Rw6G017800

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0014656
Physical Location & Seq
Reverse (-)
35187534 .. 35201237
13704 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G017800.1

Sequence Viewer

Length: 900 bp
ATGTTGAAGGCCAAGAGTTTGAGCAAAGTAGCGGTGCCGCCTTCACTCATACACAATCCTTCTCCTGCTAACATCCAATCCACTCGCCTCGCTCTCCATGTTAGCGAGGATGGCTCTTCATGTTGGCTCTACATCGCCTCCGGCTGCCAAATCTACAAGCTACAGGTTGCGTTGGATGATTCTCTGGTCAGTGAAGGGAAAGATAGCCTTCTGATCCCTGTACACAGGCAGGTTATGAACTCATTTATGGTTAATCGGTGCCCACATCGTTCAGAAATTCAGAGTATGGTGCTTGCTGAAACTGAGAGCACTTGCAATTCAATGTTGGGAACTGTGGATTCTTATGGTCACCTTATTGTATCTAAACTGGACACTAATGGTGAAGATGTAGAGAGGCTTACTTATTCAGTATTGCCTCGTGATTGCGGCATTGGAGAGAGTGGGTGGGCAGGTCTTTGCTTCAATCCAATACAATTGTCCACGGCAGCTGTTGCACGTAGCTTCTGCAAAACCATTGATGTTTATGACCAGGATATCCACGTTAGGACATTATGTACACTCTTGTATCCAACATCACTGAGCTTCATGCAAAGTTCGCGTTATGGAAATGAAAGTTCTATATTAGCTGTCACTGAAGGTTGCCAGCTGAGTATATGGGACTTGAGAATGAAAGAAAATGGCGGCTGTCTACAACGAATATGTGGTTCCCTTGGTGATGTCTTCTACACTGTATGCAGTTCCTCAACTGGAAATATTGCAGTCGGTGGAGCTGATCGTACAGTGACAATCTATGATCCTCGCAGATGGGCATCACTATCAAGATGGGTGAACTGCTCGAAATATGAGGAAAAGGAATTATTCCATTCCAACTCAAAATCCACTCTAACAAACAAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

299

Amino Acids

32.89

Weight (kDa)

