Rh6CG362700

Indole-3-acetic acid-amido synthetase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
55136974 .. 55140057
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG362700.1

Sequence Viewer

Length: 1398 bp
ATGTTCCTCTACTTCGTCAAGGCAGAGATGTCGACGCCGTGCGGCTTACCGGCACGGACGGTGCTCACCAGCTACTACAAGAGCAACCACTTCAAGTGCCGAGGCGAAGACCCTTTCAACAACTGCACCAGCCCTGACCAGGCCATTTTATGCAACGACAGCAACCAAAGCATGTATTGCCAGCTCCTCTCCGGCCTACTCCACCGCCACCAAGTCCTGAGGCTCGGGGCCGTTTTCGCCTCTGCTTTTCTTCGAGCCATTTCGTTCCTCGAACGAAACTGGGTCAGTTTCTGCAATGACATACGTACCGGGAAGTTGGATCCCCTAATCACAGACCCTGATTGCCGCACATCAATGGCTAAAATTCTCTCCTCCCCTGATCCTGATCTGGCTGACGAGATCAGCAGCATCTGTAGCCTTCATTCGTGGAAGGGAATTGTGTGCCAGCTCTGGCCTAAGGCCAAGTACATTGAGGCCGTCGTCACGGGGTCCATGGCGCAGTACATACCGGCTTTGGAGTATTACAGTGATGGGAAGCTTCCATTAGTCTGCACCATGTACGCATCTTCAGAGTGTTACTTCGGTGTGAACTTGAAACCCTTGTGTGATCCTGCTGACGTAGCGTTCACCCTGATGCCCAATATGGGGTATTTTGAGTTTATACCGTTGGGAGGAGGAGAGAATGGGACAAGGGTGATGGACATTGATGAGGATGAGGATGTCATTAGTGATAAGCTTGTGGACTTGGTGCATGTGAAGCTTGGCTTTTACTATGAATTGGTGGTCACAACCTTTGCTGGATTATGTCGTTATCGTATTGGTGATGTGCTACAAGTGACTGGATTTCACAATCAAGCCCCTCAATTCAGGTTCATATGTAGGAGGAATGTTGTTCTAAGCATCGACACTGACAAAACTAATGAAGAGGACTTGCACAAGAGCATTACCGTGGCCAAAAAATTGCTAGAGCCTTTCAATGCTCTTCTTGTGGAATACACGAGCTACGCTGATACGTCGTGCGTGCCTGGCCACTATGTATTGTATTGGGAGATTGCACACCACCATGGATCGCTGTCACCAACGGTGGACTTGATCAACAGTGTGGCCACGCCACTTGATGATAAGGTGCTCCAAGAATGTTGCATTGCAGTTGAGGAGGAGCTTGATTACATATACCGTCGATGCCGCTCACACGACAAGTCGGTGGGGCCGCTCGAGATACGTGTGGTGGAGCCTGGCACGTTTGAGGCTTTGATGGACTACTTCATTAGCCAAGGGGGTTCCATCAATCAGTATAAGACGCCGAGGGGTATCAAGTCTAAGAAGGCATTGAAGCTGCTTGATTCCAATGTCAAGGCCTGTTTCTTTAGTCCAAGAGATCCTCACTGGATTCCTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

465

Amino Acids

52.36

Weight (kDa)

