Rh6BG207900

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014656
Physical Location & Seq
Reverse (-)
39145816 .. 39169100
23285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG207900.1

Sequence Viewer

Length: 849 bp
ATGAACTCATTTATGGTTAATCGGTGCCCACATCGTTCAGAAATTCAGAGTATGGTGCTTGCTGAAACTGAGAGCACTTGCAATTCAATGTTGGGAACTGTGGATTCTTATGGTCACCTTATTGTATCTAAACTGGACACTACTGGTGAAGATGTGGAGAGGCTTACTTATTCAGTATTGCCTCGTGATTGCGGCATTGGAGAGAGTGGGTGGGCAGGTCTTTGCTTCAATCCAATACAATTGACCACGGCAGCTGTTGCACGTAGCTTCTGTAAAACCATTGATGTTTATGACCAGGATATCCACGTTAGGACATTATGTACACTCTTGTATCCAACATCACTGAGCTTCATGCAAAGTTCGCGTTATGGAAATGAAAGTTCTATATTAGCTGTCACTGAAGGTTGCCAGCTGAGTATATGGGACTTGAGAATGAAAGAAAATGGCGGCTGTCTACAACGAATATGTGGTTCCCTTGGTGATGTCTTCTACACTGTATGCAGTTCCTCAACTGGAAATATTGCAGTCGGTGGAGCTGATCGTACAGTGACAATCTATGATCCTCGCAGATGGGCATCACTATCAAGATGGGTGAACTGCTCGAAATATGAGATAACTGGACTTGCTTTCTCTTCAGTTGACTCCAACCATATCTATATACAAGGGGTTGATTACGAGGTCTTCTGTGGAGACTGGAAAAGAAACAGCAAGGTATTTTCCTTCAGAGGAGATTCAAATTGGCTTGGTTTTAGCAAGTGCCAGAACAGTGATGTTGTCGGTGGATGGTGTGACTCGGGTAGCATCTTTGTGGCTAATGTTGTAGCTGAAGAGGGTGAAACAACCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.08

Weight (kDa)

