Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000227

Physical Location & Seq

Genomic Coordinates Reverse (-)

29127017 .. 29128067

Gene Structure 1051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATTATGTACAGAACATATGATAATCTAATTGGTGGTTACTGGAAAGGGAAGCTCACAGGCATACCTGTCGATCCTATGTCAGTAGTGGATATGATTCCGGTTGACATGGTGGTAAATTCGATAATTACAGCGATGGTCGTTAATGCAAACAAATCTGGCAAAATCATTTACCACCTGGGAACTTCATTGAGAAATCCCTTAACATTTTCTGATTTTAACAACTTTATGTTCCAATACTGCACCAAAAATCCATGGCTTAACAATGATGGAAGCCCAGTCAAGGTTGGAAAGTTGAAAATGTTCAGGAGTATGGACACTTTTCATTTGTACATGCAAATACCATTGCAGGTATTAAAGTTCATGAACAAGGAATTTGACCAATATTTCCAAGACGTATACGTTAACTATAACAGGAAAGTCAAATCAGTGAAACGGTTGGTTGAGCTCTACAGAGCATATTTGCCATTCAAGGGCATCTTTGATGACACCAATGCAGAAGAGTTGCGAAGGATAGCAAGTGAGAACTACACAGATGCAGGCAATTTTAATTTTGATCCAAAGTCCATAGATTGGGAAGACTACTATATGCATACTCACATTCCTGGCTTTGCAAAGCATGTTGTCATCAAACACAGCCAAAGTCGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009507 GO:0009536 GO:0009611 GO:0009628 GO:0009651 GO:0009698 GO:0009699 GO:0009987 GO:0010345 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0046483 GO:0050062 GO:0050896 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072521 GO:0080019 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

217

Amino Acids

25.43

Weight (kDa)

