Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008249

Physical Location & Seq

Genomic Coordinates Reverse (-)

35782419 .. 35782808

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0224000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGGAGGGATCGGTGTTGTAGTAAGTGATTCTGAAGGGCTGATTGTTGGTGGCTCTTGTTGCAAAGTTTCGTCAGTTAGTACTCCTATTGTAGTTGAAGTTCTTGCTGGGAGGGCTGTATGTGCTTGGGCTGTGGAGTTCAAAAAGGCACTTATTATCTTTGAAAGTGATTGTCTTCAGTTGGTCAATTCTTTGAAGTCTAAAGAGGAAGATCATTCCATGATTGGGAGGGTGGTTGATGACATTTTGGTCCACTTAGCTTCTATTCCTAATTCTTTCTTTCAACATGTTTACAGAGAGTCCAATTTGGAAGCACACAAGCTTGCAAAGCTTGCGTTGTATTCTAATGTGTTTGCTAATTGGAAGGGGTTTTATACCTTCCACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

129

Amino Acids

14.13

Weight (kDa)

6.27

Isoelectric Point (pI)

23.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 112	1.3e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35960 AT5G35960
fragaria_vesca	FvH4_2g24300
malus_domestica	MD03G1272700.v1.1 MD11G1293600.v1.1
prunus_persica	Prupe.8G249200_v2.0.a1
pyrus_communis	pycom03g21720 pycom11g25980
rosa_chinensis	RchiOBHm_Chr6g0292171
rosa_laevigata	RLG00000012056
rosa_multiflora	Rmu_sc0000502.1_g000005 Rmu_sc0006021.1_g000005
rosa_roxburghii	Rroxscaffold_7G00175390
rosa_rugosa	Rorug06G0017700 Rorug06G0017800 Rorug06G0017900 Rorug06G0223900 Rorug06G0224000 Rorug06G0224100 Rorug06G0224200
rosa_samantha	Rh6AG337300 Rh6DG337500
rosa_wichuraiana	Rw6G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AclWI	GGATC	1 cut(s)	17
AcuI	CTGAAG	2 cut(s)	54, 161
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	5 cut(s)	98, 142, 164, 196, 284
AluBI	AGCT	3 cut(s)	260, 322, 331
AluI	AGCT	3 cut(s)	260, 322, 331
AlwI	GGATC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseYI	CCCAGC	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	225
Bsp143I	GATC	2 cut(s)	9, 211
BspPI	GGATC	1 cut(s)	17
BssMI	GATC	2 cut(s)	9, 211
BstAPI	GCANNNNNTGC	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	324, 333
BstDEI	CTNAG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	12, 214
BstMBI	GATC	2 cut(s)	9, 211
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 113, 122, 328, 332
BstNSI	RCATGY	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	167
Cac8I	GCNNGC	2 cut(s)	324, 333
Cfr13I	GGNCC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	2 cut(s)	220, 287
CviJI	RGCY	7 cut(s)	40, 54, 116, 131, 260, 322, 331
CviKI_1	RGCY	7 cut(s)	40, 54, 116, 131, 260, 322, 331
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	2 cut(s)	11, 213
DpnII	GATC	2 cut(s)	9, 211
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	54, 161
FaeI	CATG	2 cut(s)	223, 290
FaiI	YATR	4 cut(s)	121, 221, 288, 375
FatI	CATG	2 cut(s)	219, 286
GsaI	CCCAGC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	223, 290
HindIII	AAGCTT	2 cut(s)	320, 329
HinfI	GANTC	2 cut(s)	29, 299
Hpy166II	GTNNAC	2 cut(s)	253, 292
Hpy188I	TCNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	253, 292
HpyAV	CCTTC	3 cut(s)	29, 358, 388
HpyCH4V	TGCA	2 cut(s)	63, 326
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 113, 122, 328, 332
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	2 cut(s)	223, 290
Kzo9I	GATC	2 cut(s)	9, 211
LpnPI	CCDG	1 cut(s)	93
MalI	GATC	2 cut(s)	11, 213
MboI	GATC	2 cut(s)	9, 211
MboII	GAAGA	2 cut(s)	167, 221
MluCI	AATT	4 cut(s)	187, 271, 304, 358
MlyI	GAGTC	1 cut(s)	308
MnlI	CCTC	3 cut(s)	105, 199, 222
MwoI	GCNNNNNNNGC	5 cut(s)	60, 113, 122, 328, 332
NdeII	GATC	2 cut(s)	9, 211
NlaIII	CATG	2 cut(s)	223, 290
NspI	RCATGY	1 cut(s)	290
PciI	ACATGT	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	29
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
PscI	ACATGT	1 cut(s)	286
PspFI	CCCAGC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	250
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
Sau3AI	GATC	2 cut(s)	9, 211
Sau96I	GGNCC	1 cut(s)	250
ScaI	AGTACT	1 cut(s)	82
SchI	GAGTC	1 cut(s)	308
SetI	ASST	4 cut(s)	262, 324, 333, 380
SgeI	CNNG	9 cut(s)	69, 116, 120, 138, 232, 299, 331, 335, 344
SinI	GGWCC	1 cut(s)	250
Sse9I	AATT	4 cut(s)	187, 271, 304, 358
TasI	AATT	4 cut(s)	187, 271, 304, 358
TatI	WGTACW	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	250
XceI	RCATGY	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.