5.57

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GH3 PF03321 2 - 178 5.1e-63 GH3 family N-terminal domain
GH3_M PF23571 209 - 294 1.5e-28 GH3 family central domain
GH3_C PF23572 309 - 441 8.9e-35 GH3 family C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 1188, 1213
AccI GTMKAC 1 cut(s) 32
AciI CCGC 5 cut(s) 42, 205, 346, 1186, 1211
AclWI GGATC 6 cut(s) 314, 327, 374, 602, 1075, 1373
AcoI YGGCCR 3 cut(s) 951, 1027, 1104
AcsI RAATTY 1 cut(s) 363
AcuI CTGAAG 1 cut(s) 552
AcyI GRCGYC 2 cut(s) 35, 1301
AfaI GTAC 4 cut(s) 307, 467, 503, 560
AfiI CCNNNNNNNGG 4 cut(s) 139, 644, 645, 671
AflIII ACRYGT 1 cut(s) 1222
AgsI TTSAA 5 cut(s) 94, 118, 595, 976, 1333
AjnI CCWGG 3 cut(s) 138, 1024, 1234
AluBI AGCT 9 cut(s) 72, 184, 448, 538, 736, 760, 1002, 1162, 1336
AluI AGCT 9 cut(s) 72, 184, 448, 538, 736, 760, 1002, 1162, 1336
Alw21I GWGCWC 2 cut(s) 66, 1131
AlwI GGATC 6 cut(s) 314, 327, 374, 602, 1075, 1373
AlwNI CAGNNNCTG 3 cut(s) 291, 338, 411
Ama87I CYCGRG 2 cut(s) 224, 1214
ApeKI GCWGC 2 cut(s) 405, 1336
ApoI RAATTY 1 cut(s) 363
AspLEI GCGC 1 cut(s) 499
AspS9I GGNCC 3 cut(s) 228, 489, 1208
AsuC2I CCSGG 1 cut(s) 310
AsuHPI GGTGA 5 cut(s) 58, 619, 706, 833, 1068
AvaI CYCGRG 2 cut(s) 224, 1214
AvaII GGWCC 1 cut(s) 489
AxyI CCTNAGG 2 cut(s) 218, 456
BaeI ACNNNNGTAYC 2 cut(s) 289, 322
BalI TGGCCA 3 cut(s) 953, 1029, 1106
BamHI GGATCC 1 cut(s) 319
BauI CACGAG 1 cut(s) 997
BbsI GAAGAC 1 cut(s) 114
Bbv12I GWGCWC 2 cut(s) 66, 1131
BbvI GCAGC 2 cut(s) 417, 1323
BccI CCATC 4 cut(s) 524, 691, 1249, 1292
BceAI ACGGC 3 cut(s) 22, 215, 461
BcgI CGANNNNNNTGC 2 cut(s) 12, 46
BciT130I CCWGG 3 cut(s) 140, 1026, 1236
BclI TGATCA 1 cut(s) 1092
BcnI CCSGG 1 cut(s) 310
BfaI CTAG 1 cut(s) 965
BfmI CTRYAG 1 cut(s) 412
BisI GCNGC 6 cut(s) 43, 346, 406, 1186, 1211, 1337
BlsI GCNGC 6 cut(s) 44, 347, 407, 1187, 1212, 1338
Bme1390I CCNGG 4 cut(s) 140, 310, 1026, 1236
Bme18I GGWCC 1 cut(s) 489
BmeT110I CYCGRG 2 cut(s) 224, 1214
BmgT120I GGNCC 3 cut(s) 228, 489, 1208
BmiI GGNNCC 6 cut(s) 229, 321, 490, 1209, 1233, 1282
BmrFI CCNGG 4 cut(s) 140, 310, 1026, 1236
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 5 cut(s) 417, 572, 624, 909, 1172
BmuI ACTGGG 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 310
BsaAI YACGTR 2 cut(s) 305, 1223
BsaBI GATNNNNATC 1 cut(s) 384
BsaHI GRCGYC 2 cut(s) 35, 1301
BsaJI CCNNGG 6 cut(s) 100, 492, 948, 1063, 1273, 1304
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 644, 645, 671
Bse118I RCCGGY 2 cut(s) 49, 508
Bse1I ACTGG 3 cut(s) 284, 844, 1391
Bse21I CCTNAGG 2 cut(s) 218, 456
Bse3DI GCAATG 2 cut(s) 301, 1143
Bse8I GATNNNNATC 1 cut(s) 384
BseBI CCWGG 3 cut(s) 140, 1026, 1236
BseDI CCNNGG 6 cut(s) 100, 492, 948, 1063, 1273, 1304
BseGI GGATG 2 cut(s) 718, 724
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 4 cut(s) 139, 644, 645, 671
