Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008249

Physical Location & Seq

Genomic Coordinates Forward (+)

35811540 .. 35818344

Gene Structure 6805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0224200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2370 bp

ATGGTGGCGCCGCCGCCCAAGTACGTGAGCTCGGTAGGCGATCTGAAGCGCCGGGAGTTGCAGAAGAAGAAAGCCAAGTCGGGAGGGTTCGAGTCTCTCAACCTAAGCCCCAATGTCTTCAAAGCAATCAAGCGCAAGGGCTACAAAGTCCCCACACCCATTCAGCGCAAGACCATGCCCCTTATTCTCTCCGGAAACGACGTCGTCGCCATGGCCCGAACCGGTTCCGGCAAAACGGCGGCGTTTCTCATCCCCATGCTCGAGCGTTTGAAGGAGCACGTCCCCCAGGGCGGTGTTAGGGCTCTCATTCTCTCCCCCACTAGAGACTTGGCTCTTCAGACCCTCAAGTTTACCACAGAGCTCGCCAATTTCATGGATCTTCGGATTAGTTTACTAGTTGGTGGTGATAGCATGGAAAGTCAGTTTGAGGAGCTGGCTCAAAACCCGGATATTATAATTGCAACCCCTGGCAGGCTGATTCACCATTTAACTGAGATCGATGAGATGTCGCTTCGCTCTGTGGAGTATGTTGTTTTTGATGAGGCCGATTGTCTCTTTGGCATGGGTTTCGCTGAGCAATTGCATAAGATTCTTGCGCAGCTGAGTGATAACCGTCAGACCTTGCTCTTTAGTGCAACATTACCTAGCGCGCTCGCAGAGTTTGCGAAGGCTGGTCTGCAGGACCCTCGCCTTGTGCGGCTTGATTTGGATACTAAGATTAGCCCCGACTTGAAGCTTATGTTTTTCACCCTGCGACAGGAGGAGAAGCATGCGGCAATACTTTATTTGGTAAGGGAGCATATTCGTTCCGATGAGCAGACGTTGATATTTGTATCCACTAAGCATCATGTGGAGTTCCTGAATATCTTGTTTAGAGAAGAGGGCATTGTGCCTTCTGTGTGTTATGGTGACATGGATCACGATGCTCGGAAAATTCATATATCAAAGTTTAAGCACAGAAAGACTATGTTGTTAATTGTCACTGATGTTGCAGCCAGGGGAATTGATATTCCGTTGCTTGACAATGTTATCAATTGGGATTTTCCCCCAAAGCCTAAACTTTTTGTCCATAGAGTAGGTCGAGCTGCAAGGGCTGGTCGGACTGGGACTGCGTTCTCTCTTGTGACATCTGAAGACATACCTAACCTTTTAGATCTTCATCTGTTTCTTTCAAAACCGATTAGGCCGGCACCTACCGAGGAGGAGGTTTTACAGGATATGGATGGAGTAATGTCCAAGATTGATCAAGCAGTTGCAAATGGAGAAAGTATATATGGGCGTTTCCCCCAAACAGCTATTGATCTGGTTTCAGACAGGGTTAGAGAGATAATTGATTCTTCTTCAGAACTCAGCCTTTTGCTGAAAACTTGCGCAAATGCATTTCGCTTGTATTCAAAGACAAAGCCCTCCCCTTCAAGGGAATCTATTAAAAGAGCAAAAGATTTACCTCGGGAAGGGTTGCATCCGATATTTAAAAACACACTTGAGGGTGGAGAGTTGAAGGCATTGGCATTTTCTGAACGGTTGAAGACATTCAGGCCTGAGCAGACCATTCTAGAAGCTGAAGGAAAAGCTGCTAAATCAAAGAATGTGAAGGGTCCTTCTCGTCAGTGGGTTGATGTAATGAAGAAAAAAAGAGCTATTCATGAAGGGATAATTAGTTTAGTGCATCAGCAAAATCAGGAACGTTCCAATAATCATGCTGAAGAGGAAGATGAATCTGAGATTATTCCCTTAAAGAAAAAGAGAAAGAAAGAATCTTCCGGTTCTAAAAGTAAGGCAACGAGCTTCAAGGATGAGGATTACTTTATAAGTTCCATACCCACAAATCATCATATGGAAGCGGGACTCTCAGTGAGAGGGAATGAGAACTTTGACTCTAATAGGTTGGAAGCTGCTGTTCTAGATCTAGTTGCAGATGATAATGTGGGCATGAAGAAACAGAAATCTGTATTTCATTGGGATAAGAGTGGGAAAAAGTACATAAAGCTAACTTCACGCGACCGAGTGACTGCTAGTGGCAAGGTAAAGACAGAGAGTGGTGCCAAAGGAAAACTTGAGAAAACTGGAATATACAATAAGTGGAAAGCACGTTCACACAATAAAGTATCTTTCAAAGGCACTGACGAAGGGAATGCTGAGGAAGCCACAGGCAACCGGAGATGGGAGGGGAACAGGGGGAACCCACGGGGAGGCAGGAAGCAGCAGTCTATTCCTAATGCTCATGTGCGTTCTGAAATCAAAGACTTGGATCAAGTTCGGAAGGAGAGGCAGAAAAAGGCAGATAGAATCTCTCATTTGAAGAGCAAATCTACAAAGGGGGGTAAAAAATTTGGTAAAAATGGAAAAAGAGGAAAGGCAAAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

