Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Reverse (-)

58243613 .. 58246039

Gene Structure 2427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00208240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGATGAGATGGCAAGAAAAACTACCCATGATGTTGACTTGAAAGAACTTGAAAAGAAGATGGTGGAGCGCAAACTAAAAGAACTACAAGCACAAAATGCTTCCGAAGAAGTTATTACAAATACAATGAAGGATTTTGGCACCTCAAGGTCAAGGATAATGGGAGAAATGTATCTAGGATACTCGAAAGGTAACCTATCTGTTGCTGTTATACGTCCAACTATGATTACCAGCACTTATAAGGAGCCATTTTCTGGCTGGATTGAAGGTTTCAGACTGTATGATAGCCTAATTGGCAGTTATTCGAAAGGGAAGCTTACATGTATACCTGTCGATCCTATGTCAGTAGTTGATATGATTCCGGTTGACATGGTGGTAAATTCAATTATTACAGCAATGGTAGTCAATGCAAATACATCTCGTAAAGTAATTTACCATGTTGGAACCTCATTGCGGAATCCTCTTAAATTCTCTGATTTTAACAAATTTATGTTCCAATACTGCACAAAAAATCCATGGATTAACAATGATGGAAGGCCTATCAAGGTTGGCAAGTTAAAAATGGTTAGAACCATGGCCGCTTTTCACTGCTTTGACGACACCAATTCAGAGGAATTGCGAAAGATCGCAAATTGGAGCTGCATTGATGCAGAAAATTTTAATTTCAATCCAGAATGCATTGACTGGGAAGATTACTATATCCGTATTCACATTCCTGGCCTTGGAAAGAATGTTACTTTCAAACACAGTCAAAGCCGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

254

Amino Acids

29.2

Weight (kDa)

