Rorug06G0167600

Domain of unknown function (DUF4228)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017600
Physical Location & Seq
Reverse (-)
24533561 .. 24536617
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0167600.1

Sequence Viewer

Length: 1515 bp
ATGGGCTTACTGGGTCTTGTTGGATTTGCGCTCCAATGCTTTGATGTTCTTGCATGGCCTGTCTTTGCTCTGGTCTATCCTCTGTATTCTTCCATTAAAGCAATCGAGACAAATTCCATTACAGATACTCACAAGATAAATACGTATTGGGTCATCTTCTCATTGATCTTGCTATTTGAGCATGCTTTTATGAAGCTCCTTGAATGGTTCCTGCTCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTATCTGTCCATGCCTCTCCATAAATCCCCAAATTGTTATCTACTTGTTCAACAAGCGGAAGGAGTCCCTTGCGAGAGATAACTTTCTCTCTGAGGTTGAGAGATATGTCAAGGAGAATGGACCTGAAGGTTTGGAAAAATTTATTGCTTGCAAGTCAACGAGGACAAATCTCAATGTAAAAGAGTTCAATGCAGTTTCATCCATGGATAATGAAGCGTCAAAATCCATAAAGCCAAATGGTGGACAGAAAGATATCAAAGCTGTGCAGGTAATGATGAAAAAGAAGGAAACAACTGCTAGCCAAGTTAGTCAGGCAGAGCCTAATCTCACTGTGAATGAAGATAAATTTTCTTCTAGGAAGATGAATGAAAAAGCCATTGAGGCTGCAGCCGACAGAGAAATTCTGAATACTCCACCTCCAAAGAAAGTCCAGAAGGAGTGGACCACAGTCAGTCCGCTACCAACTCAAACTGATGCAACTTTTAATTCCCCTCTCGATGATAATAAACACAAGGCTACATACGAGGTCTTGAAGATAAAGAATGAGGCAGAGCCGAAGCTCACTTGGCCTGAAAGCATTACTGTTGCAGCCATGGAAATATATGAAAAGCCGGTTGAGGTTGGAACAGTTATAGAAGATCCAGAGCCTCCTAAAGAAGTCCAGAAAGAGTGGACTTGTGCTCTGTCTCAGGTAACTACATGTGAAAGAAATTTGAATTCCCACCTGCAAGGGAGAAAACACAAGGCAGCATATGAGGCACTGAAAGCAGGGAACCAGGCATTTGTGTCCAAGATTGCCCCAGCTTCAACTGCAAAAACATCCAATCAACCAAATAAGGAGCCAGGAAAGAGTATTCCGAGCAGTGGATCAAAACAAAAAGTTACTGTAAATGAAAATGTGCAAGGCCAGAAAAATAGTAGTACAGCTCCAATCACAAAGAAGCACTATAAACCGAAAGAGGAGCTAGCAGATGGTGTATCCAGCAATGGCCAGAAAAGGAAAATTGCTATACAGGTCGAGAAGGTACAAAGTCAACAACCGAAGCCAAATGAAGTTCCAAGGGTGAAGAGTTGTCCTTGGCGGTGTGAGATTTGTAGCGTAAGCTGTTCTGATGAGATTGACTTGCTGTCTCATCTCAATGGAAAAAAACACAAGGAAAATGTGCAAGAACAACAAGAGTACCTAATCAGGGTTGGAGAGTTTGACATTTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

504

Amino Acids

56.98

Weight (kDa)

