Rh6CG082900

Catalyzes the reduction of fatty acyl-CoA to fatty alcohols

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
9055515 .. 9058544
3030 bp
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UTR
Exon/CDS
Intron
Rh6CG082900.1

Sequence Viewer

Length: 693 bp
ATGGAACTGGAGAGCATTCTAGGATATCTGGAGAACAAGACCATCTTAATTACTGGAGCTACTGGCTTTGTAGGAAAAGTGTTGGTGGAGAAAATACTAAGAGTTCAACCAAACGTGAAAAAGTTGTATCTTCTTTTAAGAGCTTCCGATGCCAAATGTGCCACACATCGCATGCATAATGAGATCACAGGAAAAGAGTTGTTCAGGATTTTAAGGGAGAAATGGGGCACAAGTTTTGATTCCTTCATATCAGAAAAGATTGTTGCTCTCTCAGGAGACGTAACTTTTAAAGACCTGGGAGTGAAGGAATTCAAAATAAGAGAAGAAATGTGCAACGCAGTACAAATTATAATTAATTCTGCAGCTAACACCAAGTGGGATGAAAGGTATGACGTTGCACTGGAAGTGAATACATTTGGAGTTTTGAATGTGTTAGACTTTGCAAAGAAATGCTTCAATCTGGAGATGGTTGTTCACGTGTCAACAGCTTATGTGTCTGGTGATAGGGCGGGGCTGATACTAGAGGACTCATCTTCAATGGATGAGATGGCAAGACAAACTACTCATGATGTTGACTTGAAAGAACATGAAAAGAAGATGGTGGAGCGCAAATTAAAAGAACTACAAGCACAGCACGCTTCTGAAGAAGTTATTACAAATACAATGAAAGACTTTGGCACTGCAAGGTTTTAG

Protein Analysis

230

Amino Acids

26.11

Weight (kDa)

6.11

Isoelectric Point (pI)

