Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009362

Physical Location & Seq

Genomic Coordinates Reverse (-)

55065829 .. 55068932

Gene Structure 3104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG349700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGTCCTCTAGTTCTTTCTTCTGCCCGGATTATTGTTCACTGACAATTAATATGGATGGGAAGAAGCTCGAGTACAAAGGTGAGGAGGCATTGAAGGAGATTGAGAGGCTCACTTCCAAGGCTGATAAAGTCCAGCTAAACATTTTGAAAGAGATCTTAACCAGAAATGTGGAAACTGAGTATCTGAGCAAGTACATGAGGGGATCGAGAGAGGTGTCAGACTTCAAGCAGTGTGTCCCTGTCATTACTTATAATGGTATTCAACCTTATATCCAGAGAATTGCTAATGGTGAAGACTCTTCTCTCATAACCGGTCACCCAATTACTGAAATGCTATGCAGCTCAGGAACTTCAGGGAGAGAGCCTAAGATAACGCCGACAATCGCAGAAGATCTCGATCGTAGAACCTTTCTCTACAATCTCATTATGCCAATTATCAACCAATATGTCCCTGATCTGGACAAGGGCAAGGCCATGTTCCTCTACTTCGTCAAGGCAGAGATGTCGACGCCGTGCGGCTTACCGGCACGGACGGTGCTCACCAGCTACTACAAGAGCAACCACTTCAAGTGCCGAGGCGAAGACCCTTTCAACAACTGCACCAGCCCTGACCAGGCCATTTTATGCAACGACAGCAACCAAAGCATGTATTGCCAGCTCCTCTCCGGCCTACTCCACCGCCACCAAGTCCTGAGGCTCGGGGCCGTTTTCGCCTCTGCTTTTCTTCGAGCCATTTCGTTCCTCGAACGAAACTGGGTCAGTTTCTGCAATGACATACGTACCGGGAAGTTGGATCCCCTAATCACAGACCCTGATTGCCGCACATCAATGGCTAAAATTCTCTCCTCCCCTGATCCTGATCTGGCTGACGAGATCAGCAGCATCTGTAGCCTTCATTCGTGGAAGGGAATTGTGTGCCAGCTCTGGCCTAAGGCCAAGTACATTGAGGCCGTCGTCACGGGGTCCATGGCGCAGTACATACCGGCTTTGGAGTATTACAGTGATGGGAAGCTTCCATTAGTCTGCACCATGTACGCATCTTCAGAGTGTTACTTCGGTGTGAACTTGAAACCCTTGTGTGATCCTGCTGACGTAGCGTTCACCCTGATGCCCAATATGGGGTATTTTGAGTTTATACCGTTGGGAGGAGGAGAGAATGGGACAAGGGTGATGGACATTGATGAGGATGAGGATGTGCTTAGTGATAAGCTTGTGGACTTGGTGCATGTGAAGCTTGGCTTTTACTATGAATTGGTGGTCACAACCTTTGCTGGTAAAAATATCTTTGCCCCAATTTTGTTATATTTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

437

Amino Acids

49.06

Weight (kDa)

