Rorug06G0091200

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014656
Physical Location & Seq
Reverse (-)
12180882 .. 12183565
2684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0091200.1

Sequence Viewer

Length: 945 bp
ATGTCCGAGGATTTCCGAGAGGAAAAACAGGTGGAGGAGAAGGACAGGATGGACATTTCCCCGCTCTCTGTCACCAGACAACAATTTGACAATTTGACCCTCCATTCAACATTCTCGGTACAGCAGAGGAAGCGCTCTAAGATCCGGACAAGTCGATTTAGTCCAACCCAAATTGTCAAATTCCACAATTTGACCCTTGATTCTCCAAACTCGGAACAGAGGCAGCCATTGGCGGAAGCTAACAAATATGGGTTCAAAACTCCCAAAGGGAAAAGACATTTGAGTCCAGGCCTTAACACCAAGCGAGAAGTTTCTAGTGATCCTCAGAGGCATGGAGGCTGCAAACGGAGTCGAACCAACCCGTCCATGTCCTGGCATTTTGGCCATCCTGAAGAGTCTTCTGTCAAAAGCCAAGTTAGAGAAATCCCAGAGAATCTAGAAGCCGAATGTCCCTTCTTTATGAAGTCCATGATACGATCAAATATTTCCGTTTGCTTTATGTTGACACTGCCTAGGAGATTCTGCAACTTGCATTTACCTGTGCATGGTACAGCAACAATAACATTGGAAGATAAAGAAGGGAAAGAATATGAAACAAAATTTCTTGCGGACAAAAGGACGCTGAGTGGTGGATGGAAAGGATTTAGTCAGGCAAAGGACTTGCGTCTTGATGATGTTCTAGTTTTCCAGTTGGTTAGCCCTTTGAAGTTCAAGGTGTACAGATTGAGACCAGAATATGATCCAAGTGAAGATGATGTAGATGCAGCTTTTGTCCTCTTGAAAATGAGTGCCTCTGAACAAACACTGTTTGATGATGATGAGTCTGAGGATCAGATTACAGAGATAAGGAATTTGGCTCCTATCACGGTGGTGGATTTGATCCGGCCAGGACAAGCTGCTGATTTTGAAGATGTTAGAAGTTATGAGAATTTCGCCAGTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

314

Amino Acids

36.13

Weight (kDa)

6.48

Isoelectric Point (pI)