4.95

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 122 - 226 4.3e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13700 FvH4_2g13700 FvH4_2g13700
malus_domestica MD05G1026600.v1.1
prunus_persica Prupe.8G031100_v2.0.a1
pyrus_communis pycom05g01840
rosa_chinensis RchiOBHm_Chr6g0275381
rosa_laevigata RLG00000013470
rosa_multiflora Rmu_sc0004143.1_g000003
rosa_roxburghii Rroxscaffold_7G00193370
rosa_rugosa Rorug06G0091200 Rorug06G0091200 Rorug06G0091200
rosa_samantha Rh6AG205100 Rh6BG207900 Rh6CG210300
rosa_wichuraiana Rw6G017800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 24
AccI GTMKAC 1 cut(s) 454
AccII CGCG 1 cut(s) 364
AciI CCGC 2 cut(s) 192, 447
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 1 cut(s) 42
AcuI CTGAAG 4 cut(s) 420, 618, 706, 846
AfaI GTAC 2 cut(s) 322, 544
AgsI TTSAA 3 cut(s) 87, 229, 735
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 7 cut(s) 254, 267, 348, 392, 412, 536, 824
AluI AGCT 7 cut(s) 254, 267, 348, 392, 412, 536, 824
Alw21I GWGCWC 1 cut(s) 77
Alw26I GTCTC 1 cut(s) 684
AlwI GGATC 1 cut(s) 554
Ama87I CYCGRG 1 cut(s) 793
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 1 cut(s) 42
AsuHPI GGTGA 5 cut(s) 107, 158, 491, 604, 845
AvaI CYCGRG 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 29
BaeI ACNNNNGTAYC 2 cut(s) 314, 347
BanI GGYRCC 1 cut(s) 24
BauI CACGAG 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 478, 673
Bbv12I GWGCWC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 263
BccI CCATC 3 cut(s) 564, 582, 777
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 296
BciVI GTATCC 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 684
BfuAI ACCTGC 1 cut(s) 206
BfuI GTATCC 1 cut(s) 342
BisI GCNGC 3 cut(s) 193, 252, 448
BlsI GCNGC 3 cut(s) 194, 253, 449
Bme1390I CCNGG 1 cut(s) 296
BmeT110I CYCGRG 1 cut(s) 793
BmiI GGNNCC 2 cut(s) 26, 472
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 2 cut(s) 584, 810
BpiI GAAGAC 2 cut(s) 478, 673
BpuEI CTTGAG 1 cut(s) 448
BsaAI YACGTR 1 cut(s) 263
BsaBI GATNNNNATC 1 cut(s) 574
BsaJI CCNNGG 2 cut(s) 246, 475
Bse1I ACTGG 5 cut(s) 138, 148, 517, 622, 698
Bse8I GATNNNNATC 1 cut(s) 574
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 246, 475
BseGI GGATG 1 cut(s) 788
BseJI GATNNNNATC 1 cut(s) 574
BseMII CTCAG 3 cut(s) 60, 335, 404
BseNI ACTGG 5 cut(s) 138, 148, 517, 622, 698
BseRI GAGGAG 1 cut(s) 741
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 1 cut(s) 263
Bsh1236I CGCG 1 cut(s) 364
BshNI GGYRCC 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 77
BsiHKCI CYCGRG 1 cut(s) 793
BslFI GGGAC 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 684
BsmFI GGGAC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 793
Bsp1286I GDGCHC 2 cut(s) 29, 77
Bsp1407I TGTACA 1 cut(s) 320
Bsp143I GATC 2 cut(s) 538, 559
BspACI CCGC 2 cut(s) 192, 447
BspCNI CTCAG 3 cut(s) 61, 336, 405
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 2 cut(s) 26, 472
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 554
BspT107I GGYRCC 1 cut(s) 24
BsrGI TGTACA 1 cut(s) 320
BsrI ACTGG 5 cut(s) 138, 148, 517, 622, 698
BssECI CCNNGG 2 cut(s) 246, 475
BssMI GATC 2 cut(s) 538, 559
BssSI CACGAG 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 475
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 4 cut(s) 100, 496, 547, 767
Bst6I CTCTTC 2 cut(s) 637, 822
BstAPI GCANNNNNTGC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 320
BstBAI YACGTR 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 60, 410
BstDEI CTNAG 3 cut(s) 69, 344, 413
BstDSI CCRYGG 1 cut(s) 246
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 1 cut(s) 788
BstFNI CGCG 1 cut(s) 364
BstKTI GATC 2 cut(s) 541, 562
BstMAI GTCTC 1 cut(s) 684
BstMBI GATC 2 cut(s) 538, 559
BstMWI GCNNNNNNNGC 2 cut(s) 257, 361
BstNI CCWGG 1 cut(s) 296
BstPI GGTNACC 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 29