6.38

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13700 FvH4_2g13700 FvH4_2g13700
malus_domestica MD05G1026600.v1.1
prunus_persica Prupe.8G031100_v2.0.a1
pyrus_communis pycom05g01840
rosa_chinensis RchiOBHm_Chr6g0275381
rosa_laevigata RLG00000013470
rosa_multiflora Rmu_sc0004143.1_g000003
rosa_roxburghii Rroxscaffold_7G00193370
rosa_rugosa Rorug06G0091200 Rorug06G0091200 Rorug06G0091200
rosa_samantha Rh6AG205100 Rh6BG207900 Rh6CG210300
rosa_wichuraiana Rw6G017800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 220, 440
AccB1I GGYRCC 2 cut(s) 34, 258
AccI GTMKAC 1 cut(s) 688
AccII CGCG 1 cut(s) 598
AciI CCGC 4 cut(s) 32, 38, 426, 681
AclWI GGATC 2 cut(s) 208, 788
AcsI RAATTY 1 cut(s) 276
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 3 cut(s) 222, 556, 778
AgsI TTSAA 3 cut(s) 7, 321, 463
AjnI CCWGG 1 cut(s) 528
AluBI AGCT 7 cut(s) 160, 488, 501, 582, 626, 646, 770
AluI AGCT 7 cut(s) 160, 488, 501, 582, 626, 646, 770
Alw21I GWGCWC 1 cut(s) 311
AlwI GGATC 2 cut(s) 208, 788
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 144, 485
ApoI RAATTY 1 cut(s) 276
AsuHPI GGTGA 4 cut(s) 341, 392, 725, 838
BaeGI GKGCMC 1 cut(s) 263
BaeI ACNNNNGTAYC 2 cut(s) 548, 581
BanI GGYRCC 2 cut(s) 34, 258
BauI CACGAG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 712
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 131, 497
BccI CCATC 3 cut(s) 104, 798, 816
BceAI ACGGC 1 cut(s) 498
BciT130I CCWGG 1 cut(s) 530
BciVI GTATCC 1 cut(s) 576
BfmI CTRYAG 1 cut(s) 161
BfuAI ACCTGC 2 cut(s) 220, 440
BfuI GTATCC 1 cut(s) 576
BisI GCNGC 5 cut(s) 38, 145, 427, 486, 682
BlsI GCNGC 5 cut(s) 39, 146, 428, 487, 683
Bme1390I CCNGG 1 cut(s) 530
BmiI GGNNCC 3 cut(s) 36, 260, 706
BmrFI CCNGG 1 cut(s) 530
BmsI GCATC 1 cut(s) 818
BpiI GAAGAC 1 cut(s) 712
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpuEI CTTGAG 1 cut(s) 682
BsaAI YACGTR 1 cut(s) 497
BsaBI GATNNNNATC 1 cut(s) 808
BsaJI CCNNGG 2 cut(s) 480, 709
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bse1I ACTGG 2 cut(s) 372, 751
Bse8I GATNNNNATC 1 cut(s) 808
BseBI CCWGG 1 cut(s) 530
BseDI CCNNGG 2 cut(s) 480, 709
BseGI GGATG 3 cut(s) 72, 115, 181
BseJI GATNNNNATC 1 cut(s) 808
BseMII CTCAG 3 cut(s) 294, 569, 638
BseNI ACTGG 2 cut(s) 372, 751
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 2 cut(s) 131, 497
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 2 cut(s) 34, 258
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 671
BsmFI GGGAC 1 cut(s) 671
BsnI GGCC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 263, 311
Bsp1407I TGTACA 2 cut(s) 220, 554
Bsp143I GATC 3 cut(s) 213, 772, 793
BspACI CCGC 4 cut(s) 32, 38, 426, 681
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 3 cut(s) 295, 570, 639
BspFNI CGCG 1 cut(s) 598
BspLI GGNNCC 3 cut(s) 36, 260, 706
BspMI ACCTGC 2 cut(s) 220, 440
BspPI GGATC 2 cut(s) 208, 788
BspQI GCTCTTC 1 cut(s) 121
BspT107I GGYRCC 2 cut(s) 34, 258
BsrGI TGTACA 2 cut(s) 220, 554
BsrI ACTGG 2 cut(s) 372, 751
BssECI CCNNGG 2 cut(s) 480, 709
BssMI GATC 3 cut(s) 213, 772, 793
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 1 cut(s) 709
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 3 cut(s) 334, 730, 781
Bst6I CTCTTC 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 491
BstAUI TGTACA 2 cut(s) 220, 554
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 294, 644
BstDEI CTNAG 3 cut(s) 303, 578, 647
BstDSI CCRYGG 1 cut(s) 480
BstEII GGTNACC 1 cut(s) 347
BstF5I GGATG 3 cut(s) 72, 115, 181
BstFNI CGCG 1 cut(s) 598
BstKTI GATC 3 cut(s) 216, 775, 796
BstMBI GATC 3 cut(s) 213, 772, 793
BstMWI GCNNNNNNNGC 3 cut(s) 111, 491, 595
BstNI CCWGG 1 cut(s) 530
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 1 cut(s) 528
BstSFI CTRYAG 1 cut(s) 161
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 131, 497
BstV2I GAAGAC 1 cut(s) 712
BsuI GTATCC 1 cut(s) 576
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 480