8.66

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 27 - 103 8e-19 TB2/DP1, HVA22 family
zf-met PF12874 459 - 483 2e-08 Zinc-finger of C2H2 type
zf-C2H2_jaz PF12171 459 - 484 5e-06 Zinc-finger double-stranded RNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017600)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g19050
malus_domestica MD05G1175300.v1.1 MD10G1164400.v1.1
prunus_persica Prupe.8G203000_v2.0.a1
rosa_laevigata RLG00000012706
rosa_multiflora Rmu_sc0000686.1_g000018
rosa_roxburghii Rroxscaffold_7G00184280
rosa_rugosa Rorug06G0167600
rosa_samantha Rh6AG280400 Rh6BG280700 Rh6CG282700 Rh6DG275800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1029
Acc36I ACCTGC 2 cut(s) 553, 1029
AccB1I GGYRCC 1 cut(s) 272
AccB7I CCANNNNNTGG 1 cut(s) 536
AciI CCGC 3 cut(s) 352, 752, 1378
AclWI GGATC 2 cut(s) 929, 1171
AcoI YGGCCR 2 cut(s) 218, 1285
AcsI RAATTY 6 cut(s) 112, 434, 641, 696, 1006, 1012
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 3 cut(s) 1219, 1323, 1478
AfiI CCNNNNNNNGG 3 cut(s) 536, 1160, 1486
AflIII ACRYGT 1 cut(s) 995
AgsI TTSAA 6 cut(s) 203, 346, 484, 829, 1012, 1104
AhdI GACNNNNNGTC 1 cut(s) 1423
AjnI CCWGG 2 cut(s) 1071, 1138
AluBI AGCT 7 cut(s) 196, 557, 856, 1100, 1223, 1261, 1401
AluI AGCT 7 cut(s) 196, 557, 856, 1100, 1223, 1261, 1401
Alw21I GWGCWC 1 cut(s) 979
Alw26I GTCTC 3 cut(s) 101, 987, 1431
AlwI GGATC 2 cut(s) 929, 1171
AoxI GGCC 5 cut(s) 56, 218, 863, 1201, 1285
ApeKI GCWGC 4 cut(s) 680, 683, 884, 1043
ApoI RAATTY 6 cut(s) 112, 434, 641, 696, 1006, 1012
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 416, 738
AsuHPI GGTGA 2 cut(s) 265, 1372
AsuNHI GCTAGC 2 cut(s) 593, 1261
AvaII GGWCC 2 cut(s) 416, 738
BaeI ACNNNNGTAYC 2 cut(s) 1460, 1493
BalI TGGCCA 2 cut(s) 220, 1287
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 979
BbvI GCAGC 4 cut(s) 667, 695, 896, 1055
BccI CCATC 2 cut(s) 263, 1262
BciT130I CCWGG 2 cut(s) 1073, 1140
BciVI GTATCC 1 cut(s) 1285
BcoDI GTCTC 3 cut(s) 101, 987, 1431
BfaI CTAG 3 cut(s) 594, 651, 1262
BfmI CTRYAG 1 cut(s) 681
BfuAI ACCTGC 2 cut(s) 553, 1029
BfuI GTATCC 1 cut(s) 1285
BglI GCCNNNNNGGC 1 cut(s) 677
BisI GCNGC 4 cut(s) 681, 684, 885, 1044
BlsI GCNGC 4 cut(s) 682, 685, 886, 1045
Bme1390I CCNGG 2 cut(s) 1073, 1140
Bme18I GGWCC 2 cut(s) 416, 738
BmeRI GACNNNNNGTC 1 cut(s) 1423
BmgT120I GGNCC 2 cut(s) 416, 738
BmiI GGNNCC 4 cut(s) 209, 274, 1070, 1137
BmrFI CCNGG 2 cut(s) 1073, 1140
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 2 cut(s) 246, 760
BmtI GCTAGC 2 cut(s) 597, 1265
BmuI ACTGGG 1 cut(s) 20
BoxI GACNNNNGTC 1 cut(s) 743
BpiI GAAGAC 1 cut(s) 235
BsaAI YACGTR 1 cut(s) 144
