Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009362

Physical Location & Seq

Genomic Coordinates Reverse (-)

37804880 .. 37805772

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCCTCTCATCGCTTCCCAGCCTGTGTCTTCTCACTCTTGCTTTTCACCTTCTCGCTTATGAGCTCCAAAACACTGGTCCAAGGAGCTCGCTGTCTTCTCGAGACTCACTTGCCTGAGGTGCCTGAGCTTCCAAAGCCTGAATTGCCCCATCTTCCTAGTCTTCCAACCTTGCCAAAGCCTGAACTGCCACAGCTGCCGAAGCCCGAGCTGCCACCATTGCCAAAGCCGGAGCTTCCACAACTGCCAAAGCCAGAGCTGCCATCATTGCCTAAGCCCGAGTTGCCACCATTGCCCCATGTACCAACTTTGCCAAAGCCTGAAGGCCTCAAGTTGGCTGAACAACCCCATCTCCCAACATTGCCTGAGCTTCCACCATTGCCAAAGCAGGAGGAGCTGCCATCATTGCCGAAGCCCGAACTCCCATCACTTCCGAATTTCCCAAGTTTGCCAAAGCCTGAGTTACCAACACTACCTAAGCCTGAATTGCCAACTTTACCACCACTGCCTCATCTCCCCGAGCTCCCTAAGACCGAATTGCCCATCATCCCCACGCTCCCGAAAGACAAAACCGTCCTTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

194

Amino Acids

21.37

Weight (kDa)

6.31

Isoelectric Point (pI)