25.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Epimerase PF01370 15 - 182 2.5e-10 NAD dependent epimerase/dehydratase family
3Beta_HSD PF01073 16 - 205 1e-05 3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4 PF07993 17 - 197 8.2e-46 Male sterility protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000227)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 350
AciI CCGC 1 cut(s) 509
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 663
AcvI CACGTG 1 cut(s) 478
AdeI CACNNNGTG 1 cut(s) 375
AfaI GTAC 1 cut(s) 342
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 6 cut(s) 107, 313, 427, 457, 537, 580
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 4 cut(s) 59, 143, 365, 488
AluI AGCT 4 cut(s) 59, 143, 365, 488
Alw26I GTCTC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 308
AseI ATTAAT 1 cut(s) 354
Asp700I GAANNNNTTC 2 cut(s) 308, 452
AspLEI GCGC 1 cut(s) 609
AsuHPI GGTGA 1 cut(s) 512
BaeGI GKGCMC 1 cut(s) 230
BbrPI CACGTG 1 cut(s) 478
BbvI GCAGC 1 cut(s) 374
BccI CCATC 4 cut(s) 50, 460, 541, 592
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 2 cut(s) 20, 521
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 296
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 139
BpmI CTGGAG 4 cut(s) 29, 50, 75, 482
BsaAI YACGTR 1 cut(s) 478
BsaJI CCNNGG 1 cut(s) 295
Bse1I ACTGG 4 cut(s) 12, 58, 67, 405
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 385, 547
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 4 cut(s) 12, 58, 67, 405
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 270
BsmBI CGTCTC 1 cut(s) 270
BsmI GAATGC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 509
BspCNI CTCAG 1 cut(s) 284
BspHI TCATGA 1 cut(s) 565
BspMAI CTGCAG 1 cut(s) 364
BsrI ACTGG 4 cut(s) 12, 58, 67, 405
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 2 cut(s) 173, 636
BstDEI CTNAG 2 cut(s) 98, 271
BstF5I GGATG 2 cut(s) 385, 547
BstHHI GCGC 1 cut(s) 609
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 149, 158, 635
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 360
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 374
BtgZI GCGATG 1 cut(s) 152
BtsCI GGATG 2 cut(s) 385, 547
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 2 cut(s) 398, 678
Cac8I GCNNGC 2 cut(s) 173, 636
CciI TCATGA 1 cut(s) 565
CfoI GCGC 1 cut(s) 609
Csp6I GTAC 1 cut(s) 341
CviAII CATG 3 cut(s) 172, 566, 587
CviJI RGCY 6 cut(s) 59, 66, 143, 365, 488, 514
CviKI_1 RGCY 6 cut(s) 59, 66, 143, 365, 488, 514
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 2 cut(s) 98, 271
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
DraI TTTAAA 1 cut(s) 289
DraIII CACNNNGTG 1 cut(s) 375
Eco32I GATATC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 663
Eco72I CACGTG 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 1 cut(s) 294
EcoRV GATATC 1 cut(s) 26
EcoT22I ATGCAT 1 cut(s) 177
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 3 cut(s) 175, 569, 590
FaiI YATR 8 cut(s) 173, 177, 248, 350, 390, 492, 567, 588
FalI AAGNNNNNCTT 4 cut(s) 29, 61, 437, 469
FatI CATG 3 cut(s) 171, 565, 586
FauI CCCGC 1 cut(s) 502
Fnu4HI GCNGC 1 cut(s) 363
FokI GGATG 2 cut(s) 392, 554
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 20, 521
GlaI GCGC 1 cut(s) 608
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 4 cut(s) 29, 50, 75, 482
HhaI GCGC 1 cut(s) 609
Hin1II CATG 3 cut(s) 175, 569, 590
Hin6I GCGC 1 cut(s) 607
HinP1I GCGC 1 cut(s) 607
HincII GTYRAC 2 cut(s) 483, 574
HindII GTYRAC 2 cut(s) 483, 574
HinfI GANTC 2 cut(s) 239, 527
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 3 cut(s) 475, 483, 574
Hpy188I TCNGA 3 cut(s) 148, 253, 643
Hpy188III TCNNGA 5 cut(s) 29, 205, 273, 461, 566
Hpy8I GTNNAC 3 cut(s) 475, 483, 574
HpyAV CCTTC 2 cut(s) 253, 298
HpyCH4IV ACGT 4 cut(s) 114, 279, 393, 477
HpyCH4V TGCA 6 cut(s) 175, 333, 362, 398, 443, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 158, 635
HpyF3I CTNAG 2 cut(s) 98, 271
HpySE526I ACGT 4 cut(s) 114, 279, 393, 477
Hsp92II CATG 3 cut(s) 175, 569, 590
HspAI GCGC 1 cut(s) 607
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 2 cut(s) 56, 604
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 20, 521
MaeII ACGT 4 cut(s) 114, 279, 393, 477
MaeIII GTNAC 1 cut(s) 280
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 5 cut(s) 122, 335, 525, 607, 656
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 6 cut(s) 48, 308, 345, 351, 355, 611
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 1 cut(s) 517
Mph1103I ATGCAT 1 cut(s) 177
MroXI GAANNNNTTC 2 cut(s) 308, 452
MseI TTAA 6 cut(s) 47, 137, 212, 288, 354, 614
MspR9I CCNGG 1 cut(s) 296
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 149, 158, 635
NdeII GATC 1 cut(s) 183
NlaIII CATG 3 cut(s) 175, 569, 590
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 1 cut(s) 175
PaeI GCATGC 1 cut(s) 175
PagI TCATGA 1 cut(s) 565
PctI GAATGC 1 cut(s) 15
PdmI GAANNNNTTC 2 cut(s) 308, 452
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 1 cut(s) 521
PmaCI CACGTG 1 cut(s) 478
PmlI CACGTG 1 cut(s) 478
PpsI GAGTC 1 cut(s) 521
Ppu21I YACGTR 1 cut(s) 478
PshBI ATTAAT 1 cut(s) 354
PsiI TTATAA 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 294
PspCI CACGTG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 294
PstI CTGCAG 1 cut(s) 364
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
SaqAI TTAA 6 cut(s) 47, 137, 212, 288, 354, 614
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 1 cut(s) 183
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 360
SphI GCATGC 1 cut(s) 175
Sse9I AATT 6 cut(s) 48, 308, 345, 351, 355, 611
SsiI CCGC 1 cut(s) 509
SspMI CTAG 2 cut(s) 20, 521
StyD4I CCNGG 1 cut(s) 294
TaiI ACGT 4 cut(s) 117, 282, 396, 480
TasI AATT 6 cut(s) 48, 308, 345, 351, 355, 611
TatI WGTACW 1 cut(s) 340
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 6 cut(s) 47, 137, 212, 288, 354, 614
Tru9I TTAA 6 cut(s) 47, 137, 212, 288, 354, 614
TscAI CASTG 2 cut(s) 405, 685
TseI GCWGC 1 cut(s) 362
TspDTI ATGAA 4 cut(s) 235, 396, 603, 680
TspRI CASTG 2 cut(s) 405, 685
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 1 cut(s) 308
XceI RCATGY 1 cut(s) 175
XmnI GAANNNNTTC 2 cut(s) 308, 452
XspI CTAG 2 cut(s) 20, 521
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.