BsaJI CCNNGG 4 cut(s) 498, 888, 1355, 1373
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 3 cut(s) 536, 1160, 1486
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 2 cut(s) 15, 1514
Bse3DI GCAATG 1 cut(s) 1288
BseBI CCWGG 2 cut(s) 1073, 1140
BseDI CCNNGG 4 cut(s) 498, 888, 1355, 1373
BseGI GGATG 2 cut(s) 494, 1115
BseLI CCNNNNNNNGG 3 cut(s) 536, 1160, 1486
BseMI GCAATG 1 cut(s) 1288
BseMII CTCAG 2 cut(s) 378, 998
BseNI ACTGG 2 cut(s) 15, 1514
BseRI GAGGAG 1 cut(s) 1271
BseXI GCAGC 4 cut(s) 667, 695, 896, 1055
BseYI CCCAGC 1 cut(s) 1096
BsgI GTGCAG 1 cut(s) 581
BshFI GGCC 5 cut(s) 58, 220, 865, 1203, 1287
BshNI GGYRCC 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 979
BsiSI CCGG 1 cut(s) 908
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 3 cut(s) 536, 1160, 1486
BsmAI GTCTC 3 cut(s) 101, 987, 1431
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 5 cut(s) 58, 220, 865, 1203, 1287
Bsp1286I GDGCHC 1 cut(s) 979
Bsp143I GATC 3 cut(s) 165, 934, 1163
Bsp19I CCATGG 2 cut(s) 498, 888
BspACI CCGC 3 cut(s) 352, 752, 1378
BspANI GGCC 5 cut(s) 58, 220, 865, 1203, 1287
BspCNI CTCAG 2 cut(s) 379, 997
BspLI GGNNCC 4 cut(s) 209, 274, 1070, 1137
BspMAI CTGCAG 1 cut(s) 685
BspMI ACCTGC 2 cut(s) 553, 1029
BspOI GCTAGC 2 cut(s) 597, 1265
BspPI GGATC 2 cut(s) 929, 1171
BspT107I GGYRCC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 1288
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 2 cut(s) 15, 1514
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 4 cut(s) 498, 888, 1355, 1373
BssMI GATC 3 cut(s) 165, 934, 1163
BssT1I CCWWGG 4 cut(s) 498, 888, 1355, 1373
Bst2UI CCWGG 2 cut(s) 1073, 1140
Bst4CI ACNGT 5 cut(s) 628, 745, 880, 925, 1183
Bst6I CTCTTC 1 cut(s) 1358
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 4 cut(s) 183, 445, 595, 1263
BstDEI CTNAG 2 cut(s) 387, 984
BstDSI CCRYGG 2 cut(s) 498, 888
BstF5I GGATG 2 cut(s) 494, 1115
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 3 cut(s) 168, 937, 1166
BstMAI GTCTC 3 cut(s) 101, 987, 1431
BstMBI GATC 3 cut(s) 165, 934, 1163
BstMWI GCNNNNNNNGC 6 cut(s) 178, 677, 862, 1052, 1061, 1106
BstNI CCWGG 2 cut(s) 1073, 1140
BstNSI RCATGY 2 cut(s) 185, 999
BstPAI GACNNNNGTC 1 cut(s) 743
BstSCI CCNGG 2 cut(s) 1071, 1138
BstSFI CTRYAG 1 cut(s) 681
BstSNI TACGTA 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 667, 695, 896, 1055
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 934
BstYI RGATCY 1 cut(s) 934
BsuI GTATCC 1 cut(s) 1285
BsuRI GGCC 5 cut(s) 58, 220, 865, 1203, 1287
BtgI CCRYGG 2 cut(s) 498, 888
BtsCI GGATG 2 cut(s) 494, 1115
BtsI GCAGTG 1 cut(s) 1165
BtsIMutI CAGTG 3 cut(s) 624, 1055, 1165
BveI ACCTGC 2 cut(s) 553, 1029