81.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47750
fragaria_vesca	FvH4_2g25330 FvH4_2g25330 FvH4_2g25330
malus_domestica	MD03G1284700.v1.1 MD11G1304200.v1.1
prunus_persica	Prupe.8G257800_v2.0.a1 Prupe.8G257800_v2.0.a1 Prupe.8G257800_v2.0.a1 Prupe.8G257800_v2.0.a1
pyrus_communis	pycom03g22560
rosa_chinensis	RchiOBHm_Chr6g0293491
rosa_laevigata	RLG00000011945
rosa_multiflora	Rmu_sc0006269.1_g000011
rosa_roxburghii	Rroxscaffold_7G00174130
rosa_rugosa	Rorug06G0235800 Rorug06G0235900
rosa_samantha	Rh6AG348600 Rh6BG356100 Rh6CG362700 Rh6DG349700
rosa_wichuraiana	Rw6G030320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	334
Alw21I	GWGCWC	3 cut(s)	68, 91, 525
Alw26I	GTCTC	1 cut(s)	98
Ama87I	CYCGRG	4 cut(s)	101, 206, 278, 518
AoxI	GGCC	2 cut(s)	3, 325
ApeKI	GCWGC	4 cut(s)	196, 211, 259, 397
ApoI	RAATTY	1 cut(s)	436
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	4 cut(s)	101, 206, 278, 518
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	117
BanI	GGYRCC	1 cut(s)	121
BanII	GRGCYC	3 cut(s)	68, 91, 525
BbsI	GAAGAC	3 cut(s)	22, 89, 155
Bbv12I	GWGCWC	3 cut(s)	68, 91, 525
BbvI	GCAGC	4 cut(s)	183, 198, 246, 384
BccI	CCATC	6 cut(s)	159, 271, 357, 409, 433, 551
BcoDI	GTCTC	1 cut(s)	98
BfaI	CTAG	1 cut(s)	159
BisI	GCNGC	4 cut(s)	197, 212, 260, 398
BlsI	GCNGC	4 cut(s)	198, 213, 261, 399
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	4 cut(s)	101, 206, 278, 518
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	123
BpiI	GAAGAC	3 cut(s)	22, 89, 155
Bpu10I	CCTNAGC	4 cut(s)	126, 273, 366, 477
BpuEI	CTTGAG	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	81
Bse21I	CCTNAGG	1 cut(s)	117
Bse3DI	GCAATG	6 cut(s)	218, 266, 290, 359, 377, 404
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	546
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	6 cut(s)	218, 266, 290, 359, 377, 404
BseMII	CTCAG	4 cut(s)	108, 117, 357, 450
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	4 cut(s)	183, 198, 246, 384
BseYI	CCCAGC	1 cut(s)	19
BshFI	GGCC	2 cut(s)	5, 327
BshNI	GGYRCC	1 cut(s)	121
BsiHKAI	GWGCWC	3 cut(s)	68, 91, 525
BsiHKCI	CYCGRG	4 cut(s)	101, 206, 278, 518
BsiSI	CCGG	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	5, 327
BsoBI	CYCGRG	4 cut(s)	101, 206, 278, 518
Bsp1286I	GDGCHC	3 cut(s)	68, 91, 525
BspANI	GGCC	2 cut(s)	5, 327
BspCNI	CTCAG	4 cut(s)	109, 118, 358, 451
BspLI	GGNNCC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	121
BsrDI	GCAATG	6 cut(s)	218, 266, 290, 359, 377, 404
BsrI	ACTGG	1 cut(s)	81
BssECI	CCNNGG	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	574
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	7 cut(s)	117, 126, 273, 366, 459, 477, 528
BstF5I	GGATG	1 cut(s)	546
BstMAI	GTCTC	1 cut(s)	98
BstV1I	GCAGC	4 cut(s)	183, 198, 246, 384
BstV2I	GAAGAC	3 cut(s)	22, 89, 155
BstXI	CCANNNNNNTGG	1 cut(s)	76
Bsu36I	CCTNAGG	1 cut(s)	117
BsuRI	GGCC	2 cut(s)	5, 327
BtsCI	GGATG	1 cut(s)	546
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	2 cut(s)	74, 503
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	302
CviAII	CATG	1 cut(s)	299
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	7 cut(s)	117, 126, 273, 366, 459, 477, 528
DrdI	GACNNNNNNGTC	1 cut(s)	572
DseDI	GACNNNNNNGTC	1 cut(s)	572
Ecl136II	GAGCTC	3 cut(s)	66, 89, 523
Eco130I	CCWWGG	1 cut(s)	82
Eco147I	AGGCCT	1 cut(s)	327
Eco24I	GRGCYC	3 cut(s)	68, 91, 525
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	3 cut(s)	66, 89, 523
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	117
Eco88I	CYCGRG	4 cut(s)	101, 206, 278, 518
EcoICRI	GAGCTC	3 cut(s)	66, 89, 523
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	3 cut(s)	68, 91, 525
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	1 cut(s)	302
FaiI	YATR	2 cut(s)	62, 300
FatI	CATG	1 cut(s)	298
Fnu4HI	GCNGC	4 cut(s)	197, 212, 260, 398
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	3 cut(s)	68, 91, 525
Fsp4HI	GCNGC	4 cut(s)	197, 212, 260, 398
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	4 cut(s)	197, 212, 260, 398
GsaI	CCCAGC	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	5, 327
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	1 cut(s)	302
HinfI	GANTC	1 cut(s)	106
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	3 cut(s)	101, 103, 559
HpyAV	CCTTC	2 cut(s)	61, 317
HpyCH4III	ACNGT	1 cut(s)	574
HpyF3I	CTNAG	7 cut(s)	117, 126, 273, 366, 459, 477, 528
Hsp92II	CATG	1 cut(s)	302
LmnI	GCTCC	6 cut(s)	71, 86, 232, 394, 528, 561
Lsp1109I	GCAGC	4 cut(s)	183, 198, 246, 384
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	462
MboII	GAAGA	4 cut(s)	22, 89, 146, 155
MhlI	GDGCHC	3 cut(s)	68, 91, 525
MluCI	AATT	4 cut(s)	143, 436, 485, 536
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	5 cut(s)	16, 112, 338, 385, 519
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	1 cut(s)	230
NlaIII	CATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	123
PaeR7I	CTCGAG	1 cut(s)	101
PceI	AGGCCT	1 cut(s)	327
PkrI	GCNGC	4 cut(s)	198, 213, 261, 399
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	3 cut(s)	68, 91, 525
PspFI	CCCAGC	1 cut(s)	19
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SacI	GAGCTC	3 cut(s)	68, 91, 525
SatI	GCNGC	4 cut(s)	197, 212, 260, 398
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	3 cut(s)	68, 91, 525
Sfr274I	CTCGAG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	79
SlaI	CTCGAG	1 cut(s)	101
SmlI	CTYRAG	2 cut(s)	101, 329
SmoI	CTYRAG	2 cut(s)	101, 329
Sse9I	AATT	4 cut(s)	143, 436, 485, 536
SseBI	AGGCCT	1 cut(s)	327
SspMI	CTAG	1 cut(s)	159
SstI	GAGCTC	3 cut(s)	68, 91, 525
StuI	AGGCCT	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	574
TaqI	TCGA	1 cut(s)	102
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	4 cut(s)	143, 436, 485, 536
TscAI	CASTG	2 cut(s)	81, 510
TseI	GCWGC	4 cut(s)	196, 211, 259, 397
TspRI	CASTG	2 cut(s)	81, 510
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	101
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.