789

Amino Acids

88.57

Weight (kDa)

9.72

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	52 - 220	7.2e-51	DEAD/DEAH box helicase
Helicase_C	PF00271	258 - 366	1.1e-23	Helicase conserved C-terminal domain
DBP10CT	PF08147	636 - 697	2.4e-09	DBP10CT (NUC160) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35960 AT5G35960
fragaria_vesca	FvH4_2g24300
malus_domestica	MD03G1272700.v1.1 MD11G1293600.v1.1
prunus_persica	Prupe.8G249200_v2.0.a1
pyrus_communis	pycom03g21720 pycom11g25980
rosa_chinensis	RchiOBHm_Chr6g0292171
rosa_laevigata	RLG00000012056
rosa_multiflora	Rmu_sc0000502.1_g000005 Rmu_sc0006021.1_g000005
rosa_roxburghii	Rroxscaffold_7G00175390
rosa_rugosa	Rorug06G0017700 Rorug06G0017800 Rorug06G0017900 Rorug06G0223900 Rorug06G0224000 Rorug06G0224100 Rorug06G0224200
rosa_samantha	Rh6AG337300 Rh6DG337500
rosa_wichuraiana	Rw6G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	455, 1811
AatII	GACGTC	1 cut(s)	204
Acc16I	TGCGCA	2 cut(s)	597, 1372
AccB1I	GGYRCC	3 cut(s)	7, 1189, 2042
AccII	CGCG	2 cut(s)	650, 2001
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	7 cut(s)	11, 14, 239, 291, 697, 773, 1844
AclI	AACGTT	1 cut(s)	1687
AclWI	GGATC	3 cut(s)	384, 924, 2259
AcsI	RAATTY	2 cut(s)	933, 2330
AcuI	CTGAAG	6 cut(s)	65, 320, 1152, 1326, 1584, 1725
AcyI	GRCGYC	2 cut(s)	8, 201
AfaI	GTAC	2 cut(s)	23, 1982
AfiI	CCNNNNNNNGG	8 cut(s)	290, 471, 757, 1416, 1417, 1454, 2164, 2192
AgeI	ACCGGT	1 cut(s)	221
AhlI	ACTAGT	1 cut(s)	394
AjiI	CACGTC	1 cut(s)	280
AjnI	CCWGG	3 cut(s)	285, 466, 995
AloI	GAACNNNNNNTCC	2 cut(s)	2077, 2109
Alw21I	GWGCWC	3 cut(s)	32, 279, 363
Alw26I	GTCTC	3 cut(s)	99, 318, 557
AlwI	GGATC	3 cut(s)	384, 924, 2259
Ama87I	CYCGRG	2 cut(s)	260, 1449
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	4 cut(s)	213, 543, 1184, 1538
ApeKI	GCWGC	6 cut(s)	598, 992, 1085, 1574, 1895, 2203
ApoI	RAATTY	2 cut(s)	933, 2330
AsiGI	ACCGGT	1 cut(s)	221
Asp700I	GAANNNNTTC	2 cut(s)	223, 1532
AspLEI	GCGC	8 cut(s)	10, 51, 135, 168, 598, 650, 652, 1373
AspS9I	GGNCC	3 cut(s)	214, 682, 1598
AsuC2I	CCSGG	2 cut(s)	53, 446
AsuHPI	GGTGA	4 cut(s)	416, 473, 739, 920
AvaI	CYCGRG	2 cut(s)	260, 1449
AvaII	GGWCC	2 cut(s)	682, 1598
BanI	GGYRCC	3 cut(s)	7, 1189, 2042
BanII	GRGCYC	3 cut(s)	32, 304, 363
BbsI	GAAGAC	3 cut(s)	109, 1140, 1535
Bbv12I	GWGCWC	3 cut(s)	32, 279, 363
BbvCI	CCTCAGC	1 cut(s)	2139
BbvI	GCAGC	6 cut(s)	610, 1004, 1072, 1561, 1882, 2215
BccI	CCATC	2 cut(s)	1217, 2157