BseMI GCAATG 2 cut(s) 301, 1143
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 3 cut(s) 284, 844, 1391
BseRI GAGGAG 6 cut(s) 176, 361, 687, 690, 1169, 1172
BseXI GCAGC 2 cut(s) 417, 1323
BsgI GTGCAG 2 cut(s) 109, 535
BsiHKAI GWGCWC 2 cut(s) 66, 1131
BsiHKCI CYCGRG 2 cut(s) 224, 1214
BsiSI CCGG 4 cut(s) 50, 192, 309, 509
BslFI GGGAC 1 cut(s) 700
BslI CCNNNNNNNGG 4 cut(s) 139, 644, 645, 671
BsmFI GGGAC 1 cut(s) 700
BsoBI CYCGRG 2 cut(s) 224, 1214
Bsp1286I GDGCHC 2 cut(s) 66, 1131
Bsp143I GATC 8 cut(s) 319, 379, 385, 399, 607, 1067, 1092, 1378
Bsp19I CCATGG 2 cut(s) 492, 1063
BspACI CCGC 5 cut(s) 42, 205, 346, 1186, 1211
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 6 cut(s) 229, 321, 490, 1209, 1233, 1282
BspPI GGATC 6 cut(s) 314, 327, 374, 602, 1075, 1373
BspQI GCTCTTC 1 cut(s) 987
BsrBI CCGCTC 2 cut(s) 1188, 1213
BsrDI GCAATG 2 cut(s) 301, 1143
BsrFI RCCGGY 2 cut(s) 49, 508
BsrI ACTGG 3 cut(s) 284, 844, 1391
BssAI RCCGGY 2 cut(s) 49, 508
BssECI CCNNGG 6 cut(s) 100, 492, 948, 1063, 1273, 1304
BssMI GATC 8 cut(s) 319, 379, 385, 399, 607, 1067, 1092, 1378
BssNI GRCGYC 2 cut(s) 35, 1301
BssSI CACGAG 1 cut(s) 997
BssT1I CCWWGG 3 cut(s) 492, 1063, 1273
Bst2BI CACGAG 1 cut(s) 997
Bst2UI CCWGG 3 cut(s) 140, 1026, 1236
Bst4CI ACNGT 7 cut(s) 61, 527, 666, 949, 1084, 1100, 1178
Bst6I CTCTTC 2 cut(s) 918, 987
BstACI GRCGYC 2 cut(s) 35, 1301
BstAPI GCANNNNNTGC 1 cut(s) 177
BstBAI YACGTR 2 cut(s) 305, 1223
BstC8I GCNNGC 3 cut(s) 182, 446, 1022
BstDEI CTNAG 5 cut(s) 218, 456, 896, 1320, 1395
BstDSI CCRYGG 3 cut(s) 492, 948, 1063
BstF5I GGATG 2 cut(s) 718, 724
BstHHI GCGC 1 cut(s) 499
BstKTI GATC 8 cut(s) 322, 382, 388, 402, 610, 1070, 1095, 1381
BstMBI GATC 8 cut(s) 319, 379, 385, 399, 607, 1067, 1092, 1378
BstMWI GCNNNNNNNGC 8 cut(s) 159, 168, 177, 236, 414, 620, 757, 1026
BstNI CCWGG 3 cut(s) 140, 1026, 1236
BstNSI RCATGY 2 cut(s) 175, 755
BstSCI CCNGG 4 cut(s) 138, 308, 1024, 1234
BstSFI CTRYAG 1 cut(s) 412
BstSNI TACGTA 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 417, 1323
BstV2I GAAGAC 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 319, 1378
BstYI RGATCY 2 cut(s) 319, 1378
Bsu36I CCTNAGG 2 cut(s) 218, 456
BtgI CCRYGG 3 cut(s) 492, 948, 1063
BtsCI GGATG 2 cut(s) 718, 724
BtsIMutI CAGTG 4 cut(s) 532, 906, 1105, 1384
Cac8I GCNNGC 3 cut(s) 182, 446, 1022
CaiI CAGNNNCTG 3 cut(s) 291, 338, 411
CfoI GCGC 1 cut(s) 499
Cfr10I RCCGGY 2 cut(s) 49, 508
Cfr13I GGNCC 3 cut(s) 228, 489, 1208
CseI GACGC 2 cut(s) 43, 1309
Csp6I GTAC 4 cut(s) 306, 466, 502, 559
CspCI CAANNNNNGTGG 2 cut(s) 1096, 1131
CviAII CATG 5 cut(s) 172, 493, 556, 752, 1064
CviQI GTAC 4 cut(s) 306, 466, 502, 559
DdeI CTNAG 5 cut(s) 218, 456, 896, 1320, 1395
DpnI GATC 8 cut(s) 321, 381, 387, 401, 609, 1069, 1094, 1380
DpnII GATC 8 cut(s) 319, 379, 385, 399, 607, 1067, 1092, 1378
EaeI YGGCCR 3 cut(s) 951, 1027, 1104