9.1

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sterile	PF03015	114 - 209	7.8e-14	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44550 AT3G44550 AT3G44560 AT3G44560 AT3G44560
fragaria_vesca	FvH4_3g09600 FvH4_3g24560 FvH4_3g24560 FvH4_3g24560 FvH4_3g24570 FvH4_3g24570 FvH4_3g38410 FvH4_3g38410 FvH4_3g38410 FvH4_5g01800 FvH4_7g07480 FvH4_7g07480
malus_domestica	MD02G1239300.v1.1 MD03G1141400.v1.1 MD03G1141600.v1.1 MD03G1141700.v1.1 MD10G1066600.v1.1 MD11G1171600.v1.1
prunus_persica	Prupe.6G126600_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126700_v2.0.a1 Prupe.6G126800_v2.0.a1
pyrus_communis	pycom03g09610 pycom03g09620 pycom03g09650 pycom10g05210 pycom11g13330
rosa_chinensis	RchiOBHm_Chr3g0483921 RchiOBHm_Chr5g0043321 RchiOBHm_Chr5g0044031 RchiOBHm_Chr5g0044071 RchiOBHm_Chr5g0069061 RchiOBHm_Chr5g0069111 RchiOBHm_Chr5g0069131 RchiOBHm_Chr6g0256891 RchiOBHm_Chr6g0256901 RchiOBHm_Chr7g0198821 RchiOBHm_Chr7g0198851 RchiOBHm_Chr7g0198861 RchiOBHm_Chr7g0219381 RchiOBHm_Chr7g0230491
rosa_laevigata	RLG00000001491 RLG00000003837 RLG00000014654 RLG00000014655 RLG00000020958 RLG00000023252 RLG00000028966 RLG00000034179 RLG00000034211 RLG00000034236 RLG00000034238 RLG00000036034 RLG00000036038
rosa_multiflora	Rmu_co8020118.1_g000001 Rmu_sc0000060.1_g000002 Rmu_sc0000060.1_g000026 Rmu_sc0001157.1_g000010 Rmu_sc0001157.1_g000016 Rmu_sc0002252.1_g000009 Rmu_sc0003076.1_g000025 Rmu_sc0008623.1_g000018 Rmu_sc0008623.1_g000021 Rmu_sc0022203.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036940 Rroxscaffold_1G00036990 Rroxscaffold_3G00230110 Rroxscaffold_3G00257340 Rroxscaffold_3G00257380 Rroxscaffold_6G00398020 Rroxscaffold_6G00398040 Rroxscaffold_7G00208240 Rroxscaffold_7G00208260
rosa_rugosa	Rorug01G0059500 Rorug03G0208700 Rorug03G0208700 Rorug03G0208800 Rorug03G0208900 Rorug03G0208900 Rorug04G0119300 Rorug05G0210300 Rorug05G0210300 Rorug05G0395800 Rorug05G0396000 Rorug05G0396100 Rorug05G0396200 Rorug05G0577200 Rorug07G0050100 Rorug07G0050200 Rorug07G0215200
rosa_samantha	Rh1BG061200 Rh2BG536700 Rh2DG545600 Rh3AG257500 Rh3BG294300 Rh3BG322600 Rh3CG292100 Rh3DG287300 Rh4BG178300 Rh5AG290800 Rh5AG291000 Rh5AG294200 Rh5AG294300 Rh5BG297400 Rh5BG302600 Rh5BG303000 Rh5CG329900 Rh5CG330100 Rh5DG307000 Rh5DG311500 Rh5DG311700 Rh6AG095800 Rh6BG086800 Rh6BG086900 Rh6CG082900 Rh6DG078600 Rh6DG078700 Rh7AG173700 Rh7AG174000 Rh7AG174100 Rh7AG327500 Rh7AG412100 Rh7BG177100 Rh7CG182900 Rh7CG183100 Rh7CG344800 Rh7CG429900 Rh7DG176600
rosa_wichuraiana	Rw0G003880 Rw0G006090 Rw2G043200 Rw3G023270 Rw3G023310 Rw5G026990 Rw5G027280 Rw5G027300 Rw5G042270 Rw6G008160 Rw7G015210 Rw7G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccB7I	CCANNNNNTGG	1 cut(s)	573
AccI	GTMKAC	2 cut(s)	399, 646
AclWI	GGATC	2 cut(s)	68, 551
AcsI	RAATTY	2 cut(s)	118, 374
AfaI	GTAC	2 cut(s)	11, 332
AfiI	CCNNNNNNNGG	3 cut(s)	283, 473, 573
AgsI	TTSAA	2 cut(s)	298, 472
AjnI	CCWGG	2 cut(s)	177, 604
AluBI	AGCT	2 cut(s)	55, 448
AluI	AGCT	2 cut(s)	55, 448
Alw21I	GWGCWC	1 cut(s)	450
AlwI	GGATC	2 cut(s)	68, 551
ApoI	RAATTY	2 cut(s)	118, 374
Asp700I	GAANNNNTTC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	1 cut(s)	450
BccI	CCATC	2 cut(s)	130, 263
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	2 cut(s)	179, 606
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	179, 606
BmrFI	CCNGG	2 cut(s)	179, 606
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	2 cut(s)	486, 526
BmuI	ACTGGG	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	178, 254
BsaWI	WCCGGW	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 473, 573
Bse1I	ACTGG	2 cut(s)	47, 278
Bse3DI	GCAATG	1 cut(s)	344
BseBI	CCWGG	2 cut(s)	179, 606
BseDI	CCNNGG	2 cut(s)	178, 254
BseLI	CCNNNNNNNGG	3 cut(s)	283, 473, 573
BseMI	GCAATG	1 cut(s)	344
BseNI	ACTGG	2 cut(s)	47, 278
BsgI	GTGCAG	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	283, 473, 573
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp1407I	TGTACA	2 cut(s)	9, 330
Bsp143I	GATC	2 cut(s)	73, 556
Bsp19I	CCATGG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	2 cut(s)	68, 551
BsrDI	GCAATG	1 cut(s)	344
BsrGI	TGTACA	2 cut(s)	9, 330
BsrI	ACTGG	2 cut(s)	47, 278
