Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006576

Physical Location & Seq

Genomic Coordinates Forward (+)

38567474 .. 38568310

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0242100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTTACCACACTCGCTCTAACAGCTTCCCCTCAAGGCCACACCCTCTTTTTCAAGAAGTTGATGAACATTTGTGCAGATTGAGGTCTTCCGAAGCCACTTCCACATCTTCATCCTCAATAAGAAAAAAACTAAATGGCCTGCAAGACATGCTTGATTGTGTTGATATGTTGCTTCAGTTGCAAGGCACCCAACAAGTATTAGCACAAGAGCAGCAACAAAAATGGGCTAATGAGCTATTAGACGGCTCTCTCTGGCTCTTGGATATTTGCAGCACCGCAAAGGATGCCATCTCGCAAACGAAGGAGTCCATACAAGACCTTCAATCAATCATTAGAAGAAAACGGGGAGGTGAAACTGGACTCACAAGTGAGGTCAGGAAATACTTGAGCTCTCGGAAGATGGTGAAGAAGTCAATCCACAAGGCTATGGGAAACCTGAAGGGAATGGAAAACAAATCTACTTTCTCATCCGCCAGCAAGGACCAAGAGACTATTGCCATTGTTAGCAAGCTAAGAGATGTTAAAGCAATTACTCTCAGAGTCTTTGAATCAGTGCTGTCCTTCATCTCTGGGCCAAAGTCAAAGCCTAGCAGCTGGTCTTTCGTTTCCAAAATTGTGCAGTCTAAGAGGATAGCTTGTGATGAAGAAGCGAATGTAAATGAATTTGCAGAGGTTGATGCTGCATTAATGAAGTCATTAAAGAGTGCAGAAAATGCACAGAACCAGCTTAACGATCTGGAATCATGCATTCAAGACCAAGAAGAAGGACTCGAGTGCTTGTTTAGGCAATTGATCAAAACCAGAGTCTCCCTTCTTAACATCCTGAGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006266 GO:0006271 GO:0006273 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016874 GO:0016886 GO:0022616 GO:0033554 GO:0034641 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051103 GO:0051716 GO:0071704 GO:0090304 GO:0140097 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03410 ko04210 ko04212 ko04214 ko04217 map03410 map04210 map04212 map04214 map04217

Pfam Domains

Protein Families

PARP PARP_reg SAP WGR

Protein Analysis

278

Amino Acids

31.21

Weight (kDa)

