Rorug05G0561200

Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0013455
Physical Location & Seq
Forward (+)
75138400 .. 75138837
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0561200.1

Sequence Viewer

Length: 438 bp
ATGGCCTCCTATTCTGCTTCCATTGAATTTCTGGAAGCTATTCCGGCCAAAGGTGTTCAACACATTCCTAATCCCTCTCTTTCATTGCCAAGTAACCTTGATGTTTGGTCTCCCCCTGTGGCTCCTTACTTCAAAGTCAATACTGATGCGTCTTGGAATGCTGTCTCTAATTGTGGGGGTTTGGCTGCTGTTGTTCGTGATCATGTGGGTAAGTTAGTCGATGGCTTCGCTGGAGTGTCGCATGCTCTTTCGCCGATGGCAGCAGAGCACATGGCTATTTGTGAGGGGCTTATCCTCATTGCCAATCTTCCTCCGGGGCCGATCACTTTAGCATCTGATTCCCTCTCTCTAATCCAAGCTCTCAAGTCCGGTATCCCTAGCCTCCTCAGGACTGGACCGTCACTAACTTGTTTTTTAAAGCCCGGTACCTCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000278 GO:0000281 GO:0000910 GO:0001931 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005938 GO:0006464 GO:0006469 GO:0006470 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007015 GO:0007049 GO:0007154 GO:0007163 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008104 GO:0008150 GO:0008152 GO:0008154 GO:0008289 GO:0009267 GO:0009605 GO:0009628 GO:0009651 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0010605 GO:0014065 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0019637 GO:0022402 GO:0022603 GO:0022604 GO:0022607 GO:0023052 GO:0030010 GO:0030029 GO:0030030 GO:0030031 GO:0030036 GO:0030041 GO:0030258 GO:0030587 GO:0031152 GO:0031254 GO:0031257 GO:0031268 GO:0031269 GO:0031272 GO:0031279 GO:0031323 GO:0031324 GO:0031344 GO:0031399 GO:0031400 GO:0031667 GO:0031668 GO:0031669 GO:0032153 GO:0032155 GO:0032268 GO:0032269 GO:0032502 GO:0032796 GO:0032879 GO:0033036 GO:0033554 GO:0033673 GO:0034461 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0034613 GO:0034622 GO:0035335 GO:0035556 GO:0036051 GO:0036052 GO:0036211 GO:0040011 GO:0042221 GO:0042325 GO:0042326 GO:0042330 GO:0042578 GO:0042594 GO:0042995 GO:0043086 GO:0043167 GO:0043168 GO:0043170 GO:0043327 GO:0043412 GO:0043549 GO:0043933 GO:0044085 GO:0044087 GO:0044092 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044448 GO:0044459 GO:0044464 GO:0044764 GO:0045761 GO:0045859 GO:0045936 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0048015 GO:0048017 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048856 GO:0048870 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0050919 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051179 GO:0051246 GO:0051248 GO:0051258 GO:0051270 GO:0051272 GO:0051285 GO:0051286 GO:0051301 GO:0051338 GO:0051339 GO:0051348 GO:0051641 GO:0051674 GO:0051703 GO:0051704 GO:0051716 GO:0051800 GO:0052866 GO:0060255 GO:0060491 GO:0061640 GO:0065003 GO:0065007 GO:0065009 GO:0070300 GO:0070727 GO:0071496 GO:0071704 GO:0071840 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0090702 GO:0097435 GO:0098630 GO:0098743 GO:0099120 GO:0099568 GO:0099738 GO:0106017 GO:0120025 GO:0120031 GO:0120032 GO:0120035 GO:0120036 GO:0140096 GO:1901564 GO:1903047 GO:1990753
KEGG Pathways
Metabolic & Signaling
ko00562 ko01521 ko03050 ko04068 ko04070 ko04071 ko04115 ko04140 ko04150 ko04151 ko04212 ko04218 ko04510 ko04931 ko05161 ko05165 ko05169 ko05200 ko05206 ko05213 ko05214 ko05215 ko05218 ko05222 ko05224 ko05225 ko05230 map00562 map01521 map03050 map04068 map04070 map04071 map04115 map04140 map04150 map04151 map04212 map04218 map04510 map04931 map05161 map05165 map05169 map05200 map05206 map05213 map05214 map05215 map05218 map05222 map05224 map05225 map05230
Pfam Domains
Protein Families
DSPc

