	40, 107, 265, 280
CviQI	GTAC	2 cut(s)	343, 537
DdeI	CTNAG	2 cut(s)	13, 387
DpnI	GATC	2 cut(s)	6, 501
DpnII	GATC	2 cut(s)	4, 499
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
Eco47I	GGWCC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	547
EcoT22I	ATGCAT	1 cut(s)	512
FaeI	CATG	4 cut(s)	43, 110, 268, 283
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FaqI	GGGAC	1 cut(s)	127
FatI	CATG	4 cut(s)	39, 106, 264, 279
FokI	GGATG	3 cut(s)	212, 469, 530
FspBI	CTAG	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	552
HapII	CCGG	1 cut(s)	589
Hin1II	CATG	4 cut(s)	43, 110, 268, 283
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	3 cut(s)	28, 96, 580
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	2 cut(s)	37, 343
Hpy188I	TCNGA	4 cut(s)	145, 335, 360, 442
Hpy188III	TCNNGA	4 cut(s)	93, 214, 238, 556
Hpy8I	GTNNAC	2 cut(s)	37, 343
HpyAV	CCTTC	1 cut(s)	447
HpyCH4IV	ACGT	3 cut(s)	345, 528, 564
HpyCH4V	TGCA	3 cut(s)	174, 268, 510
HpyF3I	CTNAG	2 cut(s)	13, 387
HpySE526I	ACGT	3 cut(s)	345, 528, 564
Hsp92II	CATG	4 cut(s)	43, 110, 268, 283
KroI	GCCGGC	1 cut(s)	588
KroNI	GCCGGC	1 cut(s)	590
Kzo9I	GATC	2 cut(s)	4, 499
LmnI	GCTCC	1 cut(s)	309
LpnPI	CCDG	7 cut(s)	45, 78, 208, 338, 534, 541, 561
LweI	GCATC	2 cut(s)	366, 469
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	345, 528, 564
MaeIII	GTNAC	1 cut(s)	581
MalI	GATC	2 cut(s)	6, 501
MboI	GATC	2 cut(s)	4, 499
MboII	GAAGA	3 cut(s)	81, 533, 589
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	9 cut(s)	49, 57, 154, 270, 317, 436, 486, 493, 514
MlyI	GAGTC	1 cut(s)	589
MnlI	CCTC	5 cut(s)	22, 127, 286, 436, 563
Mph1103I	ATGCAT	1 cut(s)	512
MroNI	GCCGGC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	233
MseI	TTAA	2 cut(s)	122, 513
MslI	CAYNNNNRTG	2 cut(s)	198, 371
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	549
NaeI	GCCGGC	1 cut(s)	590
NdeII	GATC	2 cut(s)	4, 499
NgoMIV	GCCGGC	1 cut(s)	588
NlaIII	CATG	4 cut(s)	43, 110, 268, 283
NlaIV	GGNNCC	2 cut(s)	6, 115
NmuCI	GTSAC	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	512
NspI	RCATGY	2 cut(s)	43, 268
OliI	CACNNNNGTG	1 cut(s)	371
PdiI	GCCGGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	28, 96
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PpuMI	RGGWCCY	1 cut(s)	114
PshBI	ATTAAT	1 cut(s)	513
Psp1406I	AACGTT	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PspN4I	GGNNCC	2 cut(s)	6, 115
PspPI	GGNCC	1 cut(s)	114
PspPPI	RGGWCCY	1 cut(s)	114
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	344, 538
RsaNI	GTAC	2 cut(s)	343, 537
RseI	CAYNNNNRTG	2 cut(s)	198, 371
SaqAI	TTAA	2 cut(s)	122, 513
Sau3AI	GATC	2 cut(s)	4, 499
Sau96I	GGNCC	1 cut(s)	114
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	1 cut(s)	549
SfaNI	GCATC	2 cut(s)	366, 469
SinI	GGWCC	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	198, 371
Sse9I	AATT	9 cut(s)	49, 57, 154, 270, 317, 436, 486, 493, 514
SsiI	CCGC	1 cut(s)	379
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	547
TaiI	ACGT	3 cut(s)	348, 531, 567
TasI	AATT	9 cut(s)	49, 57, 154, 270, 317, 436, 486, 493, 514
TfiI	GAWTC	2 cut(s)	28, 96
Tru1I	TTAA	2 cut(s)	122, 513
Tru9I	TTAA	2 cut(s)	122, 513
TscAI	CASTG	2 cut(s)	21, 192
TseFI	GTSAC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	5 cut(s)	89, 167, 182, 268, 411
TspRI	CASTG	2 cut(s)	21, 192
VpaK11BI	GGWCC	1 cut(s)	114
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	5 cut(s)	49, 154, 270, 317, 486
XceI	RCATGY	2 cut(s)	43, 268
XmnI	GAANNNNTTC	1 cut(s)	233
XspI	CTAG	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.