5.18

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GH3	PF03321	31 - 336	2.2e-114	GH3 family N-terminal domain
GH3_M	PF23571	367 - 425	5e-10	GH3 family central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009362)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47750
fragaria_vesca	FvH4_2g25330 FvH4_2g25330 FvH4_2g25330
malus_domestica	MD03G1284700.v1.1 MD11G1304200.v1.1
prunus_persica	Prupe.8G257800_v2.0.a1 Prupe.8G257800_v2.0.a1 Prupe.8G257800_v2.0.a1 Prupe.8G257800_v2.0.a1
pyrus_communis	pycom03g22560
rosa_chinensis	RchiOBHm_Chr6g0293491
rosa_laevigata	RLG00000011945
rosa_multiflora	Rmu_sc0006269.1_g000011
rosa_roxburghii	Rroxscaffold_7G00174130
rosa_rugosa	Rorug06G0235800 Rorug06G0235900
rosa_samantha	Rh6AG348600 Rh6BG356100 Rh6CG362700 Rh6DG349700
rosa_wichuraiana	Rw6G030320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	3 cut(s)	516, 679, 820
AclWI	GGATC	5 cut(s)	211, 788, 801, 848, 1076
AcsI	RAATTY	1 cut(s)	837
AcuI	CTGAAG	2 cut(s)	336, 1026
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	6 cut(s)	74, 194, 781, 941, 977, 1034
AfiI	CCNNNNNNNGG	5 cut(s)	457, 613, 1118, 1119, 1145
AgeI	ACCGGT	1 cut(s)	311
AgsI	TTSAA	7 cut(s)	94, 148, 226, 263, 568, 592, 1069
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	9 cut(s)	67, 136, 342, 546, 658, 922, 1012, 1210, 1234
AluI	AGCT	9 cut(s)	67, 136, 342, 546, 658, 922, 1012, 1210, 1234
Alw21I	GWGCWC	1 cut(s)	540
AlwI	GGATC	5 cut(s)	211, 788, 801, 848, 1076
AlwNI	CAGNNNCTG	3 cut(s)	765, 812, 885
Ama87I	CYCGRG	2 cut(s)	68, 698
AoxI	GGCC	7 cut(s)	471, 615, 667, 702, 926, 933, 948
ApeKI	GCWGC	2 cut(s)	339, 879
ApoI	RAATTY	1 cut(s)	837
AseI	ATTAAT	1 cut(s)	48
AsiGI	ACCGGT	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	973
AspS9I	GGNCC	2 cut(s)	702, 963
AsuC2I	CCSGG	2 cut(s)	26, 784
AsuHPI	GGTGA	6 cut(s)	92, 302, 308, 532, 1093, 1180
AvaI	CYCGRG	2 cut(s)	68, 698
AvaII	GGWCC	1 cut(s)	963
AxyI	CCTNAGG	2 cut(s)	692, 930
BaeI	ACNNNNGTAYC	2 cut(s)	763, 796
BamHI	GGATCC	1 cut(s)	793
BarI	GAAGNNNNNNTAC	2 cut(s)	56, 88
BbsI	GAAGAC	2 cut(s)	300, 588
Bbv12I	GWGCWC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	351, 891
BccI	CCATC	3 cut(s)	50, 998, 1165
BceAI	ACGGC	3 cut(s)	496, 689, 935
BcgI	CGANNNNNNTGC	2 cut(s)	486, 520
BciT130I	CCWGG	1 cut(s)	614
BcnI	CCSGG	2 cut(s)	26, 784
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	1 cut(s)	886
BglII	AGATCT	2 cut(s)	153, 391
BisI	GCNGC	4 cut(s)	340, 517, 820, 880
BlsI	GCNGC	4 cut(s)	341, 518, 821, 881
Bme1390I	CCNGG	3 cut(s)	26, 614, 784
Bme18I	GGWCC	1 cut(s)	963
BmeT110I	CYCGRG	2 cut(s)	68, 698
BmgT120I	GGNCC	2 cut(s)	702, 963
BmiI	GGNNCC	3 cut(s)	703, 795, 964
BmrFI	CCNGG	3 cut(s)	26, 614, 784
BmrI	ACTGGG	1 cut(s)	763
BmsI	GCATC	3 cut(s)	891, 1046, 1098
BmuI	ACTGGG	1 cut(s)	763