BceAI	ACGGC	1 cut(s)	252
BcgI	CGANNNNNNTGC	6 cut(s)	550, 584, 668, 702, 2117, 2151
BciT130I	CCWGG	3 cut(s)	287, 468, 997
BciVI	GTATCC	2 cut(s)	703, 844
BclI	TGATCA	1 cut(s)	1243
BcnI	CCSGG	2 cut(s)	53, 446
BcoDI	GTCTC	3 cut(s)	99, 318, 557
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
BfmI	CTRYAG	1 cut(s)	677
BfoI	RGCGCY	2 cut(s)	11, 52
BfuI	GTATCC	2 cut(s)	703, 844
BglII	AGATCT	2 cut(s)	1153, 1906
BlpI	GCTNAGC	1 cut(s)	573
Bme1390I	CCNGG	5 cut(s)	53, 287, 446, 468, 997
Bme18I	GGWCC	2 cut(s)	682, 1598
BmeT110I	CYCGRG	2 cut(s)	260, 1449
BmgBI	CACGTC	1 cut(s)	280
BmgT120I	GGNCC	3 cut(s)	214, 682, 1598
BmiI	GGNNCC	7 cut(s)	9, 226, 684, 1191, 1599, 2044, 2183
BmrFI	CCNGG	5 cut(s)	53, 287, 446, 468, 997
BmrI	ACTGGG	1 cut(s)	1113
BmsI	GCATC	4 cut(s)	853, 913, 1471, 1678
BmuI	ACTGGG	1 cut(s)	1113
BpiI	GAAGAC	3 cut(s)	109, 1140, 1535
Bpu10I	CCTNAGC	3 cut(s)	104, 1542, 2139
Bpu1102I	GCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	3 cut(s)	329, 1505, 2078
BpuMI	CCSGG	2 cut(s)	53, 446
Bsa29I	ATCGAT	1 cut(s)	498
BsaAI	YACGTR	1 cut(s)	25
BsaBI	GATNNNNATC	1 cut(s)	1158
BsaHI	GRCGYC	2 cut(s)	8, 201
BsaJI	CCNNGG	8 cut(s)	210, 285, 286, 466, 996, 1197, 1448, 2186
BsaWI	WCCGGW	4 cut(s)	191, 221, 1763, 2157
Bsc4I	CCNNNNNNNGG	8 cut(s)	290, 471, 757, 1416, 1417, 1454, 2164, 2192
Bse118I	RCCGGY	2 cut(s)	221, 1186
Bse1I	ACTGG	2 cut(s)	1108, 2071
Bse8I	GATNNNNATC	1 cut(s)	1158
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	3 cut(s)	287, 468, 997
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	8 cut(s)	210, 285, 286, 466, 996, 1197, 1448, 2186
BseGI	GGATG	4 cut(s)	249, 1228, 1462, 1801
BseJI	GATNNNNATC	1 cut(s)	1158
BseLI	CCNNNNNNNGG	8 cut(s)	290, 471, 757, 1416, 1417, 1454, 2164, 2192
BseMII	CTCAG	8 cut(s)	483, 564, 593, 1363, 1533, 1713, 1866, 2130
BseNI	ACTGG	2 cut(s)	1108, 2071
BsePI	GCGCGC	1 cut(s)	648
BseRI	GAGGAG	4 cut(s)	443, 776, 1214, 1217
BseXI	GCAGC	6 cut(s)	610, 1004, 1072, 1561, 1882, 2215
Bsh1236I	CGCG	2 cut(s)	650, 2001
Bsh1285I	CGRYCG	1 cut(s)	2005
BshFI	GGCC	4 cut(s)	215, 545, 1186, 1540
BshNI	GGYRCC	3 cut(s)	7, 1189, 2042
BshTI	ACCGGT	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	498
BsiEI	CGRYCG	1 cut(s)	2005
BsiHKAI	GWGCWC	3 cut(s)	32, 279, 363
BsiHKCI	CYCGRG	2 cut(s)	260, 1449
BsiSI	CCGG	8 cut(s)	52, 192, 222, 228, 446, 1187, 1764, 2158
BslFI	GGGAC	4 cut(s)	134, 266, 1120, 1860
BslI	CCNNNNNNNGG	8 cut(s)	290, 471, 757, 1416, 1417, 1454, 2164, 2192
BsmAI	GTCTC	3 cut(s)	99, 318, 557
BsmFI	GGGAC	4 cut(s)	134, 266, 1120, 1860
BsmI	GAATGC	1 cut(s)	2140