Protein Analysis

145

Amino Acids

15.0

Weight (kDa)

6.15

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 47 - 123 2.7e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013455)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19420
fragaria_vesca FvH4_2g05490 FvH4_2g05490
malus_domestica MD00G1045500.v1.1 MD05G1087100.v1.1
prunus_persica Prupe.8G131700_v2.0.a1
pyrus_communis pycom05g08640 pycom10g08170
rosa_chinensis RchiOBHm_Chr6g0255761
rosa_laevigata RLG00000014815
rosa_roxburghii Rroxscaffold_7G00209690
rosa_rugosa Rorug05G0561200 Rorug05G0561300
rosa_samantha Rh6AG079200 Rh6BG072300 Rh6CG070500 Rh6DG067700
rosa_wichuraiana Rw6G006830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 397
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 3 cut(s) 26, 59, 133
AluBI AGCT 2 cut(s) 38, 359
AluI AGCT 2 cut(s) 38, 359
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 114, 169
AoxI GGCC 3 cut(s) 3, 45, 317
ApeKI GCWGC 2 cut(s) 185, 260
ApoI RAATTY 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 39
Asp718I GGTACC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 317, 395
AsuC2I CCSGG 2 cut(s) 315, 423
AvaII GGWCC 1 cut(s) 395
AxyI CCTNAGG 1 cut(s) 386
BanI GGYRCC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 2 cut(s) 172, 272
BccI CCATC 2 cut(s) 215, 250
BciVI GTATCC 1 cut(s) 383
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 2 cut(s) 315, 423
BcoDI GTCTC 2 cut(s) 114, 169
BfaI CTAG 1 cut(s) 378
BfuI GTATCC 1 cut(s) 383
BisI GCNGC 2 cut(s) 186, 261
BlsI GCNGC 2 cut(s) 187, 262
Bme1390I CCNGG 2 cut(s) 315, 423
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 2 cut(s) 317, 395
BmiI GGNNCC 3 cut(s) 123, 318, 427
BmrFI CCNGG 2 cut(s) 315, 423
BmsI GCATC 2 cut(s) 136, 341
BpmI CTGGAG 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 315, 423
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 314
BsaWI WCCGGW 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 397
Bse21I CCTNAGG 1 cut(s) 386
Bse3DI GCAATG 2 cut(s) 83, 297
BseDI CCNNGG 1 cut(s) 314
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 2 cut(s) 83, 297
BseMII CTCAG 1 cut(s) 400
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 374
BseXI GCAGC 2 cut(s) 172, 272
BshFI GGCC 3 cut(s) 5, 47, 319
BshNI GGYRCC 1 cut(s) 425
BsiHKAI GWGCWC 1 cut(s) 270
BsiSI CCGG 4 cut(s) 44, 314, 369, 423
BslI CCNNNNNNNGG 1 cut(s) 50
BsmAI GTCTC 2 cut(s) 114, 169
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 3 cut(s) 5, 47, 319
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 199, 321
BspANI GGCC 3 cut(s) 5, 47, 319
BspCNI CTCAG 1 cut(s) 399
BspLI GGNNCC 3 cut(s) 123, 318, 427
BspT107I GGYRCC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 2 cut(s) 83, 297
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 2 cut(s) 199, 321
Bst4CI ACNGT 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 1 cut(s) 386
BstKTI GATC 2 cut(s) 202, 324
BstMAI GTCTC 2 cut(s) 114, 169
BstMBI GATC 2 cut(s) 199, 321
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 313, 421
BstV1I GCAGC 2 cut(s) 172, 272
Bsu36I CCTNAGG 1 cut(s) 386
BsuI GTATCC 1 cut(s) 383
BsuRI GGCC 3 cut(s) 5, 47, 319