BpiI	GAAGAC	2 cut(s)	300, 588
Bpu10I	CCTNAGC	1 cut(s)	343
BpuMI	CCSGG	2 cut(s)	26, 784
BsaAI	YACGTR	1 cut(s)	779
BsaBI	GATNNNNATC	2 cut(s)	396, 858
BsaHI	GRCGYC	1 cut(s)	509
BsaJI	CCNNGG	3 cut(s)	117, 574, 966
BsaWI	WCCGGW	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	5 cut(s)	457, 613, 1118, 1119, 1145
Bse118I	RCCGGY	3 cut(s)	311, 523, 982
Bse1I	ACTGG	1 cut(s)	758
Bse21I	CCTNAGG	2 cut(s)	692, 930
Bse3DI	GCAATG	1 cut(s)	775
Bse8I	GATNNNNATC	2 cut(s)	396, 858
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	3 cut(s)	117, 574, 966
BseGI	GGATG	3 cut(s)	61, 1192, 1198
BseJI	GATNNNNATC	2 cut(s)	396, 858
BseLI	CCNNNNNNNGG	5 cut(s)	457, 613, 1118, 1119, 1145
BseMI	GCAATG	1 cut(s)	775
BseMII	CTCAG	4 cut(s)	168, 176, 357, 683
BseNI	ACTGG	1 cut(s)	758
BseRI	GAGGAG	5 cut(s)	98, 650, 835, 1161, 1164
BseXI	GCAGC	2 cut(s)	351, 891
BsgI	GTGCAG	2 cut(s)	583, 1009
Bsh1285I	CGRYCG	1 cut(s)	400
BshFI	GGCC	7 cut(s)	473, 617, 669, 704, 928, 935, 950
BshTI	ACCGGT	1 cut(s)	311
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	540
BsiHKCI	CYCGRG	2 cut(s)	68, 698
BsiSI	CCGG	6 cut(s)	26, 312, 524, 666, 783, 983
BslFI	GGGAC	3 cut(s)	221, 434, 1174
BslI	CCNNNNNNNGG	5 cut(s)	457, 613, 1118, 1119, 1145
BsmFI	GGGAC	3 cut(s)	221, 434, 1174
BsnI	GGCC	7 cut(s)	473, 617, 669, 704, 928, 935, 950
BsoBI	CYCGRG	2 cut(s)	68, 698
Bsp1286I	GDGCHC	1 cut(s)	540
Bsp19I	CCATGG	1 cut(s)	966
BspACI	CCGC	3 cut(s)	516, 679, 820
BspANI	GGCC	7 cut(s)	473, 617, 669, 704, 928, 935, 950
BspCNI	CTCAG	4 cut(s)	169, 177, 356, 684
BspLI	GGNNCC	3 cut(s)	703, 795, 964
BspPI	GGATC	5 cut(s)	211, 788, 801, 848, 1076
BsrDI	GCAATG	1 cut(s)	775
BsrFI	RCCGGY	3 cut(s)	311, 523, 982
BsrI	ACTGG	1 cut(s)	758
BssAI	RCCGGY	3 cut(s)	311, 523, 982
BssECI	CCNNGG	3 cut(s)	117, 574, 966
BssNI	GRCGYC	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	117, 966
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	535, 1001, 1140
Bst6I	CTCTTC	1 cut(s)	304
BstACI	GRCGYC	1 cut(s)	509
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	656, 920
BstDEI	CTNAG	7 cut(s)	177, 185, 343, 366, 692, 930, 1199
BstDSI	CCRYGG	1 cut(s)	966
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	3 cut(s)	61, 1192, 1198
BstHHI	GCGC	1 cut(s)	973
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	7 cut(s)	633, 642, 651, 710, 888, 1094, 1231
BstNI	CCWGG	1 cut(s)	614
BstNSI	RCATGY	2 cut(s)	649, 1229
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	3 cut(s)	24, 612, 782
BstSFI	CTRYAG	1 cut(s)	886
BstSNI	TACGTA	1 cut(s)	779
BstV1I	GCAGC	2 cut(s)	351, 891
BstV2I	GAAGAC	2 cut(s)	300, 588
BstX2I	RGATCY	3 cut(s)	153, 391, 793
BstXI	CCANNNNNNTGG	1 cut(s)	169
BstYI	RGATCY	3 cut(s)	153, 391, 793
Bsu36I	CCTNAGG	2 cut(s)	692, 930
BsuRI	GGCC	7 cut(s)	473, 617, 669, 704, 928, 935, 950
BtgI	CCRYGG	1 cut(s)	966