Eam1104I CTCTTC 2 cut(s) 918, 987
EarI CTCTTC 2 cut(s) 918, 987
Eco105I TACGTA 1 cut(s) 305
Eco130I CCWWGG 3 cut(s) 492, 1063, 1273
Eco147I AGGCCT 1 cut(s) 1358
Eco47I GGWCC 1 cut(s) 489
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 2 cut(s) 218, 456
Eco88I CYCGRG 2 cut(s) 224, 1214
EcoRII CCWGG 3 cut(s) 138, 1024, 1234
EcoT14I CCWWGG 3 cut(s) 492, 1063, 1273
ErhI CCWWGG 3 cut(s) 492, 1063, 1273
FaeI CATG 5 cut(s) 175, 496, 559, 755, 1067
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 1 cut(s) 700
FatI CATG 5 cut(s) 171, 492, 555, 751, 1063
FauNDI CATATG 1 cut(s) 875
FbaI TGATCA 1 cut(s) 1092
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 43, 346, 406, 1186, 1211, 1337
FokI GGATG 2 cut(s) 725, 731
Fsp4HI GCNGC 6 cut(s) 43, 346, 406, 1186, 1211, 1337
FspBI CTAG 1 cut(s) 965
GlaI GCGC 1 cut(s) 498
GluI GCNGC 6 cut(s) 43, 346, 406, 1186, 1211, 1337
HapII CCGG 4 cut(s) 50, 192, 309, 509
HgaI GACGC 2 cut(s) 43, 1309
HhaI GCGC 1 cut(s) 499
Hin1I GRCGYC 2 cut(s) 35, 1301
Hin1II CATG 5 cut(s) 175, 496, 559, 755, 1067
Hin6I GCGC 1 cut(s) 497
HinP1I GCGC 1 cut(s) 497
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HindIII AAGCTT 3 cut(s) 536, 734, 758
HinfI GANTC 2 cut(s) 1343, 1390
HpaII CCGG 4 cut(s) 50, 192, 309, 509
HphI GGTGA 5 cut(s) 58, 619, 706, 833, 1068
Hpy166II GTNNAC 5 cut(s) 33, 589, 627, 742, 1087
Hpy188I TCNGA 1 cut(s) 571
Hpy188III TCNNGA 3 cut(s) 217, 383, 1216
Hpy8I GTNNAC 5 cut(s) 33, 589, 627, 742, 1087
Hpy99I CGWCG 4 cut(s) 37, 482, 1018, 1182
HpyAV CCTTC 3 cut(s) 424, 428, 1318
HpyCH4III ACNGT 7 cut(s) 61, 527, 666, 949, 1084, 1100, 1178
HpyCH4IV ACGT 5 cut(s) 304, 618, 1013, 1222, 1241
HpyCH4V TGCA 9 cut(s) 126, 153, 294, 552, 751, 934, 1055, 1143, 1148
HpyF10VI GCNNNNNNNGC 8 cut(s) 159, 168, 177, 236, 414, 620, 757, 1026
HpyF3I CTNAG 5 cut(s) 218, 456, 896, 1320, 1395
HpySE526I ACGT 5 cut(s) 304, 618, 1013, 1222, 1241
Hsp92I GRCGYC 2 cut(s) 35, 1301
Hsp92II CATG 5 cut(s) 175, 496, 559, 755, 1067
HspAI GCGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 1092
Kzo9I GATC 8 cut(s) 319, 379, 385, 399, 607, 1067, 1092, 1378
LguI GCTCTTC 1 cut(s) 987
LmnI GCTCC 4 cut(s) 189, 1134, 1159, 1231
Lsp1109I GCAGC 2 cut(s) 417, 1323
LweI GCATC 5 cut(s) 417, 572, 624, 909, 1172
MaeI CTAG 1 cut(s) 965
MaeII ACGT 5 cut(s) 304, 618, 1013, 1222, 1241
MaeIII GTNAC 5 cut(s) 481, 575, 784, 835, 1074
MalI GATC 8 cut(s) 321, 381, 387, 401, 609, 1069, 1094, 1380
MbiI CCGCTC 2 cut(s) 1188, 1213
MboI GATC 8 cut(s) 319, 379, 385, 399, 607, 1067, 1092, 1378
MboII GAAGA 5 cut(s) 119, 242, 558, 935, 974
MflI RGATCY 2 cut(s) 319, 1378
MhlI GDGCHC 2 cut(s) 66, 1131
MlsI TGGCCA 3 cut(s) 953, 1029, 1106
MluCI AATT 5 cut(s) 363, 435, 776, 863, 959
MluNI TGGCCA 3 cut(s) 953, 1029, 1106
MmeI TCCRAC 1 cut(s) 297
Mox20I TGGCCA 3 cut(s) 953, 1029, 1106
