Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008249

Physical Location & Seq

Genomic Coordinates Forward (+)

35791985 .. 35794289

Gene Structure 2305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0224100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGCTAGCTTTCATGTTTGTTCTGATCCATTCTACAGGTCATGGAGGCTCAAGAACTGCAAAATACCTGAAAGAGAACCTTTTCAACAATTTAAGTGGTCACCCAGAATTTATCAAAGACACAAAGATAGCTATTGTTGAAGTATTTAAACAGACAGATGTTGAATACATCAATGAAGAGAAAGGTGATCAAAAAGACACTGGCTCAACTGCATCAACCGCTTTGTTGTTAGGGGATCGGCTTTTCATTGCAAATGTTGGTGATTCAAGAGTAGTCGCCGGGAGAGCTGGTTCAGCTATCACCTTGTCCAATGACCATAAACCTGATAGATCTGACAAACGTCAAAGAATTGAAGAGGCCGGAGGTTTTGTTATGTGGGCAGGAACATGGAGGGTTGGTGGTGTTCTTGCTGTTTCCCGTTCATTTGGTGACAAAGAAGAAGAGATTAATGGCGTAGATTTCATAATTATCGCAAGTGATAGACTTTGGAATGTCATATCAAACAATGTGAGTGCAAGCATTAAATTATTTTTTCTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

180

Amino Acids

19.78

Weight (kDa)

6.09

Isoelectric Point (pI)

25.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	12 - 146	4.1e-33	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008249)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35960 AT5G35960
fragaria_vesca	FvH4_2g24300
malus_domestica	MD03G1272700.v1.1 MD11G1293600.v1.1
prunus_persica	Prupe.8G249200_v2.0.a1
pyrus_communis	pycom03g21720 pycom11g25980
rosa_chinensis	RchiOBHm_Chr6g0292171
rosa_laevigata	RLG00000012056
rosa_multiflora	Rmu_sc0000502.1_g000005 Rmu_sc0006021.1_g000005
rosa_roxburghii	Rroxscaffold_7G00175390
rosa_rugosa	Rorug06G0017700 Rorug06G0017800 Rorug06G0017900 Rorug06G0223900 Rorug06G0224000 Rorug06G0224100 Rorug06G0224200
rosa_samantha	Rh6AG337300 Rh6DG337500
rosa_wichuraiana	Rw6G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	2 cut(s)	19, 243
AcsI	RAATTY	1 cut(s)	107
AgsI	TTSAA	5 cut(s)	85, 140, 164, 267, 353
AloI	GAACNNNNNNTCC	2 cut(s)	274, 306
AluBI	AGCT	4 cut(s)	8, 131, 287, 296
AluI	AGCT	4 cut(s)	8, 131, 287, 296
AlwI	GGATC	2 cut(s)	19, 243
AoxI	GGCC	1 cut(s)	357
ApoI	RAATTY	1 cut(s)	107
AseI	ATTAAT	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	5 cut(s)	92, 197, 272, 292, 440
AsuNHI	GCTAGC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	280
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	221
BmtI	GCTAGC	1 cut(s)	8
BoxI	GACNNNNGTC	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	280
BsaXI	ACNNNNNCTCC	6 cut(s)	274, 304, 354, 382, 384, 412
Bse1I	ACTGG	1 cut(s)	205
Bse3DI	GCAATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	279, 360
BsnI	GGCC	1 cut(s)	359
Bsp143I	GATC	4 cut(s)	24, 187, 235, 329
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	1 cut(s)	359
BspOI	GCTAGC	1 cut(s)	8
BspPI	GGATC	2 cut(s)	19, 243
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	4 cut(s)	24, 187, 235, 329
Bst6I	CTCTTC	3 cut(s)	171, 348, 435
BstC8I	GCNNGC	2 cut(s)	6, 517
BstEII	GGTNACC	1 cut(s)	98
BstKTI	GATC	4 cut(s)	27, 190, 238, 332
BstMBI	GATC	4 cut(s)	24, 187, 235, 329
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 284, 293
BstPAI	GACNNNNGTC	1 cut(s)	339
BstPI	GGTNACC	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	6, 517
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	3 cut(s)	13, 41, 387
CviJI	RGCY	8 cut(s)	8, 48, 131, 204, 241, 287, 296, 359
CviKI_1	RGCY	8 cut(s)	8, 48, 131, 204, 241, 287, 296, 359
DpnI	GATC	4 cut(s)	26, 189, 237, 331
DpnII	GATC	4 cut(s)	24, 187, 235, 329
DraI	TTTAAA	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	171, 348, 435
EarI	CTCTTC	3 cut(s)	171, 348, 435
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
FaeI	CATG	3 cut(s)	16, 44, 390
FaiI	YATR	8 cut(s)	14, 42, 318, 374, 388, 464, 497, 541
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FatI	CATG	3 cut(s)	12, 40, 386
FbaI	TGATCA	1 cut(s)	187
FspBI	CTAG	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	279, 360
Hin1II	CATG	3 cut(s)	16, 44, 390
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	2 cut(s)	279, 360
HphI	GGTGA	5 cut(s)	92, 197, 272, 292, 440
Hpy188I	TCNGA	2 cut(s)	24, 334
Hpy188III	TCNNGA	2 cut(s)	51, 267
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	59, 212, 251, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 284, 293
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	16, 44, 390
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	24, 187, 235, 329
LpnPI	CCDG	9 cut(s)	21, 80, 117, 186, 273, 292, 336, 366, 373
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	2 cut(s)	98, 428
MalI	GATC	4 cut(s)	26, 189, 237, 331
MboI	GATC	4 cut(s)	24, 187, 235, 329
MboII	GAAGA	4 cut(s)	188, 365, 449, 452
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	5 cut(s)	88, 107, 348, 465, 524
MnlI	CCTC	4 cut(s)	38, 349, 356, 384
MroXI	GAANNNNTTC	1 cut(s)	80
MseI	TTAA	4 cut(s)	92, 147, 447, 522
MspI	CCGG	2 cut(s)	279, 360
MspR9I	CCNGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	218, 284, 293
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	4 cut(s)	24, 187, 235, 329
NheI	GCTAGC	1 cut(s)	4
NlaIII	CATG	3 cut(s)	16, 44, 390
NmuCI	GTSAC	2 cut(s)	98, 428
PdmI	GAANNNNTTC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	263
PshAI	GACNNNNGTC	1 cut(s)	339
PshBI	ATTAAT	1 cut(s)	447
PspEI	GGTNACC	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	329
SaqAI	TTAA	4 cut(s)	92, 147, 447, 522
Sau3AI	GATC	4 cut(s)	24, 187, 235, 329
ScrFI	CCNGG	1 cut(s)	280
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	5 cut(s)	88, 107, 348, 465, 524
SsiI	CCGC	1 cut(s)	219
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	1 cut(s)	278
TaiI	ACGT	1 cut(s)	343
TasI	AATT	5 cut(s)	88, 107, 348, 465, 524
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	4 cut(s)	92, 147, 447, 522
Tru9I	TTAA	4 cut(s)	92, 147, 447, 522
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	98, 428
Tsp45I	GTSAC	2 cut(s)	98, 428
TspDTI	ATGAA	4 cut(s)	189, 235, 411, 451
TspRI	CASTG	1 cut(s)	205
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	80
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.