8.69

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	18 - 129	1.9e-16	Male sterility protein
Sterile	PF03015	197 - 243	2e-06	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	140
AccB7I	CCANNNNNTGG	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	325
AciI	CCGC	2 cut(s)	454, 579
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	576
AcsI	RAATTY	4 cut(s)	379, 467, 485, 655
AfiI	CCNNNNNNNGG	3 cut(s)	254, 453, 722
AflIII	ACRYGT	1 cut(s)	320
AgsI	TTSAA	6 cut(s)	43, 53, 266, 384, 667, 742
AjnI	CCWGG	1 cut(s)	715
AluBI	AGCT	2 cut(s)	316, 639
AluI	AGCT	2 cut(s)	316, 639
AlwI	GGATC	1 cut(s)	329
AoxI	GGCC	3 cut(s)	536, 576, 718
ApeKI	GCWGC	1 cut(s)	639
ApoI	RAATTY	4 cut(s)	379, 467, 485, 655
AspLEI	GCGC	1 cut(s)	72
AsuII	TTCGAA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	3 cut(s)	4, 55, 524
BciT130I	CCWGG	1 cut(s)	717
BciVI	GTATCC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	176
BfuI	GTATCC	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	579, 640
BlsI	GCNGC	2 cut(s)	580, 641
Bme1390I	CCNGG	1 cut(s)	717
BmiI	GGNNCC	3 cut(s)	142, 246, 445
BmrFI	CCNGG	1 cut(s)	717
BmrI	ACTGGG	1 cut(s)	694
BmsI	GCATC	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	694
Bpu14I	TTCGAA	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	515, 573, 721
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 453, 722
Bse118I	RCCGGY	1 cut(s)	756
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	402, 449
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	3 cut(s)	515, 573, 721
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	3 cut(s)	254, 453, 722
BseMI	GCAATG	2 cut(s)	402, 449
BseNI	ACTGG	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	626
BsgI	GTGCAG	1 cut(s)	487
BshFI	GGCC	3 cut(s)	538, 578, 720
BshNI	GGYRCC	1 cut(s)	140
BsiSI	CCGG	2 cut(s)	362, 757
BslI	CCNNNNNNNGG	3 cut(s)	254, 453, 722
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	3 cut(s)	538, 578, 720
Bsp119I	TTCGAA	1 cut(s)	305
Bsp143I	GATC	2 cut(s)	334, 624
Bsp19I	CCATGG	2 cut(s)	515, 573
BspACI	CCGC	2 cut(s)	454, 579
BspANI	GGCC	3 cut(s)	538, 578, 720
BspLI	GGNNCC	3 cut(s)	142, 246, 445
BspPI	GGATC	1 cut(s)	329
BspT104I	TTCGAA	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	2 cut(s)	402, 449
BsrFI	RCCGGY	1 cut(s)	756
BsrI	ACTGG	1 cut(s)	689
BssAI	RCCGGY	1 cut(s)	756
BssECI	CCNNGG	3 cut(s)	515, 573, 721
BssMI	GATC	2 cut(s)	334, 624
BssNAI	GTATAC	1 cut(s)	326
BssT1I	CCWWGG	3 cut(s)	515, 573, 721
Bst1107I	GTATAC	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	2 cut(s)	279, 749
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	758
BstDSI	CCRYGG	2 cut(s)	515, 573
BstEII	GGTNACC	1 cut(s)	191
BstF5I	GGATG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	2 cut(s)	337, 627
BstMBI	GATC	2 cut(s)	334, 624
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 294
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	1 cut(s)	324
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	715
BstV1I	GCAGC	1 cut(s)	626
BstZ17I	GTATAC	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	538, 578, 720
BtgI	CCRYGG	2 cut(s)	515, 573
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	586
BtsIMutI	CAGTG	1 cut(s)	586
Cac8I	GCNNGC	1 cut(s)	758
CfoI	GCGC	1 cut(s)	72
Cfr10I	RCCGGY	1 cut(s)	756
CviAII	CATG	6 cut(s)	29, 321, 370, 437, 516, 574
DpnI	GATC	2 cut(s)	336, 626
DpnII	GATC	2 cut(s)	334, 624
EaeI	YGGCCR	1 cut(s)	576
Eco130I	CCWWGG	3 cut(s)	515, 573, 721
Eco147I	AGGCCT	1 cut(s)	538
Eco91I	GGTNACC	1 cut(s)	191
EcoO65I	GGTNACC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	715
EcoT14I	CCWWGG	3 cut(s)	515, 573, 721
EcoT22I	ATGCAT	1 cut(s)	680
ErhI	CCWWGG	3 cut(s)	515, 573, 721
FaeI	CATG	6 cut(s)	32, 324, 373, 440, 519, 577
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	6 cut(s)	28, 320, 369, 436, 515, 573
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	2 cut(s)	579, 640
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	579, 640
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	2 cut(s)	579, 640
HaeIII	GGCC	3 cut(s)	538, 578, 720
HapII	CCGG	2 cut(s)	362, 757
HhaI	GCGC	1 cut(s)	72
Hin1II	CATG	6 cut(s)	32, 324, 373, 440, 519, 577
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	2 cut(s)	37, 367
HindII	GTYRAC	2 cut(s)	37, 367
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	2 cut(s)	358, 457
HpaII	CCGG	2 cut(s)	362, 757
Hpy166II	GTNNAC	3 cut(s)	37, 326, 367
Hpy188I	TCNGA	4 cut(s)	106, 275, 475, 610
Hpy188III	TCNNGA	1 cut(s)	671
Hpy8I	GTNNAC	3 cut(s)	37, 326, 367
HpyAV	CCTTC	3 cut(s)	124, 260, 528
HpyCH4III	ACNGT	2 cut(s)	279, 749
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	5 cut(s)	410, 504, 642, 650, 678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 294
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	6 cut(s)	32, 324, 373, 440, 519, 577
HspAI	GCGC	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	756
KroNI	GCCGGC	1 cut(s)	758
Kzo9I	GATC	2 cut(s)	334, 624
LmnI	GCTCC	3 cut(s)	67, 244, 636
LpnPI	CCDG	9 cut(s)	240, 244, 244, 342, 375, 670, 684, 702, 729
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	1 cut(s)	637
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	2 cut(s)	191, 733
MalI	GATC	2 cut(s)	336, 626
MboI	GATC	2 cut(s)	334, 624
MboII	GAAGA	3 cut(s)	70, 119, 701
MmeI	TCCRAC	2 cut(s)	242, 421
MnlI	CCTC	4 cut(s)	154, 457, 471, 604
Mph1103I	ATGCAT	1 cut(s)	680
MroNI	GCCGGC	1 cut(s)	756
MseI	TTAA	5 cut(s)	465, 480, 522, 557, 660
MspI	CCGG	2 cut(s)	362, 757
MspR9I	CCNGG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	717
MwoI	GCNNNNNNNGC	2 cut(s)	98, 294
NaeI	GCCGGC	1 cut(s)	758
NcoI	CCATGG	2 cut(s)	515, 573
NdeII	GATC	2 cut(s)	334, 624
NgoMIV	GCCGGC	1 cut(s)	756
NlaIII	CATG	6 cut(s)	32, 324, 373, 440, 519, 577
NlaIV	GGNNCC	3 cut(s)	142, 246, 445
NsiI	ATGCAT	1 cut(s)	680
NspI	RCATGY	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	538
PciI	ACATGT	1 cut(s)	320
PctI	GAATGC	1 cut(s)	680
PdiI	GCCGGC	1 cut(s)	758
PfeI	GAWTC	2 cut(s)	358, 457
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	580, 641
PscI	ACATGT	1 cut(s)	320
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	715
PspEI	GGTNACC	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	3 cut(s)	142, 246, 445
SaqAI	TTAA	5 cut(s)	465, 480, 522, 557, 660
SatI	GCNGC	2 cut(s)	579, 640
Sau3AI	GATC	2 cut(s)	334, 624
ScrFI	CCNGG	1 cut(s)	717
SfaNI	GCATC	1 cut(s)	637
SfuI	TTCGAA	1 cut(s)	305
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	2 cut(s)	454, 579
SspMI	CTAG	1 cut(s)	176
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	3 cut(s)	515, 573, 721
TaaI	ACNGT	2 cut(s)	279, 749
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	185, 305, 333
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	358, 457
Tru1I	TTAA	5 cut(s)	465, 480, 522, 557, 660
Tru9I	TTAA	5 cut(s)	465, 480, 522, 557, 660
TscAI	CASTG	1 cut(s)	593
TseI	GCWGC	1 cut(s)	639
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	692
TspRI	CASTG	1 cut(s)	593
Van91I	CCANNNNNTGG	1 cut(s)	254
XapI	RAATTY	4 cut(s)	379, 467, 485, 655
XceI	RCATGY	1 cut(s)	324
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XmiI	GTMKAC	1 cut(s)	325
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.