BtsCI	GGATG	3 cut(s)	61, 1192, 1198
BtsI	GCAGTG	1 cut(s)	236
BtsIMutI	CAGTG	3 cut(s)	38, 236, 1006
Cac8I	GCNNGC	2 cut(s)	656, 920
CaiI	CAGNNNCTG	3 cut(s)	765, 812, 885
CfoI	GCGC	1 cut(s)	973
Cfr10I	RCCGGY	3 cut(s)	311, 523, 982
Cfr13I	GGNCC	2 cut(s)	702, 963
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	6 cut(s)	73, 193, 780, 940, 976, 1033
CspAI	ACCGGT	1 cut(s)	311
CviAII	CATG	6 cut(s)	196, 475, 646, 967, 1030, 1226
CviQI	GTAC	6 cut(s)	73, 193, 780, 940, 976, 1033
DdeI	CTNAG	7 cut(s)	177, 185, 343, 366, 692, 930, 1199
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco105I	TACGTA	1 cut(s)	779
Eco130I	CCWWGG	2 cut(s)	117, 966
Eco47I	GGWCC	1 cut(s)	963
Eco57I	CTGAAG	2 cut(s)	336, 1026
Eco81I	CCTNAGG	2 cut(s)	692, 930
Eco88I	CYCGRG	2 cut(s)	68, 698
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	612
EcoT14I	CCWWGG	2 cut(s)	117, 966
ErhI	CCWWGG	2 cut(s)	117, 966
FaeI	CATG	6 cut(s)	199, 478, 649, 970, 1033, 1229
FalI	AAGNNNNNCTT	2 cut(s)	1223, 1255
FaqI	GGGAC	3 cut(s)	221, 434, 1174
FatI	CATG	6 cut(s)	195, 474, 645, 966, 1029, 1225
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	4 cut(s)	340, 517, 820, 880
FokI	GGATG	3 cut(s)	68, 1199, 1205
Fsp4HI	GCNGC	4 cut(s)	340, 517, 820, 880
FspBI	CTAG	1 cut(s)	9
GlaI	GCGC	1 cut(s)	972
GluI	GCNGC	4 cut(s)	340, 517, 820, 880
HaeIII	GGCC	7 cut(s)	473, 617, 669, 704, 928, 935, 950
HapII	CCGG	6 cut(s)	26, 312, 524, 666, 783, 983
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	1 cut(s)	973
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	6 cut(s)	199, 478, 649, 970, 1033, 1229
Hin6I	GCGC	1 cut(s)	971
HinP1I	GCGC	1 cut(s)	971
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HindIII	AAGCTT	3 cut(s)	1010, 1208, 1232
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	6 cut(s)	26, 312, 524, 666, 783, 983
HphI	GGTGA	6 cut(s)	92, 302, 308, 532, 1093, 1180
Hpy166II	GTNNAC	5 cut(s)	38, 507, 1063, 1101, 1216
Hpy188I	TCNGA	3 cut(s)	186, 220, 1045
Hpy188III	TCNNGA	7 cut(s)	207, 274, 345, 395, 458, 691, 857
Hpy8I	GTNNAC	5 cut(s)	38, 507, 1063, 1101, 1216
Hpy99I	CGWCG	2 cut(s)	511, 956
HpyAV	CCTTC	3 cut(s)	88, 898, 902
HpyCH4III	ACNGT	3 cut(s)	535, 1001, 1140
HpyCH4IV	ACGT	2 cut(s)	778, 1092
HpyCH4V	TGCA	6 cut(s)	339, 600, 627, 768, 1026, 1225
HpyF10VI	GCNNNNNNNGC	7 cut(s)	633, 642, 651, 710, 888, 1094, 1231
HpyF3I	CTNAG	7 cut(s)	177, 185, 343, 366, 692, 930, 1199
HpySE526I	ACGT	2 cut(s)	778, 1092
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	6 cut(s)	199, 478, 649, 970, 1033, 1229
HspAI	GCGC	1 cut(s)	971
LmnI	GCTCC	1 cut(s)	663
Lsp1109I	GCAGC	2 cut(s)	351, 891
LweI	GCATC	3 cut(s)	891, 1046, 1098
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	2 cut(s)	778, 1092
MaeIII	GTNAC	4 cut(s)	314, 955, 1049, 1258
MboII	GAAGA	8 cut(s)	10, 73, 291, 305, 401, 593, 716, 1032