BsnI	GGCC	4 cut(s)	215, 545, 1186, 1540
BsoBI	CYCGRG	2 cut(s)	260, 1449
Bsp1286I	GDGCHC	4 cut(s)	32, 279, 304, 363
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	9 cut(s)	40, 376, 495, 916, 1153, 1243, 1300, 1906, 2251
Bsp1720I	GCTNAGC	1 cut(s)	573
Bsp19I	CCATGG	1 cut(s)	210
BspACI	CCGC	7 cut(s)	11, 14, 239, 291, 697, 773, 1844
BspANI	GGCC	4 cut(s)	215, 545, 1186, 1540
BspCNI	CTCAG	8 cut(s)	484, 565, 594, 1362, 1534, 1714, 1865, 2131
BspDI	ATCGAT	1 cut(s)	498
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	2 cut(s)	650, 2001
BspHI	TCATGA	1 cut(s)	1645
BspLI	GGNNCC	7 cut(s)	9, 226, 684, 1191, 1599, 2044, 2183
BspMAI	CTGCAG	1 cut(s)	681
BspPI	GGATC	3 cut(s)	384, 924, 2259
BspQI	GCTCTTC	2 cut(s)	339, 2297
BspT107I	GGYRCC	3 cut(s)	7, 1189, 2042
BsrFI	RCCGGY	2 cut(s)	221, 1186
BsrI	ACTGG	2 cut(s)	1108, 2071
BssAI	RCCGGY	2 cut(s)	221, 1186
BssECI	CCNNGG	8 cut(s)	210, 285, 286, 466, 996, 1197, 1448, 2186
BssHII	GCGCGC	1 cut(s)	648
BssMI	GATC	9 cut(s)	40, 376, 495, 916, 1153, 1243, 1300, 1906, 2251
BssNI	GRCGYC	2 cut(s)	8, 201
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	3 cut(s)	287, 468, 997
Bst4CI	ACNGT	2 cut(s)	614, 1524
Bst6I	CTCTTC	4 cut(s)	339, 873, 1701, 2297
BstACI	GRCGYC	2 cut(s)	8, 201
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	25
BstC8I	GCNNGC	7 cut(s)	363, 435, 473, 650, 654, 771, 1188
BstDSI	CCRYGG	2 cut(s)	210, 2186
BstENI	CCTNNNNNAGG	2 cut(s)	755, 1452
BstF5I	GGATG	4 cut(s)	249, 1228, 1462, 1801
BstFNI	CGCG	2 cut(s)	650, 2001
BstH2I	RGCGCY	2 cut(s)	11, 52
BstHHI	GCGC	8 cut(s)	10, 51, 135, 168, 598, 650, 652, 1373
BstKTI	GATC	9 cut(s)	43, 379, 498, 919, 1156, 1246, 1303, 1909, 2254
BstMAI	GTCTC	3 cut(s)	99, 318, 557
BstMBI	GATC	9 cut(s)	40, 376, 495, 916, 1153, 1243, 1300, 1906, 2251
BstMCI	CGRYCG	1 cut(s)	2005
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 662, 1091, 2144
BstNI	CCWGG	3 cut(s)	287, 468, 997
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	5 cut(s)	51, 285, 444, 466, 995
BstSFI	CTRYAG	1 cut(s)	677
BstUI	CGCG	2 cut(s)	650, 2001
BstV1I	GCAGC	6 cut(s)	610, 1004, 1072, 1561, 1882, 2215
BstV2I	GAAGAC	3 cut(s)	109, 1140, 1535
BstX2I	RGATCY	3 cut(s)	376, 1153, 1906
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	3 cut(s)	376, 1153, 1906
Bsu15I	ATCGAT	1 cut(s)	498
BsuI	GTATCC	2 cut(s)	703, 844
BsuRI	GGCC	4 cut(s)	215, 545, 1186, 1540
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	2 cut(s)	210, 2186
BtrI	CACGTC	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	249, 1228, 1462, 1801
BtsIMutI	CAGTG	4 cut(s)	981, 1616, 1860, 2121