BssECI	CCNNGG	2 cut(s)	178, 254
BssMI	GATC	2 cut(s)	73, 556
BssNAI	GTATAC	1 cut(s)	400
BssT1I	CCWWGG	1 cut(s)	254
Bst1107I	GTATAC	1 cut(s)	400
Bst2UI	CCWGG	2 cut(s)	179, 606
Bst4CI	ACNGT	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	495
BstAUI	TGTACA	2 cut(s)	9, 330
BstC8I	GCNNGC	1 cut(s)	541
BstDSI	CCRYGG	1 cut(s)	254
BstKTI	GATC	2 cut(s)	76, 559
BstMBI	GATC	2 cut(s)	73, 556
BstNI	CCWGG	2 cut(s)	179, 606
BstNSI	RCATGY	2 cut(s)	337, 623
BstSCI	CCNGG	2 cut(s)	177, 604
BstSFI	CTRYAG	1 cut(s)	451
BstV2I	GAAGAC	1 cut(s)	585
BstZ17I	GTATAC	1 cut(s)	400
BtgI	CCRYGG	1 cut(s)	254
BtgZI	GCGATG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	435
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	541
CciI	TCATGA	1 cut(s)	363
Csp6I	GTAC	2 cut(s)	10, 331
CviAII	CATG	5 cut(s)	109, 255, 334, 364, 620
CviJI	RGCY	6 cut(s)	55, 259, 276, 448, 609, 639
CviKI_1	RGCY	6 cut(s)	55, 259, 276, 448, 609, 639
CviQI	GTAC	2 cut(s)	10, 331
DpnI	GATC	2 cut(s)	75, 558
DpnII	GATC	2 cut(s)	73, 556
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	254
Eco24I	GRGCYC	1 cut(s)	450
Eco53kI	GAGCTC	1 cut(s)	448
EcoICRI	GAGCTC	1 cut(s)	448
EcoRII	CCWGG	2 cut(s)	177, 604
EcoT14I	CCWWGG	1 cut(s)	254
EcoT22I	ATGCAT	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	5 cut(s)	112, 258, 337, 367, 623
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FatI	CATG	5 cut(s)	108, 254, 333, 363, 619
FauNDI	CATATG	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	399, 646
FriOI	GRGCYC	1 cut(s)	450
HapII	CCGG	1 cut(s)	101
Hin1II	CATG	5 cut(s)	112, 258, 337, 367, 623
HincII	GTYRAC	3 cut(s)	106, 406, 647
HindII	GTYRAC	3 cut(s)	106, 406, 647
HinfI	GANTC	1 cut(s)	97
HpaI	GTTAAC	1 cut(s)	406
HpaII	CCGG	1 cut(s)	101
Hpy166II	GTNNAC	4 cut(s)	106, 400, 406, 647
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	307, 364
Hpy8I	GTNNAC	4 cut(s)	106, 400, 406, 647
HpyAV	CCTTC	1 cut(s)	504
HpyCH4III	ACNGT	1 cut(s)	438
HpyCH4IV	ACGT	2 cut(s)	396, 402
HpyCH4V	TGCA	8 cut(s)	149, 243, 337, 349, 497, 539, 592, 614
HpySE526I	ACGT	2 cut(s)	396, 402
Hsp92II	CATG	5 cut(s)	112, 258, 337, 367, 623
KspAI	GTTAAC	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	73, 556
LweI	GCATC	2 cut(s)	486, 526
MaeII	ACGT	2 cut(s)	396, 402
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	2 cut(s)	75, 558
MboI	GATC	2 cut(s)	73, 556
MboII	GAAGA	2 cut(s)	512, 590
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	6 cut(s)	30, 118, 126, 374, 544, 550
MmeI	TCCRAC	1 cut(s)	268
Mph1103I	ATGCAT	1 cut(s)	594
MroXI	GAANNNNTTC	1 cut(s)	302
MseI	TTAA	7 cut(s)	144, 203, 219, 261, 356, 405, 549
MspI	CCGG	1 cut(s)	101
MspR9I	CCNGG	2 cut(s)	179, 606
MvaI	CCWGG	2 cut(s)	179, 606
NcoI	CCATGG	1 cut(s)	254
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	2 cut(s)	73, 556
NlaIII	CATG	5 cut(s)	112, 258, 337, 367, 623
NsiI	ATGCAT	1 cut(s)	594
NspI	RCATGY	2 cut(s)	337, 623
PagI	TCATGA	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	573
Psp124BI	GAGCTC	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	177, 604
PspGI	CCWGG	2 cut(s)	177, 604
RsaI	GTAC	2 cut(s)	11, 332
RsaNI	GTAC	2 cut(s)	10, 331
SacI	GAGCTC	1 cut(s)	450
SalI	GTCGAC	1 cut(s)	645
SaqAI	TTAA	7 cut(s)	144, 203, 219, 261, 356, 405, 549
Sau3AI	GATC	2 cut(s)	73, 556
ScrFI	CCNGG	2 cut(s)	179, 606
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	8 cut(s)	57, 70, 180, 288, 354, 399, 405, 450
SfaNI	GCATC	2 cut(s)	486, 526
SfcI	CTRYAG	1 cut(s)	451
Sse9I	AATT	6 cut(s)	30, 118, 126, 374, 544, 550
SspI	AATATT	1 cut(s)	386
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	2 cut(s)	177, 604
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	438
TaiI	ACGT	2 cut(s)	399, 405
TaqI	TCGA	3 cut(s)	72, 122, 646
TasI	AATT	6 cut(s)	30, 118, 126, 374, 544, 550
TatI	WGTACW	2 cut(s)	9, 330
TfiI	GAWTC	1 cut(s)	97
Tru1I	TTAA	7 cut(s)	144, 203, 219, 261, 356, 405, 549
Tru9I	TTAA	7 cut(s)	144, 203, 219, 261, 356, 405, 549
TscAI	CASTG	1 cut(s)	435
TspDTI	ATGAA	4 cut(s)	177, 314, 352, 380
TspRI	CASTG	1 cut(s)	435
Van91I	CCANNNNNTGG	1 cut(s)	573
XapI	RAATTY	2 cut(s)	118, 374
XceI	RCATGY	2 cut(s)	337, 623
XmiI	GTMKAC	2 cut(s)	399, 646
XmnI	GAANNNNTTC	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.