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 263
BstV2I GAAGAC 2 cut(s) 478, 673
BsuI GTATCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 788
BtsIMutI CAGTG 5 cut(s) 341, 396, 492, 552, 772
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 60, 410
Csp6I GTAC 2 cut(s) 321, 543
CviAII CATG 2 cut(s) 352, 844
CviQI GTAC 2 cut(s) 321, 543
DdeI CTNAG 3 cut(s) 69, 344, 413
DpnI GATC 2 cut(s) 540, 561
DpnII GATC 2 cut(s) 538, 559
Eam1104I CTCTTC 2 cut(s) 637, 822
EarI CTCTTC 2 cut(s) 637, 822
Eco130I CCWWGG 1 cut(s) 475
Eco32I GATATC 1 cut(s) 301
Eco57I CTGAAG 4 cut(s) 420, 618, 706, 846
Eco88I CYCGRG 1 cut(s) 793
Eco91I GGTNACC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 294
EcoRV GATATC 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 475
ErhI CCWWGG 1 cut(s) 475
FaeI CATG 2 cut(s) 355, 847
FaqI GGGAC 1 cut(s) 437
FatI CATG 2 cut(s) 351, 843
FblI GTMKAC 1 cut(s) 454
Fnu4HI GCNGC 3 cut(s) 193, 252, 448
FokI GGATG 1 cut(s) 795
Fsp4HI GCNGC 3 cut(s) 193, 252, 448
GluI GCNGC 3 cut(s) 193, 252, 448
Hin1II CATG 2 cut(s) 355, 847
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 4 cut(s) 104, 641, 731, 791
HphI GGTGA 5 cut(s) 107, 158, 491, 604, 845
Hpy166II GTNNAC 4 cut(s) 323, 455, 595, 640
Hpy188I TCNGA 3 cut(s) 40, 48, 725
Hpy188III TCNNGA 2 cut(s) 185, 585
Hpy8I GTNNAC 4 cut(s) 323, 455, 595, 640
HpyAV CCTTC 2 cut(s) 395, 730
HpyCH4III ACNGT 4 cut(s) 100, 496, 547, 767
HpyCH4IV ACGT 2 cut(s) 262, 306
HpyCH4V TGCA 5 cut(s) 81, 260, 355, 501, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 361
HpyF3I CTNAG 3 cut(s) 69, 344, 413
HpySE526I ACGT 2 cut(s) 262, 306
Hsp92II CATG 2 cut(s) 355, 847
Kzo9I GATC 2 cut(s) 538, 559
LmnI GCTCC 1 cut(s) 533
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 2 cut(s) 584, 810
MaeII ACGT 2 cut(s) 262, 306
MaeIII GTNAC 4 cut(s) 113, 394, 547, 788
MalI GATC 2 cut(s) 540, 561
MboI GATC 2 cut(s) 538, 559
MboII GAAGA 5 cut(s) 161, 478, 624, 673, 839
MfeI CAATTG 1 cut(s) 239
MhlI GDGCHC 2 cut(s) 29, 77
MluCI AATT 4 cut(s) 42, 82, 239, 736
MlyI GAGTC 2 cut(s) 635, 785
MmeI TCCRAC 2 cut(s) 359, 669
MnlI CCTC 7 cut(s) 153, 192, 517, 573, 670, 719, 823
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 806
MspA1I CMGCKG 2 cut(s) 254, 412
MspR9I CCNGG 1 cut(s) 296
MunI CAATTG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 296
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 257, 361
NdeII GATC 2 cut(s) 538, 559
NlaIII CATG 2 cut(s) 355, 847
NlaIV GGNNCC 2 cut(s) 26, 472
NmuCI GTSAC 4 cut(s) 113, 394, 547, 788
PfeI GAWTC 2 cut(s) 104, 731
PkrI GCNGC 3 cut(s) 194, 253, 449
PleI GAGTC 2 cut(s) 635, 785
PpsI GAGTC 2 cut(s) 635, 785
Ppu21I YACGTR 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 294
PspEI GGTNACC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 26, 472
PvuII CAGCTG 2 cut(s) 254, 412
RsaI GTAC 2 cut(s) 322, 544
RsaNI GTAC 2 cut(s) 321, 543
RseI CAYNNNNRTG 1 cut(s) 806
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 3 cut(s) 193, 252, 448
Sau3AI GATC 2 cut(s) 538, 559
SchI GAGTC 2 cut(s) 635, 785
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 29, 77
SfaNI GCATC 2 cut(s) 584, 810
SmiMI CAYNNNNRTG 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 4 cut(s) 42, 82, 239, 736
SsiI CCGC 2 cut(s) 192, 447
SspI AATATT 1 cut(s) 520
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 1 cut(s) 475
TaaI ACNGT 4 cut(s) 100, 496, 547, 767
TaiI ACGT 2 cut(s) 265, 309
TaqI TCGA 1 cut(s) 602
TasI AATT 4 cut(s) 42, 82, 239, 736
TatI WGTACW 1 cut(s) 320
TauI GCSGC 2 cut(s) 195, 450
TfiI GAWTC 2 cut(s) 104, 731
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 5 cut(s) 348, 403, 499, 552, 772
TseFI GTSAC 4 cut(s) 113, 394, 547, 788
TseI GCWGC 1 cut(s) 251
Tsp45I GTSAC 4 cut(s) 113, 394, 547, 788
TspDTI ATGAA 4 cut(s) 17, 340, 390, 449
TspRI CASTG 5 cut(s) 348, 403, 499, 552, 772
XapI RAATTY 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.