Cac8I GCNNGC 4 cut(s) 183, 445, 595, 1263
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 1 cut(s) 907
Cfr13I GGNCC 2 cut(s) 416, 738
CseI GACGC 1 cut(s) 501
Csp6I GTAC 3 cut(s) 1218, 1322, 1477
CviAII CATG 6 cut(s) 54, 182, 306, 499, 889, 996
CviQI GTAC 3 cut(s) 1218, 1322, 1477
DdeI CTNAG 2 cut(s) 387, 984
DpnI GATC 3 cut(s) 167, 936, 1165
DpnII GATC 3 cut(s) 165, 934, 1163
DriI GACNNNNNGTC 1 cut(s) 1423
EaeI YGGCCR 2 cut(s) 218, 1285
Eam1104I CTCTTC 1 cut(s) 1358
Eam1105I GACNNNNNGTC 1 cut(s) 1423
EarI CTCTTC 1 cut(s) 1358
Eco105I TACGTA 1 cut(s) 144
Eco130I CCWWGG 4 cut(s) 498, 888, 1355, 1373
Eco32I GATATC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 416, 738
Eco57I CTGAAG 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 1012
EcoRII CCWGG 2 cut(s) 1071, 1138
EcoRV GATATC 1 cut(s) 550
EcoT14I CCWWGG 4 cut(s) 498, 888, 1355, 1373
ErhI CCWWGG 4 cut(s) 498, 888, 1355, 1373
FaeI CATG 6 cut(s) 57, 185, 309, 502, 892, 999
FaqI GGGAC 1 cut(s) 346
FatI CATG 6 cut(s) 53, 181, 305, 498, 888, 995
FauNDI CATATG 1 cut(s) 1048
Fnu4HI GCNGC 4 cut(s) 681, 684, 885, 1044
FokI GGATG 2 cut(s) 481, 1102
Fsp4HI GCNGC 4 cut(s) 681, 684, 885, 1044
FspBI CTAG 3 cut(s) 594, 651, 1262
GlaI GCGC 1 cut(s) 30
GluI GCNGC 4 cut(s) 681, 684, 885, 1044
GsaI CCCAGC 1 cut(s) 1100
HaeIII GGCC 5 cut(s) 58, 220, 865, 1203, 1287
HapII CCGG 1 cut(s) 908
HgaI GACGC 1 cut(s) 501
HhaI GCGC 1 cut(s) 31
Hin1II CATG 6 cut(s) 57, 185, 309, 502, 892, 999
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 2 cut(s) 453, 1331
HindII GTYRAC 2 cut(s) 453, 1331
HinfI GANTC 1 cut(s) 359
HpaII CCGG 1 cut(s) 908
HphI GGTGA 2 cut(s) 265, 1372
Hpy166II GTNNAC 5 cut(s) 453, 539, 738, 969, 1331
Hpy188I TCNGA 4 cut(s) 388, 702, 1155, 1408
Hpy188III TCNNGA 7 cut(s) 106, 727, 791, 826, 938, 958, 1315
Hpy8I GTNNAC 5 cut(s) 453, 539, 738, 969, 1331
HpyAV CCTTC 5 cut(s) 349, 416, 574, 724, 1312
HpyCH4III ACNGT 5 cut(s) 628, 745, 880, 925, 1183
HpyCH4IV ACGT 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 6 cut(s) 178, 677, 862, 1052, 1061, 1106
HpyF3I CTNAG 2 cut(s) 387, 984
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 6 cut(s) 57, 185, 309, 502, 892, 999
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 3 cut(s) 165, 934, 1163
LmnI GCTCC 5 cut(s) 36, 201, 1135, 1228, 1258
Lsp1109I GCAGC 4 cut(s) 667, 695, 896, 1055
LweI GCATC 2 cut(s) 246, 760
MaeI CTAG 3 cut(s) 594, 651, 1262
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 2 cut(s) 988, 1177
MalI GATC 3 cut(s) 167, 936, 1165
MboI GATC 3 cut(s) 165, 934, 1163
MboII GAAGA 9 cut(s) 81, 148, 235, 639, 647, 667, 841, 944, 1375
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 1 cut(s) 979