Cac8I	GCNNGC	7 cut(s)	363, 435, 473, 650, 654, 771, 1188
CciI	TCATGA	1 cut(s)	1645
CfoI	GCGC	8 cut(s)	10, 51, 135, 168, 598, 650, 652, 1373
Cfr10I	RCCGGY	2 cut(s)	221, 1186
Cfr13I	GGNCC	3 cut(s)	214, 682, 1598
ClaI	ATCGAT	1 cut(s)	498
Csp6I	GTAC	2 cut(s)	22, 1981
CspAI	ACCGGT	1 cut(s)	221
CviQI	GTAC	2 cut(s)	22, 1981
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	9 cut(s)	42, 378, 497, 918, 1155, 1245, 1302, 1908, 2253
DpnII	GATC	9 cut(s)	40, 376, 495, 916, 1153, 1243, 1300, 1906, 2251
DraI	TTTAAA	1 cut(s)	1474
Eam1104I	CTCTTC	4 cut(s)	339, 873, 1701, 2297
EarI	CTCTTC	4 cut(s)	339, 873, 1701, 2297
Ecl136II	GAGCTC	2 cut(s)	30, 361
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	1540
Eco24I	GRGCYC	3 cut(s)	32, 304, 363
Eco47I	GGWCC	2 cut(s)	682, 1598
Eco53kI	GAGCTC	2 cut(s)	30, 361
Eco57I	CTGAAG	6 cut(s)	65, 320, 1152, 1326, 1584, 1725
Eco88I	CYCGRG	2 cut(s)	260, 1449
EcoICRI	GAGCTC	2 cut(s)	30, 361
EcoNI	CCTNNNNNAGG	2 cut(s)	755, 1452
EcoO109I	RGGNCCY	2 cut(s)	682, 1598
EcoRII	CCWGG	3 cut(s)	285, 466, 995
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	1381
EcoT38I	GRGCYC	3 cut(s)	32, 304, 363
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	210
FalI	AAGNNNNNCTT	2 cut(s)	2040, 2072
FaqI	GGGAC	4 cut(s)	134, 266, 1120, 1860
FauI	CCCGC	1 cut(s)	1837
FauNDI	CATATG	1 cut(s)	1836
FbaI	TGATCA	1 cut(s)	1243
FokI	GGATG	4 cut(s)	236, 1235, 1449, 1808
FriOI	GRGCYC	3 cut(s)	32, 304, 363
FspBI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
FspI	TGCGCA	2 cut(s)	597, 1372
GlaI	GCGC	8 cut(s)	9, 50, 134, 167, 597, 649, 651, 1372
HaeII	RGCGCY	2 cut(s)	11, 52
HaeIII	GGCC	4 cut(s)	215, 545, 1186, 1540
HapII	CCGG	8 cut(s)	52, 192, 222, 228, 446, 1187, 1764, 2158
HhaI	GCGC	8 cut(s)	10, 51, 135, 168, 598, 650, 652, 1373
Hin1I	GRCGYC	2 cut(s)	8, 201
Hin6I	GCGC	8 cut(s)	8, 49, 133, 166, 596, 648, 650, 1371
HinP1I	GCGC	8 cut(s)	8, 49, 133, 166, 596, 648, 650, 1371
HindIII	AAGCTT	1 cut(s)	734
HpaII	CCGG	8 cut(s)	52, 192, 222, 228, 446, 1187, 1764, 2158
HphI	GGTGA	4 cut(s)	416, 473, 739, 920
Hpy166II	GTNNAC	3 cut(s)	351, 392, 2096
Hpy188III	TCNNGA	9 cut(s)	81, 192, 859, 920, 1451, 1556, 1646, 1682, 1904
Hpy8I	GTNNAC	3 cut(s)	351, 392, 2096
Hpy99I	CGWCG	3 cut(s)	203, 206, 209
HpyCH4III	ACNGT	2 cut(s)	614, 1524
HpyCH4IV	ACGT	6 cut(s)	24, 201, 279, 821, 1687, 2092
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 662, 1091, 2144
HpySE526I	ACGT	6 cut(s)	24, 201, 279, 821, 1687, 2092
Hsp92I	GRCGYC	2 cut(s)	8, 201
HspAI	GCGC	8 cut(s)	8, 49, 133, 166, 596, 648, 650, 1371
KasI	GGCGCC	1 cut(s)	7
Kpn2I	TCCGGA	1 cut(s)	191