8.67

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BPS1	PF03087	44 - 275	2.1e-86	Protein BPS1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02390 AT4G02390 AT4G02390
fragaria_vesca	FvH4_2g25840 FvH4_2g25840 FvH4_2g25840
malus_domestica	MD03G1289400.v1.1 MD03G1289500.v1.1 MD03G1289600.v1.1
prunus_persica	Prupe.8G262600_v2.0.a1 Prupe.8G262600_v2.0.a1 Prupe.8G262600_v2.0.a1 Prupe.8G262600_v2.0.a1 Prupe.8G262600_v2.0.a1
pyrus_communis	pycom03g22920
rosa_chinensis	RchiOBHm_Chr6g0294171
rosa_laevigata	RLG00000011893
rosa_multiflora	Rmu_sc0001521.1_g000044
rosa_roxburghii	Rroxscaffold_7G00173580
rosa_rugosa	Rorug06G0242000 Rorug06G0242100
rosa_samantha	Rh6AG354300 Rh6BG361200 Rh6CG368500 Rh6DG355300
rosa_wichuraiana	Rw6G030880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AciI	CCGC	2 cut(s)	279, 474
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	2 cut(s)	161, 461
AgsI	TTSAA	4 cut(s)	56, 326, 551, 755
AluBI	AGCT	7 cut(s)	27, 238, 393, 514, 597, 638, 730
AluI	AGCT	7 cut(s)	27, 238, 393, 514, 597, 638, 730
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	485, 814
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	3 cut(s)	38, 139, 575
ApeKI	GCWGC	4 cut(s)	214, 273, 594, 683
ApoI	RAATTY	1 cut(s)	665
ArsI	GACNNNNNNTTYG	2 cut(s)	792, 824
AseI	ATTAAT	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	484, 575
AsuHPI	GGTGA	2 cut(s)	365, 418
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	188
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	4 cut(s)	226, 285, 606, 670
BccI	CCATC	2 cut(s)	299, 397
BceAI	ACGGC	1 cut(s)	262
BclI	TGATCA	1 cut(s)	795
BcoDI	GTCTC	2 cut(s)	485, 814
BfaI	CTAG	2 cut(s)	591, 835
BisI	GCNGC	4 cut(s)	215, 274, 595, 684
BlsI	GCNGC	4 cut(s)	216, 275, 596, 685
Bme18I	GGWCC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	2 cut(s)	484, 575
BmiI	GGNNCC	1 cut(s)	190
BmsI	GCATC	2 cut(s)	277, 670
BpiI	GAAGAC	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	827
BpuEI	CTTGAG	2 cut(s)	19, 409
Bse1I	ACTGG	1 cut(s)	364
BseGI	GGATG	4 cut(s)	113, 292, 470, 822
BseMII	CTCAG	2 cut(s)	553, 818
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	4 cut(s)	226, 285, 606, 670
BsgI	GTGCAG	3 cut(s)	97, 641, 729
BshFI	GGCC	3 cut(s)	40, 141, 577
BshNI	GGYRCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	773
BsmAI	GTCTC	2 cut(s)	485, 814
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	3 cut(s)	40, 141, 577
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	736, 795
BspACI	CCGC	2 cut(s)	279, 474
BspANI	GGCC	3 cut(s)	40, 141, 577
BspCNI	CTCAG	2 cut(s)	552, 819
BspLI	GGNNCC	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	2 cut(s)	736, 795
BstAPI	GCANNNNNTGC	3 cut(s)	151, 287, 716
BstC8I	GCNNGC	3 cut(s)	143, 478, 512
BstDEI	CTNAG	4 cut(s)	515, 539, 627, 827
BstF5I	GGATG	4 cut(s)	113, 292, 470, 822
BstKTI	GATC	2 cut(s)	739, 798
BstMAI	GTCTC	2 cut(s)	485, 814
BstMBI	GATC	2 cut(s)	736, 795
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 151, 181, 287, 716
BstNSI	RCATGY	1 cut(s)	154
BstV1I	GCAGC	4 cut(s)	226, 285, 606, 670
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	40, 141, 577
BtsCI	GGATG	4 cut(s)	113, 292, 470, 822
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	3 cut(s)	143, 478, 512
Cfr13I	GGNCC	2 cut(s)	484, 575
CviAII	CATG	2 cut(s)	151, 747
DdeI	CTNAG	4 cut(s)	515, 539, 627, 827
DpnI	GATC	2 cut(s)	738, 797
DpnII	GATC	2 cut(s)	736, 795