MlsI TGGCCA 2 cut(s) 220, 1287
MluCI AATT 9 cut(s) 112, 327, 434, 641, 696, 781, 1006, 1012, 1299
MluNI TGGCCA 2 cut(s) 220, 1287
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 2 cut(s) 898, 1471
Mox20I TGGCCA 2 cut(s) 220, 1287
MscI TGGCCA 2 cut(s) 220, 1287
MseI TTAA 2 cut(s) 96, 780
MslI CAYNNNNRTG 2 cut(s) 267, 1434
Msp20I TGGCCA 2 cut(s) 220, 1287
MspI CCGG 1 cut(s) 908
MspR9I CCNGG 2 cut(s) 1073, 1140
MvaI CCWGG 2 cut(s) 1073, 1140
MwoI GCNNNNNNNGC 6 cut(s) 178, 677, 862, 1052, 1061, 1106
NcoI CCATGG 2 cut(s) 498, 888
NdeI CATATG 1 cut(s) 1048
NdeII GATC 3 cut(s) 165, 934, 1163
NheI GCTAGC 2 cut(s) 593, 1261
NlaIII CATG 6 cut(s) 57, 185, 309, 502, 892, 999
NlaIV GGNNCC 4 cut(s) 209, 274, 1070, 1137
NspI RCATGY 2 cut(s) 185, 999
PaeI GCATGC 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 1029
PciI ACATGT 1 cut(s) 995
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 4 cut(s) 682, 685, 886, 1045
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Ppu21I YACGTR 1 cut(s) 144
PscI ACATGT 1 cut(s) 995
PshAI GACNNNNGTC 1 cut(s) 743
Psp6I CCWGG 2 cut(s) 1071, 1138
PspFI CCCAGC 1 cut(s) 1096
PspGI CCWGG 2 cut(s) 1071, 1138
PspN4I GGNNCC 4 cut(s) 209, 274, 1070, 1137
PspPI GGNCC 2 cut(s) 416, 738
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 934
RsaI GTAC 3 cut(s) 1219, 1323, 1478
RsaNI GTAC 3 cut(s) 1218, 1322, 1477
RseI CAYNNNNRTG 2 cut(s) 267, 1434
SaqAI TTAA 2 cut(s) 96, 780
SatI GCNGC 4 cut(s) 681, 684, 885, 1044
Sau3AI GATC 3 cut(s) 165, 934, 1163
Sau96I GGNCC 2 cut(s) 416, 738
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 1073, 1140
SduI GDGCHC 1 cut(s) 979
SfaNI GCATC 2 cut(s) 246, 760
SfcI CTRYAG 1 cut(s) 681
SinI GGWCC 2 cut(s) 416, 738
SmiMI CAYNNNNRTG 2 cut(s) 267, 1434
SnaBI TACGTA 1 cut(s) 144
SphI GCATGC 1 cut(s) 185
Sse9I AATT 9 cut(s) 112, 327, 434, 641, 696, 781, 1006, 1012, 1299
SsiI CCGC 3 cut(s) 352, 752, 1378
SspMI CTAG 3 cut(s) 594, 651, 1262
StyD4I CCNGG 2 cut(s) 1071, 1138
StyI CCWWGG 4 cut(s) 498, 888, 1355, 1373
TaaI ACNGT 5 cut(s) 628, 745, 880, 925, 1183
TaiI ACGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 105, 792, 1314
TasI AATT 9 cut(s) 112, 327, 434, 641, 696, 781, 1006, 1012, 1299
TatI WGTACW 1 cut(s) 1217
Tru1I TTAA 2 cut(s) 96, 780
Tru9I TTAA 2 cut(s) 96, 780
TscAI CASTG 3 cut(s) 631, 1062, 1165
TseI GCWGC 4 cut(s) 680, 683, 884, 1043
TspRI CASTG 3 cut(s) 631, 1062, 1165
Van91I CCANNNNNTGG 1 cut(s) 536
VpaK11BI GGWCC 2 cut(s) 416, 738
XapI RAATTY 6 cut(s) 112, 434, 641, 696, 1006, 1012
XceI RCATGY 2 cut(s) 185, 999
XspI CTAG 3 cut(s) 594, 651, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.