MflI	RGATCY	3 cut(s)	153, 391, 793
MhlI	GDGCHC	1 cut(s)	540
MluCI	AATT	8 cut(s)	45, 279, 321, 432, 837, 909, 1250, 1293
MlyI	GAGTC	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	771
MseI	TTAA	2 cut(s)	48, 158
MslI	CAYNNNNRTG	2 cut(s)	827, 1106
MspI	CCGG	6 cut(s)	26, 312, 524, 666, 783, 983
MspR9I	CCNGG	3 cut(s)	26, 614, 784
MvaI	CCWGG	1 cut(s)	614
MwoI	GCNNNNNNNGC	7 cut(s)	633, 642, 651, 710, 888, 1094, 1231
NciI	CCSGG	2 cut(s)	26, 784
NcoI	CCATGG	1 cut(s)	966
NlaIII	CATG	6 cut(s)	199, 478, 649, 970, 1033, 1229
NlaIV	GGNNCC	3 cut(s)	703, 795, 964
NmeAIII	GCCGAG	1 cut(s)	599
NmuCI	GTSAC	3 cut(s)	314, 955, 1258
NspI	RCATGY	2 cut(s)	649, 1229
PaeR7I	CTCGAG	1 cut(s)	68
PinAI	ACCGGT	1 cut(s)	311
PkrI	GCNGC	4 cut(s)	341, 518, 821, 881
Ple19I	CGATCG	1 cut(s)	400
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
Ppu21I	YACGTR	1 cut(s)	779
PshBI	ATTAAT	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	612
PspEI	GGTNACC	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	612
PspN4I	GGNNCC	3 cut(s)	703, 795, 964
PspPI	GGNCC	2 cut(s)	702, 963
PspXI	VCTCGAGB	1 cut(s)	68
PstNI	CAGNNNCTG	3 cut(s)	765, 812, 885
PsuI	RGATCY	3 cut(s)	153, 391, 793
PvuI	CGATCG	1 cut(s)	400
RsaI	GTAC	6 cut(s)	74, 194, 781, 941, 977, 1034
RsaNI	GTAC	6 cut(s)	73, 193, 780, 940, 976, 1033
RseI	CAYNNNNRTG	2 cut(s)	827, 1106
SalI	GTCGAC	1 cut(s)	505
SaqAI	TTAA	2 cut(s)	48, 158
SatI	GCNGC	4 cut(s)	340, 517, 820, 880
Sau96I	GGNCC	2 cut(s)	702, 963
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	3 cut(s)	26, 614, 784
SduI	GDGCHC	1 cut(s)	540
SfaNI	GCATC	3 cut(s)	891, 1046, 1098
SfcI	CTRYAG	1 cut(s)	886
Sfr274I	CTCGAG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	963
SlaI	CTCGAG	1 cut(s)	68
SmiMI	CAYNNNNRTG	2 cut(s)	827, 1106
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SnaBI	TACGTA	1 cut(s)	779
Sse9I	AATT	8 cut(s)	45, 279, 321, 432, 837, 909, 1250, 1293
SsiI	CCGC	3 cut(s)	516, 679, 820
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	3 cut(s)	24, 612, 782
StyI	CCWWGG	2 cut(s)	117, 966
TaaI	ACNGT	3 cut(s)	535, 1001, 1140
TaiI	ACGT	2 cut(s)	781, 1095
TaqI	TCGA	6 cut(s)	69, 206, 396, 506, 727, 744
TasI	AATT	8 cut(s)	45, 279, 321, 432, 837, 909, 1250, 1293
TatI	WGTACW	4 cut(s)	72, 192, 939, 975
TauI	GCSGC	2 cut(s)	519, 822
Tru1I	TTAA	2 cut(s)	48, 158
Tru9I	TTAA	2 cut(s)	48, 158
TscAI	CASTG	3 cut(s)	45, 236, 1006
TseFI	GTSAC	3 cut(s)	314, 955, 1258
TseI	GCWGC	2 cut(s)	339, 879
Tsp45I	GTSAC	3 cut(s)	314, 955, 1258
TspDTI	ATGAA	2 cut(s)	884, 1263
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	3 cut(s)	45, 236, 1006
VpaK11BI	GGWCC	1 cut(s)	963
VspI	ATTAAT	1 cut(s)	48
XapI	RAATTY	1 cut(s)	837
XceI	RCATGY	2 cut(s)	649, 1229
XhoI	CTCGAG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.