KroI	GCCGGC	1 cut(s)	1186
KroNI	GCCGGC	1 cut(s)	1188
Ksp22I	TGATCA	1 cut(s)	1243
Kzo9I	GATC	9 cut(s)	40, 376, 495, 916, 1153, 1243, 1300, 1906, 2251
LguI	GCTCTTC	2 cut(s)	339, 2297
LmnI	GCTCC	3 cut(s)	274, 430, 796
Lsp1109I	GCAGC	6 cut(s)	610, 1004, 1072, 1561, 1882, 2215
LweI	GCATC	4 cut(s)	853, 913, 1471, 1678
MaeI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
MaeII	ACGT	6 cut(s)	24, 201, 279, 821, 1687, 2092
MaeIII	GTNAC	4 cut(s)	908, 979, 1123, 2008
MalI	GATC	9 cut(s)	42, 378, 497, 918, 1155, 1245, 1302, 1908, 2253
MboI	GATC	9 cut(s)	40, 376, 495, 916, 1153, 1243, 1300, 1906, 2251
MfeI	CAATTG	2 cut(s)	578, 1033
MflI	RGATCY	3 cut(s)	376, 1153, 1906
MhlI	GDGCHC	4 cut(s)	32, 279, 304, 363
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	101, 1842, 1871
MmeI	TCCRAC	2 cut(s)	1079, 1869
Mph1103I	ATGCAT	1 cut(s)	1381
MroI	TCCGGA	1 cut(s)	191
MroNI	GCCGGC	1 cut(s)	1186
MroXI	GAANNNNTTC	2 cut(s)	223, 1532
MseI	TTAA	6 cut(s)	488, 951, 974, 1428, 1473, 1736
MslI	CAYNNNNRTG	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	8 cut(s)	52, 192, 222, 228, 446, 1187, 1764, 2158
MspR9I	CCNGG	5 cut(s)	53, 287, 446, 468, 997
MunI	CAATTG	2 cut(s)	578, 1033
Mva1269I	GAATGC	1 cut(s)	2140
MvaI	CCWGG	3 cut(s)	287, 468, 997
MvnI	CGCG	2 cut(s)	650, 2001
MwoI	GCNNNNNNNGC	4 cut(s)	36, 662, 1091, 2144
NaeI	GCCGGC	1 cut(s)	1188
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	2 cut(s)	53, 446
NcoI	CCATGG	1 cut(s)	210
NdeI	CATATG	1 cut(s)	1836
NdeII	GATC	9 cut(s)	40, 376, 495, 916, 1153, 1243, 1300, 1906, 2251
NgoMIV	GCCGGC	1 cut(s)	1186
NlaIV	GGNNCC	7 cut(s)	9, 226, 684, 1191, 1599, 2044, 2183
NmuCI	GTSAC	4 cut(s)	908, 979, 1123, 2008
NsbI	TGCGCA	2 cut(s)	597, 1372
NsiI	ATGCAT	1 cut(s)	1381
NspI	RCATGY	1 cut(s)	773
PaeI	GCATGC	1 cut(s)	773
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	1645
PasI	CCCWGGG	1 cut(s)	286
PauI	GCGCGC	1 cut(s)	648
PceI	AGGCCT	1 cut(s)	1540
PciSI	GCTCTTC	2 cut(s)	339, 2297
PctI	GAATGC	1 cut(s)	2140
PdiI	GCCGGC	1 cut(s)	1188
PdmI	GAANNNNTTC	2 cut(s)	223, 1532
PfeI	GAWTC	7 cut(s)	478, 589, 1334, 1421, 1718, 1757, 2289
PflFI	GACNNNGTC	1 cut(s)	203
PinAI	ACCGGT	1 cut(s)	221
PleI	GAGTC	3 cut(s)	100, 1842, 1871
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	3 cut(s)	100, 1842, 1871
Ppu21I	YACGTR	1 cut(s)	25
PpuMI	RGGWCCY	2 cut(s)	682, 1598
PsiI	TTATAA	2 cut(s)	455, 1811
Psp124BI	GAGCTC	2 cut(s)	32, 363
Psp1406I	AACGTT	1 cut(s)	1687
Psp5II	RGGWCCY	2 cut(s)	682, 1598
Psp6I	CCWGG	3 cut(s)	285, 466, 995
PspGI	CCWGG	3 cut(s)	285, 466, 995
PspN4I	GGNNCC	7 cut(s)	9, 226, 684, 1191, 1599, 2044, 2183