EciI	GGCGGA	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	393
Eco57I	CTGAAG	2 cut(s)	161, 461
Eco88I	CYCGRG	1 cut(s)	773
EcoICRI	GAGCTC	1 cut(s)	393
EcoT22I	ATGCAT	1 cut(s)	752
EcoT38I	GRGCYC	1 cut(s)	395
FaeI	CATG	2 cut(s)	154, 750
FaiI	YATR	5 cut(s)	152, 170, 314, 431, 748
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	2 cut(s)	150, 746
FbaI	TGATCA	1 cut(s)	795
Fnu4HI	GCNGC	4 cut(s)	215, 274, 595, 684
FokI	GGATG	4 cut(s)	100, 299, 457, 809
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	215, 274, 595, 684
FspBI	CTAG	2 cut(s)	591, 835
GluI	GCNGC	4 cut(s)	215, 274, 595, 684
HaeIII	GGCC	3 cut(s)	40, 141, 577
Hin1II	CATG	2 cut(s)	154, 750
HinfI	GANTC	7 cut(s)	308, 363, 543, 551, 743, 771, 807
HphI	GGTGA	2 cut(s)	365, 418
Hpy188I	TCNGA	3 cut(s)	94, 399, 542
Hpy188III	TCNNGA	5 cut(s)	56, 379, 740, 755, 826
HpyAV	CCTTC	6 cut(s)	298, 332, 436, 574, 761, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 151, 181, 287, 716
HpyF3I	CTNAG	4 cut(s)	515, 539, 627, 827
Hsp92II	CATG	2 cut(s)	154, 750
Ksp22I	TGATCA	1 cut(s)	795
Kzo9I	GATC	2 cut(s)	736, 795
Lsp1109I	GCAGC	4 cut(s)	226, 285, 606, 670
LweI	GCATC	2 cut(s)	277, 670
MaeI	CTAG	2 cut(s)	591, 835
MalI	GATC	2 cut(s)	738, 797
MboI	GATC	2 cut(s)	736, 795
MboII	GAAGA	7 cut(s)	81, 102, 351, 412, 421, 659, 776
MfeI	CAATTG	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	4 cut(s)	531, 615, 665, 791
MlyI	GAGTC	5 cut(s)	317, 357, 552, 765, 816
MnlI	CCTC	8 cut(s)	43, 57, 78, 127, 344, 367, 624, 667
Mph1103I	ATGCAT	1 cut(s)	752
MseI	TTAA	5 cut(s)	525, 689, 701, 732, 819
MspA1I	CMGCKG	1 cut(s)	597
MunI	CAATTG	1 cut(s)	791
Mva1269I	GAATGC	1 cut(s)	750
MwoI	GCNNNNNNNGC	5 cut(s)	24, 151, 181, 287, 716
NdeII	GATC	2 cut(s)	736, 795
NlaIII	CATG	2 cut(s)	154, 750
NlaIV	GGNNCC	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	752
NspI	RCATGY	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	773
PctI	GAATGC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	551, 743
PkrI	GCNGC	4 cut(s)	216, 275, 596, 685
PleI	GAGTC	5 cut(s)	316, 357, 551, 765, 815
PpsI	GAGTC	5 cut(s)	316, 357, 551, 765, 815
PshBI	ATTAAT	1 cut(s)	689
Psp124BI	GAGCTC	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	2 cut(s)	484, 575
PspXI	VCTCGAGB	1 cut(s)	773
PvuII	CAGCTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	5 cut(s)	525, 689, 701, 732, 819
SatI	GCNGC	4 cut(s)	215, 274, 595, 684
Sau3AI	GATC	2 cut(s)	736, 795
Sau96I	GGNCC	2 cut(s)	484, 575
SchI	GAGTC	5 cut(s)	317, 357, 552, 765, 816
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	2 cut(s)	277, 670
Sfr274I	CTCGAG	1 cut(s)	773
SinI	GGWCC	1 cut(s)	484
SlaI	CTCGAG	1 cut(s)	773
SmlI	CTYRAG	3 cut(s)	34, 388, 773
SmoI	CTYRAG	3 cut(s)	34, 388, 773
Sse9I	AATT	4 cut(s)	531, 615, 665, 791
SsiI	CCGC	2 cut(s)	279, 474
SspMI	CTAG	2 cut(s)	591, 835
SstI	GAGCTC	1 cut(s)	395
TaqI	TCGA	1 cut(s)	774
TasI	AATT	4 cut(s)	531, 615, 665, 791
TfiI	GAWTC	2 cut(s)	551, 743
Tru1I	TTAA	5 cut(s)	525, 689, 701, 732, 819
Tru9I	TTAA	5 cut(s)	525, 689, 701, 732, 819
TscAI	CASTG	1 cut(s)	561
TseI	GCWGC	4 cut(s)	214, 273, 594, 683
TspDTI	ATGAA	6 cut(s)	81, 102, 556, 660, 678, 707
TspRI	CASTG	1 cut(s)	561
VpaK11BI	GGWCC	1 cut(s)	484
VspI	ATTAAT	1 cut(s)	689
XapI	RAATTY	1 cut(s)	665
XceI	RCATGY	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	773
XspI	CTAG	2 cut(s)	591, 835
Zsp2I	ATGCAT	1 cut(s)	752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.