63.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 153 - 238 5.9e-14 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13700 FvH4_2g13700 FvH4_2g13700
malus_domestica MD05G1026600.v1.1
prunus_persica Prupe.8G031100_v2.0.a1
pyrus_communis pycom05g01840
rosa_chinensis RchiOBHm_Chr6g0275381
rosa_laevigata RLG00000013470
rosa_multiflora Rmu_sc0004143.1_g000003
rosa_roxburghii Rroxscaffold_7G00193370
rosa_rugosa Rorug06G0091200 Rorug06G0091200 Rorug06G0091200
rosa_samantha Rh6AG205100 Rh6BG207900 Rh6CG210300
rosa_wichuraiana Rw6G017800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 282
AccB7I CCANNNNNTGG 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 64
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 3 cut(s) 62, 233, 608
AclWI GGATC 5 cut(s) 136, 314, 734, 837, 874
AcoI YGGCCR 2 cut(s) 382, 884
AcsI RAATTY 4 cut(s) 179, 599, 850, 928
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 4 cut(s) 120, 550, 719, 940
AfeI AGCGCT 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 372, 545
AgsI TTSAA 6 cut(s) 108, 256, 706, 712, 781, 908
AjnI CCWGG 3 cut(s) 286, 371, 886
AleI CACNNNNGTG 1 cut(s) 869
AluBI AGCT 3 cut(s) 239, 767, 896
AluI AGCT 3 cut(s) 239, 767, 896
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 5 cut(s) 136, 314, 734, 837, 874
Aor13HI TCCGGA 1 cut(s) 144
Aor51HI AGCGCT 1 cut(s) 134
AoxI GGCC 3 cut(s) 289, 382, 884
ApeKI GCWGC 4 cut(s) 223, 339, 764, 896
ApoI RAATTY 4 cut(s) 179, 599, 850, 928
AspA2I CCTAGG 1 cut(s) 512
AspLEI GCGC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 64
AvrII CCTAGG 1 cut(s) 512
BalI TGGCCA 1 cut(s) 384
BbsI GAAGAC 1 cut(s) 390
BbvI GCAGC 4 cut(s) 235, 326, 776, 883
BccI CCATC 3 cut(s) 43, 393, 627
BciT130I CCWGG 3 cut(s) 288, 373, 888
BcoDI GTCTC 1 cut(s) 721
BfaI CTAG 4 cut(s) 315, 437, 513, 680
BfoI RGCGCY 1 cut(s) 136
BisI GCNGC 4 cut(s) 224, 340, 765, 897
BlnI CCTAGG 1 cut(s) 512
BlsI GCNGC 4 cut(s) 225, 341, 766, 898
Bme1390I CCNGG 3 cut(s) 288, 373, 888
BmiI GGNNCC 1 cut(s) 858
BmrFI CCNGG 3 cut(s) 288, 373, 888
BmsI GCATC 1 cut(s) 751
BoxI GACNNNNGTC 1 cut(s) 663
BpiI GAAGAC 1 cut(s) 390
BsaAI YACGTR 1 cut(s) 942
BsaI GGTCTC 1 cut(s) 721
BsaJI CCNNGG 2 cut(s) 6, 512
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 545
Bse1I ACTGG 2 cut(s) 688, 936
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 3 cut(s) 288, 373, 888
BseDI CCNNGG 2 cut(s) 6, 512
BseGI GGATG 3 cut(s) 54, 385, 638
BseLI CCNNNNNNNGG 2 cut(s) 372, 545
BseMII CTCAG 3 cut(s) 338, 614, 816
BseNI ACTGG 2 cut(s) 688, 936
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 4 cut(s) 235, 326, 776, 883
BshFI GGCC 3 cut(s) 291, 384, 886
BsiSI CCGG 2 cut(s) 145, 883
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 372, 545
BsmAI GTCTC 1 cut(s) 721
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 3 cut(s) 291, 384, 886
Bso31I GGTCTC 1 cut(s) 721
Bsp13I TCCGGA 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 717
Bsp143I GATC 6 cut(s) 141, 319, 476, 739, 829, 879
BspACI CCGC 3 cut(s) 62, 233, 608
BspANI GGCC 3 cut(s) 291, 384, 886
BspCNI CTCAG 3 cut(s) 337, 615, 817
BspEI TCCGGA 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 858
BspPI GGATC 5 cut(s) 136, 314, 734, 837, 874
BspTNI GGTCTC 1 cut(s) 721
BsrBI CCGCTC 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 717
BsrI ACTGG 2 cut(s) 688, 936
BssECI CCNNGG 2 cut(s) 6, 512
BssMI GATC 6 cut(s) 141, 319, 476, 739, 829, 879
BssT1I CCWWGG 1 cut(s) 512
Bst2UI CCWGG 3 cut(s) 288, 373, 888
Bst4CI ACNGT 2 cut(s) 807, 868
Bst6I CTCTTC 1 cut(s) 387
BstAUI TGTACA 1 cut(s) 717
BstBAI YACGTR 1 cut(s) 942
BstDEI CTNAG 4 cut(s) 138, 324, 623, 825
BstF5I GGATG 3 cut(s) 54, 385, 638
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 6 cut(s) 144, 322, 479, 742, 832, 882
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 6 cut(s) 141, 319, 476, 739, 829, 879
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 3 cut(s) 288, 373, 888
BstPAI GACNNNNGTC 1 cut(s) 663
BstSCI CCNGG 3 cut(s) 286, 371, 886
BstV1I GCAGC 4 cut(s) 235, 326, 776, 883
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BsuRI GGCC 3 cut(s) 291, 384, 886
BtsCI GGATG 3 cut(s) 54, 385, 638
BtsI GCAGTG 1 cut(s) 506
BtsIMutI CAGTG 2 cut(s) 506, 803
CfoI GCGC 1 cut(s) 135
CseI GACGC 2 cut(s) 628, 653
Csp6I GTAC 4 cut(s) 119, 549, 718, 939
CviAII CATG 4 cut(s) 332, 367, 469, 545
CviQI GTAC 4 cut(s) 119, 549, 718, 939
DdeI CTNAG 4 cut(s) 138, 324, 623, 825
DpnI GATC 6 cut(s) 143, 321, 478, 741, 831, 881
DpnII GATC 6 cut(s) 141, 319, 476, 739, 829, 879