PspPI	GGNCC	3 cut(s)	214, 682, 1598
PspPPI	RGGWCCY	2 cut(s)	682, 1598
PspXI	VCTCGAGB	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	681
PsuI	RGATCY	3 cut(s)	376, 1153, 1906
PsyI	GACNNNGTC	1 cut(s)	203
PteI	GCGCGC	1 cut(s)	648
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	23, 1982
RsaNI	GTAC	2 cut(s)	22, 1981
RseI	CAYNNNNRTG	1 cut(s)	254
SacI	GAGCTC	2 cut(s)	32, 363
SapI	GCTCTTC	2 cut(s)	339, 2297
SaqAI	TTAA	6 cut(s)	488, 951, 974, 1428, 1473, 1736
Sau3AI	GATC	9 cut(s)	40, 376, 495, 916, 1153, 1243, 1300, 1906, 2251
Sau96I	GGNCC	3 cut(s)	214, 682, 1598
SchI	GAGTC	3 cut(s)	101, 1842, 1871
ScrFI	CCNGG	5 cut(s)	53, 287, 446, 468, 997
SduI	GDGCHC	4 cut(s)	32, 279, 304, 363
SfaNI	GCATC	4 cut(s)	853, 913, 1471, 1678
SfcI	CTRYAG	1 cut(s)	677
SfoI	GGCGCC	1 cut(s)	9
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	2 cut(s)	682, 1598
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	254
SmlI	CTYRAG	4 cut(s)	260, 344, 1484, 2057
SmoI	CTYRAG	4 cut(s)	260, 344, 1484, 2057
SpeI	ACTAGT	1 cut(s)	394
SphI	GCATGC	1 cut(s)	773
SseBI	AGGCCT	1 cut(s)	1540
SsiI	CCGC	7 cut(s)	11, 14, 239, 291, 697, 773, 1844
SspDI	GGCGCC	1 cut(s)	7
SspMI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
SstI	GAGCTC	2 cut(s)	32, 363
StuI	AGGCCT	1 cut(s)	1540
StyD4I	CCNGG	5 cut(s)	51, 285, 444, 466, 995
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	614, 1524
TaiI	ACGT	6 cut(s)	27, 204, 282, 824, 1690, 2095
TaqI	TCGA	4 cut(s)	90, 261, 498, 1081
TaqII	GACCGA	1 cut(s)	2019
TatI	WGTACW	1 cut(s)	1980
TauI	GCSGC	5 cut(s)	13, 16, 242, 700, 776
TfiI	GAWTC	7 cut(s)	478, 589, 1334, 1421, 1718, 1757, 2289
Tru1I	TTAA	6 cut(s)	488, 951, 974, 1428, 1473, 1736
Tru9I	TTAA	6 cut(s)	488, 951, 974, 1428, 1473, 1736
TscAI	CASTG	4 cut(s)	988, 1616, 1860, 2128
TseFI	GTSAC	4 cut(s)	908, 979, 1123, 2008
TseI	GCWGC	6 cut(s)	598, 992, 1085, 1574, 1895, 2203
Tsp45I	GTSAC	4 cut(s)	908, 979, 1123, 2008
TspDTI	ATGAA	9 cut(s)	361, 926, 1148, 1634, 1640, 1662, 1731, 1946, 1949
TspGWI	ACGGA	1 cut(s)	1002
TspRI	CASTG	4 cut(s)	988, 1616, 1860, 2128
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	2 cut(s)	682, 1598
XagI	CCTNNNNNAGG	2 cut(s)	755, 1452
XapI	RAATTY	2 cut(s)	933, 2330
XbaI	TCTAGA	2 cut(s)	1555, 1903
XceI	RCATGY	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XhoI	CTCGAG	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	223, 1532
XspI	CTAG	7 cut(s)	321, 395, 645, 1556, 1904, 1910, 2016
ZraI	GACGTC	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	1381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.