Rorug05G0508300
ERF Family

Belongs to the methyltransferase superfamily. METTL16 RlmF family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009335
Physical Location & Seq
Forward (+)
69172049 .. 69175615
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0508300.1

Sequence Viewer

Length: 171 bp
ATGAATTGGGTTCAACGTAAGATCTATCTGTACAATGTCACTTTTGGGCTCTATATGTTGGATTGGTGGGAGCGTTATCTTTTCAATACGTTGGTCCTGGTGTTAATGTGGTTCATCTGTTACAATAGCTCACGGTATTTAACAGAGTTTTGCAAGAGGCATCTATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000154 GO:0001510 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008174 GO:0008649 GO:0008757 GO:0008988 GO:0009056 GO:0009057 GO:0009451 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016072 GO:0016073 GO:0016422 GO:0016433 GO:0016556 GO:0016740 GO:0016741 GO:0017069 GO:0017070 GO:0017148 GO:0019219 GO:0019222 GO:0019439 GO:0022613 GO:0030629 GO:0031167 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032259 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0035613 GO:0040031 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043484 GO:0043487 GO:0043488 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0045935 GO:0046483 GO:0046700 GO:0048024 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050684 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0052907 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0065007 GO:0065008 GO:0070475 GO:0071704 GO:0071840 GO:0080009 GO:0080090 GO:0090304 GO:0097159 GO:0120048 GO:0120049 GO:0140098 GO:0140102 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1903311 GO:1903313 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_10

Protein Analysis

56

Amino Acids

7.27

Weight (kDa)

9.1

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPT_ssu-like PF11779 1 - 51 7.3e-23 Small subunit of serine palmitoyltransferase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 32
AgsI TTSAA 2 cut(s) 14, 85
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 1 cut(s) 129
AluI AGCT 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 94
AvaII GGWCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 98
BglII AGATCT 1 cut(s) 21
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 51
Bsp1407I TGTACA 1 cut(s) 30
Bsp143I GATC 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 30
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 135
BstAUI TGTACA 1 cut(s) 30
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 31
CviJI RGCY 2 cut(s) 49, 129
CviKI_1 RGCY 2 cut(s) 49, 129
CviQI GTAC 1 cut(s) 31
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 51
FaiI YATR 3 cut(s) 54, 56, 166
FriOI GRGCYC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 2 cut(s) 16, 89
HpyCH4V TGCA 1 cut(s) 153
HpySE526I ACGT 2 cut(s) 16, 89
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 2 cut(s) 83, 110
MaeII ACGT 2 cut(s) 16, 89
MaeIII GTNAC 2 cut(s) 37, 119
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 4
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 1 cut(s) 150
MseI TTAA 2 cut(s) 104, 140
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
NdeII GATC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspPI GGNCC 1 cut(s) 94
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 104, 140
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 1 cut(s) 51
SetI ASST 3 cut(s) 19, 92, 131
SgeI CNNG 4 cut(s) 109, 110, 144, 166
SinI GGWCC 1 cut(s) 94
Sse9I AATT 1 cut(s) 4
StyD4I CCNGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 2 cut(s) 19, 92
TasI AATT 1 cut(s) 4
TatI WGTACW 1 cut(s) 30
Tru1I TTAA 2 cut(s) 104, 140
Tru9I TTAA 2 cut(s) 104, 140
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 17, 103
VpaK11BI GGWCC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.