MscI TGGCCA 3 cut(s) 953, 1029, 1106
MslI CAYNNNNRTG 4 cut(s) 353, 632, 947, 1062
Msp20I TGGCCA 3 cut(s) 953, 1029, 1106
MspI CCGG 4 cut(s) 50, 192, 309, 509
MspR9I CCNGG 4 cut(s) 140, 310, 1026, 1236
MvaI CCWGG 3 cut(s) 140, 1026, 1236
MwoI GCNNNNNNNGC 8 cut(s) 159, 168, 177, 236, 414, 620, 757, 1026
NciI CCSGG 1 cut(s) 310
NcoI CCATGG 2 cut(s) 492, 1063
NdeI CATATG 1 cut(s) 875
NdeII GATC 8 cut(s) 319, 379, 385, 399, 607, 1067, 1092, 1378
NlaIII CATG 5 cut(s) 175, 496, 559, 755, 1067
NlaIV GGNNCC 6 cut(s) 229, 321, 490, 1209, 1233, 1282
NmeAIII GCCGAG 2 cut(s) 125, 1329
NmuCI GTSAC 4 cut(s) 481, 784, 835, 1074
NspI RCATGY 2 cut(s) 175, 755
PaeR7I CTCGAG 1 cut(s) 1214
PceI AGGCCT 1 cut(s) 1358
PciSI GCTCTTC 1 cut(s) 987
PfeI GAWTC 2 cut(s) 1343, 1390
PkrI GCNGC 6 cut(s) 44, 347, 407, 1187, 1212, 1338
Ppu21I YACGTR 2 cut(s) 305, 1223
Psp6I CCWGG 3 cut(s) 138, 1024, 1234
PspGI CCWGG 3 cut(s) 138, 1024, 1234
PspN4I GGNNCC 6 cut(s) 229, 321, 490, 1209, 1233, 1282
PspPI GGNCC 3 cut(s) 228, 489, 1208
PstNI CAGNNNCTG 3 cut(s) 291, 338, 411
PsuI RGATCY 2 cut(s) 319, 1378
RsaI GTAC 4 cut(s) 307, 467, 503, 560
RsaNI GTAC 4 cut(s) 306, 466, 502, 559
RseI CAYNNNNRTG 4 cut(s) 353, 632, 947, 1062
SalI GTCGAC 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 987
SatI GCNGC 6 cut(s) 43, 346, 406, 1186, 1211, 1337
Sau3AI GATC 8 cut(s) 319, 379, 385, 399, 607, 1067, 1092, 1378
Sau96I GGNCC 3 cut(s) 228, 489, 1208
ScrFI CCNGG 4 cut(s) 140, 310, 1026, 1236
SduI GDGCHC 2 cut(s) 66, 1131
SfaNI GCATC 5 cut(s) 417, 572, 624, 909, 1172
SfcI CTRYAG 1 cut(s) 412
Sfr274I CTCGAG 1 cut(s) 1214
SinI GGWCC 1 cut(s) 489
SlaI CTCGAG 1 cut(s) 1214
SmiMI CAYNNNNRTG 4 cut(s) 353, 632, 947, 1062
SmlI CTYRAG 1 cut(s) 1214
SmoI CTYRAG 1 cut(s) 1214
SnaBI TACGTA 1 cut(s) 305
Sse9I AATT 5 cut(s) 363, 435, 776, 863, 959
SseBI AGGCCT 1 cut(s) 1358
SsiI CCGC 5 cut(s) 42, 205, 346, 1186, 1211
SspMI CTAG 1 cut(s) 965
StuI AGGCCT 1 cut(s) 1358
StyD4I CCNGG 4 cut(s) 138, 308, 1024, 1234
StyI CCWWGG 3 cut(s) 492, 1063, 1273
TaaI ACNGT 7 cut(s) 61, 527, 666, 949, 1084, 1100, 1178
TaiI ACGT 5 cut(s) 307, 621, 1016, 1225, 1244
TaqI TCGA 6 cut(s) 32, 253, 270, 903, 1180, 1215
TasI AATT 5 cut(s) 363, 435, 776, 863, 959
TatI WGTACW 2 cut(s) 465, 501
TauI GCSGC 4 cut(s) 45, 348, 1188, 1213
TfiI GAWTC 2 cut(s) 1343, 1390
TscAI CASTG 4 cut(s) 532, 913, 1105, 1391
TseFI GTSAC 4 cut(s) 481, 784, 835, 1074
TseI GCWGC 2 cut(s) 405, 1336
Tsp45I GTSAC 4 cut(s) 481, 784, 835, 1074
TspDTI ATGAA 5 cut(s) 410, 789, 862, 936, 1255
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 4 cut(s) 532, 913, 1105, 1391
VpaK11BI GGWCC 1 cut(s) 489
XapI RAATTY 1 cut(s) 363
XceI RCATGY 2 cut(s) 175, 755
XhoI CTCGAG 1 cut(s) 1214
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 1 cut(s) 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.