DrdI GACNNNNNNGTC 1 cut(s) 282
DseDI GACNNNNNNGTC 1 cut(s) 282
EaeI YGGCCR 2 cut(s) 382, 884
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 512
Eco147I AGGCCT 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 721
Eco47III AGCGCT 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 411
EcoRII CCWGG 3 cut(s) 286, 371, 886
EcoT14I CCWWGG 1 cut(s) 512
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 4 cut(s) 335, 370, 472, 548
FaqI GGGAC 1 cut(s) 435
FatI CATG 4 cut(s) 331, 366, 468, 544
FauI CCCGC 1 cut(s) 69
Fnu4HI GCNGC 4 cut(s) 224, 340, 765, 897
FokI GGATG 3 cut(s) 61, 372, 645
Fsp4HI GCNGC 4 cut(s) 224, 340, 765, 897
FspBI CTAG 4 cut(s) 315, 437, 513, 680
GlaI GCGC 1 cut(s) 134
GluI GCNGC 4 cut(s) 224, 340, 765, 897
HaeII RGCGCY 1 cut(s) 136
HaeIII GGCC 3 cut(s) 291, 384, 886
HapII CCGG 2 cut(s) 145, 883
HgaI GACGC 2 cut(s) 628, 653
HhaI GCGC 1 cut(s) 135
Hin1II CATG 4 cut(s) 335, 370, 472, 548
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
HinfI GANTC 7 cut(s) 200, 283, 349, 395, 433, 519, 821
HpaII CCGG 2 cut(s) 145, 883
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 504, 718
Hpy188I TCNGA 7 cut(s) 7, 17, 214, 327, 796, 826, 834
Hpy188III TCNNGA 5 cut(s) 145, 389, 437, 668, 778
Hpy8I GTNNAC 2 cut(s) 504, 718
HpyAV CCTTC 3 cut(s) 34, 463, 572
HpyCH4III ACNGT 2 cut(s) 807, 868
HpyCH4IV ACGT 1 cut(s) 941
HpyCH4V TGCA 5 cut(s) 342, 525, 532, 544, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 4 cut(s) 138, 324, 623, 825
HpySE526I ACGT 1 cut(s) 941
Hsp92II CATG 4 cut(s) 335, 370, 472, 548
HspAI GCGC 1 cut(s) 133
Kpn2I TCCGGA 1 cut(s) 144
Kzo9I GATC 6 cut(s) 141, 319, 476, 739, 829, 879
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 4 cut(s) 235, 326, 776, 883
LweI GCATC 1 cut(s) 751
MaeI CTAG 4 cut(s) 315, 437, 513, 680
MaeII ACGT 1 cut(s) 941
MaeIII GTNAC 1 cut(s) 70
MalI GATC 6 cut(s) 143, 321, 478, 741, 831, 881
MbiI CCGCTC 1 cut(s) 64
MboI GATC 6 cut(s) 141, 319, 476, 739, 829, 879
MboII GAAGA 5 cut(s) 390, 404, 581, 761, 920
MflI RGATCY 1 cut(s) 141
MlsI TGGCCA 1 cut(s) 384
MluCI AATT 8 cut(s) 83, 91, 171, 179, 187, 599, 850, 928
MluNI TGGCCA 1 cut(s) 384
MlyI GAGTC 4 cut(s) 292, 358, 404, 830
MmeI TCCRAC 1 cut(s) 188
Mox20I TGGCCA 1 cut(s) 384
MroI TCCGGA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 384
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 869
Msp20I TGGCCA 1 cut(s) 384
MspI CCGG 2 cut(s) 145, 883
MspR9I CCNGG 3 cut(s) 288, 373, 888
MvaI CCWGG 3 cut(s) 288, 373, 888
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 6 cut(s) 141, 319, 476, 739, 829, 879
NlaIII CATG 4 cut(s) 335, 370, 472, 548
NlaIV GGNNCC 1 cut(s) 858
NmuCI GTSAC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 869
PceI AGGCCT 1 cut(s) 291
PfeI GAWTC 3 cut(s) 200, 433, 519
PflMI CCANNNNNTGG 1 cut(s) 372
PkrI GCNGC 4 cut(s) 225, 341, 766, 898
PleI GAGTC 4 cut(s) 291, 357, 403, 829
PpsI GAGTC 4 cut(s) 291, 357, 403, 829
Ppu21I YACGTR 1 cut(s) 942
PshAI GACNNNNGTC 1 cut(s) 663
Psp6I CCWGG 3 cut(s) 286, 371, 886
PspGI CCWGG 3 cut(s) 286, 371, 886
PspN4I GGNNCC 1 cut(s) 858
PsuI RGATCY 1 cut(s) 141
RsaI GTAC 4 cut(s) 120, 550, 719, 940
RsaNI GTAC 4 cut(s) 119, 549, 718, 939
RseI CAYNNNNRTG 1 cut(s) 869
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 4 cut(s) 224, 340, 765, 897
Sau3AI GATC 6 cut(s) 141, 319, 476, 739, 829, 879
SchI GAGTC 4 cut(s) 292, 358, 404, 830
ScrFI CCNGG 3 cut(s) 288, 373, 888
SetI ASST 7 cut(s) 33, 241, 541, 717, 769, 898, 944
SfaNI GCATC 1 cut(s) 751
SmiMI CAYNNNNRTG 1 cut(s) 869
Sse9I AATT 8 cut(s) 83, 91, 171, 179, 187, 599, 850, 928
SseBI AGGCCT 1 cut(s) 291
SsiI CCGC 3 cut(s) 62, 233, 608
SspI AATATT 1 cut(s) 484
SspMI CTAG 4 cut(s) 315, 437, 513, 680
StuI AGGCCT 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 286, 371, 886
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 2 cut(s) 807, 868
TaiI ACGT 1 cut(s) 944
TaqI TCGA 2 cut(s) 154, 352
TasI AATT 8 cut(s) 83, 91, 171, 179, 187, 599, 850, 928
TatI WGTACW 1 cut(s) 717
TfiI GAWTC 3 cut(s) 200, 433, 519
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TscAI CASTG 2 cut(s) 513, 810
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 4 cut(s) 223, 339, 764, 896
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 476, 606
TspGWI ACGGA 2 cut(s) 361, 478
TspRI CASTG 2 cut(s) 513, 810
Van91I CCANNNNNTGG 1 cut(s) 372
XapI RAATTY 4 cut(s) 179, 599, 850, 928
XbaI TCTAGA 1 cut(s) 436
XmaJI CCTAGG 1 cut(s) 512
XspI CTAG 4 cut(s) 315, 437, 513, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.