Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006576

Physical Location & Seq

Genomic Coordinates Forward (+)

38556768 .. 38557040

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0242000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGACGGGGAGTGAGCCGCAGCTGCAGCAATTGATAATAGAGGCTCGAGCTGTTGCTTTTATGGAGGCGCAGCTGGGGGAGACATTCAGGGAGGATGGGCCAATACTGGGCTTGGAGTTTGATCCGTTGCCACCGGGTGCATTTGGTTCCGTCGTCATCAACGCCACGCTGTGCTCGTCGGCGCTGCCGCACATCATCGGCTCCGACACGTCCAAGGACCTGTGGCTAACGCTGGAGCGGCGGTTCACGTCGATGTCGAATTGGAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

PARP PARP_reg SAP WGR

Protein Analysis

90

Amino Acids

9.84

Weight (kDa)

4.57

Isoelectric Point (pI)

55.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02390 AT4G02390 AT4G02390
fragaria_vesca	FvH4_2g25840 FvH4_2g25840 FvH4_2g25840
malus_domestica	MD03G1289400.v1.1 MD03G1289500.v1.1 MD03G1289600.v1.1
prunus_persica	Prupe.8G262600_v2.0.a1 Prupe.8G262600_v2.0.a1 Prupe.8G262600_v2.0.a1 Prupe.8G262600_v2.0.a1 Prupe.8G262600_v2.0.a1
pyrus_communis	pycom03g22920
rosa_chinensis	RchiOBHm_Chr6g0294171
rosa_laevigata	RLG00000011893
rosa_multiflora	Rmu_sc0001521.1_g000044
rosa_roxburghii	Rroxscaffold_7G00173580
rosa_rugosa	Rorug06G0242000 Rorug06G0242100
rosa_samantha	Rh6AG354300 Rh6BG361200 Rh6CG368500 Rh6DG355300
rosa_wichuraiana	Rw6G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	238
AciI	CCGC	4 cut(s)	17, 188, 238, 241
AclWI	GGATC	1 cut(s)	116
AdeI	CACNNNGTG	2 cut(s)	137, 171
AfiI	CCNNNNNNNGG	1 cut(s)	107
AflIII	ACRYGT	1 cut(s)	207
AjiI	CACGTC	2 cut(s)	210, 249
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	22, 50, 73
AluI	AGCT	3 cut(s)	22, 50, 73
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	116
Ama87I	CYCGRG	1 cut(s)	45
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	5 cut(s)	19, 22, 25, 70, 184
AspLEI	GCGC	2 cut(s)	70, 184
AspS9I	GGNCC	2 cut(s)	98, 217
AsuC2I	CCSGG	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	5 cut(s)	9, 31, 37, 82, 171
BccI	CCATC	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	23
BfoI	RGCGCY	1 cut(s)	185
BisI	GCNGC	8 cut(s)	17, 20, 23, 26, 71, 185, 188, 239
BlsI	GCNGC	8 cut(s)	18, 21, 24, 27, 72, 186, 189, 240
Bme1390I	CCNGG	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	45
BmgBI	CACGTC	2 cut(s)	210, 249
BmgT120I	GGNCC	2 cut(s)	98, 217
BmiI	GGNNCC	2 cut(s)	148, 202
BmrFI	CCNGG	1 cut(s)	135
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	5 cut(s)	9, 31, 37, 82, 171
BseYI	CCCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	4 cut(s)	17, 188, 238, 241
BspANI	GGCC	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	148, 202
BspMAI	CTGCAG	1 cut(s)	27
BspPI	GGATC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	1 cut(s)	121
BssT1I	CCWWGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	70, 184
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 25, 238
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	23
BstV1I	GCAGC	5 cut(s)	9, 31, 37, 82, 171
BsuRI	GGCC	1 cut(s)	100
BtrI	CACGTC	2 cut(s)	210, 249
BtsCI	GGATG	1 cut(s)	100
CfoI	GCGC	2 cut(s)	70, 184
Cfr13I	GGNCC	2 cut(s)	98, 217
CviJI	RGCY	9 cut(s)	16, 22, 44, 50, 73, 100, 111, 201, 226
CviKI_1	RGCY	9 cut(s)	16, 22, 44, 50, 73, 100, 111, 201, 226
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
DraIII	CACNNNGTG	2 cut(s)	137, 171
Eco130I	CCWWGG	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaiI	YATR	1 cut(s)	62
Fnu4HI	GCNGC	8 cut(s)	17, 20, 23, 26, 71, 185, 188, 239
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	8 cut(s)	17, 20, 23, 26, 71, 185, 188, 239
GlaI	GCGC	2 cut(s)	69, 183
GluI	GCNGC	8 cut(s)	17, 20, 23, 26, 71, 185, 188, 239
GsaI	CCCAGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	185
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	2 cut(s)	70, 184
Hin6I	GCGC	2 cut(s)	68, 182
HinP1I	GCGC	2 cut(s)	68, 182
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	246
Hpy99I	CGWCG	3 cut(s)	155, 181, 253
HpyCH4IV	ACGT	2 cut(s)	209, 248
HpyCH4V	TGCA	2 cut(s)	25, 140
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 25, 238
HpySE526I	ACGT	2 cut(s)	209, 248
HspAI	GCGC	2 cut(s)	68, 182
Kzo9I	GATC	1 cut(s)	121
LmnI	GCTCC	2 cut(s)	206, 235
LpnPI	CCDG	6 cut(s)	59, 73, 92, 147, 218, 233
Lsp1109I	GCAGC	5 cut(s)	9, 31, 37, 82, 171
MaeII	ACGT	2 cut(s)	209, 248
MalI	GATC	1 cut(s)	123
MbiI	CCGCTC	1 cut(s)	238
MboI	GATC	1 cut(s)	121
MfeI	CAATTG	1 cut(s)	29
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	2 cut(s)	29, 259
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	4 cut(s)	34, 58, 85, 260
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	22, 73
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	22, 25, 238
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	1 cut(s)	121
NlaIV	GGNNCC	2 cut(s)	148, 202
PaeR7I	CTCGAG	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	2 cut(s)	173, 254
PkrI	GCNGC	8 cut(s)	18, 21, 24, 27, 72, 186, 189, 240
PpuMI	RGGWCCY	1 cut(s)	217
Psp5II	RGGWCCY	1 cut(s)	217
PspFI	CCCAGC	1 cut(s)	73
PspN4I	GGNNCC	2 cut(s)	148, 202
PspPI	GGNCC	2 cut(s)	98, 217
PspPPI	RGGWCCY	1 cut(s)	217
PspXI	VCTCGAGB	1 cut(s)	45
PstI	CTGCAG	1 cut(s)	27
PvuII	CAGCTG	2 cut(s)	22, 73
RseI	CAYNNNNRTG	1 cut(s)	251
SatI	GCNGC	8 cut(s)	17, 20, 23, 26, 71, 185, 188, 239
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	2 cut(s)	98, 217
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	6 cut(s)	24, 52, 75, 212, 222, 251
SfcI	CTRYAG	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	29, 259
SsiI	CCGC	4 cut(s)	17, 188, 238, 241
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	213
TaiI	ACGT	2 cut(s)	212, 251
TaqI	TCGA	3 cut(s)	46, 251, 257
TasI	AATT	2 cut(s)	29, 259
TauI	GCSGC	3 cut(s)	19, 190, 241
TseI	GCWGC	5 cut(s)	19, 22, 25, 70, 184
TspGWI	ACGGA	2 cut(s)	114, 139
VpaK11BI	GGWCC	1 cut(s)	217
XhoI	CTCGAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.