Cac8I GCNNGC 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 317, 395
CseI GACGC 1 cut(s) 138
Csp6I GTAC 1 cut(s) 426
CviAII CATG 3 cut(s) 203, 242, 271
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 386
DpnI GATC 2 cut(s) 201, 323
DpnII GATC 2 cut(s) 199, 321
DraI TTTAAA 1 cut(s) 417
DrdI GACNNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 397
EaeI YGGCCR 1 cut(s) 45
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 395
Eco81I CCTNAGG 1 cut(s) 386
FaeI CATG 3 cut(s) 206, 245, 274
FaiI YATR 3 cut(s) 204, 243, 272
FatI CATG 3 cut(s) 202, 241, 270
FbaI TGATCA 1 cut(s) 199
Fnu4HI GCNGC 2 cut(s) 186, 261
Fsp4HI GCNGC 2 cut(s) 186, 261
FspBI CTAG 1 cut(s) 378
GluI GCNGC 2 cut(s) 186, 261
GsuI CTGGAG 1 cut(s) 252
HaeIII GGCC 3 cut(s) 5, 47, 319
HapII CCGG 4 cut(s) 44, 314, 369, 423
HgaI GACGC 1 cut(s) 138
Hin1II CATG 3 cut(s) 206, 245, 274
HinfI GANTC 1 cut(s) 338
HpaII CCGG 4 cut(s) 44, 314, 369, 423
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 3 cut(s) 32, 197, 388
HpyCH4III ACNGT 1 cut(s) 399
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 386
Hsp92II CATG 3 cut(s) 206, 245, 274
KpnI GGTACC 1 cut(s) 429
Ksp22I TGATCA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 199, 321
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 8 cut(s) 17, 57, 129, 216, 327, 373, 378, 382
Lsp1109I GCAGC 2 cut(s) 172, 272
LweI GCATC 2 cut(s) 136, 341
MaeI CTAG 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 92, 399
MalI GATC 2 cut(s) 201, 323
MboI GATC 2 cut(s) 199, 321
MboII GAAGA 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 270
MluCI AATT 2 cut(s) 26, 169
MnlI CCTC 8 cut(s) 16, 85, 277, 305, 321, 353, 392, 395
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 1 cut(s) 416
MspI CCGG 4 cut(s) 44, 314, 369, 423
MspR9I CCNGG 2 cut(s) 315, 423
Mva1269I GAATGC 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 2 cut(s) 315, 423
NdeII GATC 2 cut(s) 199, 321
NlaIII CATG 3 cut(s) 206, 245, 274
NlaIV GGNNCC 3 cut(s) 123, 318, 427
NmuCI GTSAC 1 cut(s) 399
NspI RCATGY 1 cut(s) 245
PaeI GCATGC 1 cut(s) 245
PctI GAATGC 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 187, 262
PspN4I GGNNCC 3 cut(s) 123, 318, 427
PspPI GGNCC 2 cut(s) 317, 395
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 1 cut(s) 416
SatI GCNGC 2 cut(s) 186, 261
Sau3AI GATC 2 cut(s) 199, 321
Sau96I GGNCC 2 cut(s) 317, 395
ScrFI CCNGG 2 cut(s) 315, 423
SduI GDGCHC 1 cut(s) 270
SetI ASST 5 cut(s) 40, 55, 99, 361, 431
SfaNI GCATC 2 cut(s) 136, 341
SinI GGWCC 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 245
Sse9I AATT 2 cut(s) 26, 169
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 313, 421
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 219
TasI AATT 2 cut(s) 26, 169
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 416
Tru9I TTAA 1 cut(s) 416
TseFI GTSAC 1 cut(s) 399
TseI GCWGC 2 cut(s) 185, 260
Tsp45I GTSAC 1 cut(s) 399
TspDTI ATGAA 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 395
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 245
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XmnI GAANNNNTTC 1 cut(s) 39
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.