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 72, 115, 181
BtsIMutI CAGTG 5 cut(s) 196, 575, 630, 726, 786
BveI ACCTGC 2 cut(s) 220, 440
Cac8I GCNNGC 2 cut(s) 294, 644
Csp6I GTAC 3 cut(s) 221, 555, 777
CviAII CATG 3 cut(s) 98, 120, 586
CviQI GTAC 3 cut(s) 221, 555, 777
DdeI CTNAG 3 cut(s) 303, 578, 647
DpnI GATC 3 cut(s) 215, 774, 795
DpnII GATC 3 cut(s) 213, 772, 793
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 709
Eco32I GATATC 1 cut(s) 535
Eco57I CTGAAG 1 cut(s) 654
Eco91I GGTNACC 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 528
EcoRV GATATC 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 709
ErhI CCWWGG 1 cut(s) 709
FaeI CATG 3 cut(s) 101, 123, 589
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 1 cut(s) 671
FatI CATG 3 cut(s) 97, 119, 585
FblI GTMKAC 1 cut(s) 688
Fnu4HI GCNGC 5 cut(s) 38, 145, 427, 486, 682
FokI GGATG 3 cut(s) 59, 122, 188
Fsp4HI GCNGC 5 cut(s) 38, 145, 427, 486, 682
GluI GCNGC 5 cut(s) 38, 145, 427, 486, 682
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 141
Hin1II CATG 3 cut(s) 101, 123, 589
HinfI GANTC 2 cut(s) 179, 338
HpaII CCGG 1 cut(s) 141
HphI GGTGA 4 cut(s) 341, 392, 725, 838
Hpy166II GTNNAC 5 cut(s) 223, 480, 557, 689, 829
Hpy188I TCNGA 3 cut(s) 213, 274, 282
Hpy188III TCNNGA 2 cut(s) 419, 819
Hpy8I GTNNAC 5 cut(s) 223, 480, 557, 689, 829
HpyAV CCTTC 5 cut(s) 51, 69, 188, 218, 629
HpyCH4III ACNGT 3 cut(s) 334, 730, 781
HpyCH4IV ACGT 2 cut(s) 496, 540
HpyCH4V TGCA 6 cut(s) 315, 494, 507, 589, 735, 758
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 491, 595
HpyF3I CTNAG 3 cut(s) 303, 578, 647
HpySE526I ACGT 2 cut(s) 496, 540
Hsp92II CATG 3 cut(s) 101, 123, 589
Kzo9I GATC 3 cut(s) 213, 772, 793
LguI GCTCTTC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 767
Lsp1109I GCAGC 2 cut(s) 131, 497
LweI GCATC 1 cut(s) 818
MaeII ACGT 2 cut(s) 496, 540
MaeIII GTNAC 3 cut(s) 347, 628, 781
MalI GATC 3 cut(s) 215, 774, 795
MboI GATC 3 cut(s) 213, 772, 793
MboII GAAGA 3 cut(s) 108, 395, 712
MfeI CAATTG 1 cut(s) 473
MhlI GDGCHC 2 cut(s) 263, 311
MluCI AATT 4 cut(s) 276, 316, 473, 854
MmeI TCCRAC 3 cut(s) 153, 593, 891
MnlI CCTC 8 cut(s) 98, 100, 148, 387, 426, 751, 807, 838
MseI TTAA 1 cut(s) 252
MspA1I CMGCKG 2 cut(s) 488, 646
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 530
MunI CAATTG 1 cut(s) 473
MvaI CCWGG 1 cut(s) 530
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 3 cut(s) 111, 491, 595
NdeII GATC 3 cut(s) 213, 772, 793
NlaIII CATG 3 cut(s) 101, 123, 589
NlaIV GGNNCC 3 cut(s) 36, 260, 706
NmuCI GTSAC 3 cut(s) 347, 628, 781
PciSI GCTCTTC 1 cut(s) 121
PfeI GAWTC 2 cut(s) 179, 338
PkrI GCNGC 5 cut(s) 39, 146, 428, 487, 683
Ppu21I YACGTR 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 528
PspEI GGTNACC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 3 cut(s) 36, 260, 706
PvuII CAGCTG 2 cut(s) 488, 646
RsaI GTAC 3 cut(s) 222, 556, 778
RsaNI GTAC 3 cut(s) 221, 555, 777
SapI GCTCTTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 252
SatI GCNGC 5 cut(s) 38, 145, 427, 486, 682
Sau3AI GATC 3 cut(s) 213, 772, 793
ScrFI CCNGG 1 cut(s) 530
SduI GDGCHC 2 cut(s) 263, 311
SfaNI GCATC 1 cut(s) 818
SfcI CTRYAG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 661
SmoI CTYRAG 1 cut(s) 661
Sse9I AATT 4 cut(s) 276, 316, 473, 854
SsiI CCGC 4 cut(s) 32, 38, 426, 681
SspI AATATT 1 cut(s) 754
StyD4I CCNGG 1 cut(s) 528
StyI CCWWGG 1 cut(s) 709
TaaI ACNGT 3 cut(s) 334, 730, 781
TaiI ACGT 2 cut(s) 499, 543
TaqI TCGA 1 cut(s) 836
TasI AATT 4 cut(s) 276, 316, 473, 854
TatI WGTACW 2 cut(s) 220, 554
TauI GCSGC 3 cut(s) 40, 429, 684
TfiI GAWTC 2 cut(s) 179, 338
Tru1I TTAA 1 cut(s) 252
Tru9I TTAA 1 cut(s) 252
TscAI CASTG 5 cut(s) 196, 582, 637, 733, 786
TseFI GTSAC 3 cut(s) 347, 628, 781
TseI GCWGC 2 cut(s) 144, 485
Tsp45I GTSAC 3 cut(s) 347, 628, 781
TspDTI ATGAA 5 cut(s) 108, 251, 574, 624, 683
TspRI CASTG 5 cut(s) 196, 582, 637, 733, 786
XapI RAATTY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.