Rorug06G0256900

Iaa-amino acid hydrolase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Forward (+)
40382895 .. 40383146
252 bp
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UTR
Exon/CDS
Intron
Rorug06G0256900.1

Sequence Viewer

Length: 252 bp
ATGGTGGAGATCCGAGGCAGGTTAGAAGTTCTCATGAATGAACCAATGTCTATGATGGTGTATAATGAGAAGAAAACTTTGATGACTACCTTGCAAGAACTTTTATCGCAAGAAAAGGCTTTTTGGAAACAAAGAGCAAAAGTAACATGGTTGCAGGATGGTGACAGAAACTCTGGTTTCTTTCATCGGAAGGCAGCTAACCGGAAGCGGAAAAATAATTTTTTGGGGCTGTTTGATCATGAAAGGCACTAG

Protein Analysis

83

Amino Acids

10.01

Weight (kDa)

10.08

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 9
AciI CCGC 1 cut(s) 208
AclWI GGATC 1 cut(s) 4
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 173
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 49, 152
BclI TGATCA 1 cut(s) 235
BfaI CTAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 9
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 202
Bsp143I GATC 2 cut(s) 9, 235
BspACI CCGC 1 cut(s) 208
BspHI TCATGA 2 cut(s) 33, 238
BspMI ACCTGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 2 cut(s) 9, 235
BstF5I GGATG 1 cut(s) 163
BstKTI GATC 2 cut(s) 12, 238
BstMBI GATC 2 cut(s) 9, 235
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BtsCI GGATG 1 cut(s) 163
BveI ACCTGC 1 cut(s) 9
CciI TCATGA 2 cut(s) 33, 238
CviAII CATG 3 cut(s) 34, 147, 239
CviJI RGCY 3 cut(s) 119, 197, 229
CviKI_1 RGCY 3 cut(s) 119, 197, 229
DpnI GATC 2 cut(s) 11, 237
DpnII GATC 2 cut(s) 9, 235
FaeI CATG 3 cut(s) 37, 150, 242
FaiI YATR 5 cut(s) 35, 53, 63, 148, 240
FatI CATG 3 cut(s) 33, 146, 238
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 250
GluI GCNGC 1 cut(s) 195
HapII CCGG 1 cut(s) 202
Hin1II CATG 3 cut(s) 37, 150, 242
HpaII CCGG 1 cut(s) 202
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 2 cut(s) 14, 189
Hpy188III TCNNGA 2 cut(s) 34, 239
HpyAV CCTTC 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 94, 154
Hsp92II CATG 3 cut(s) 37, 150, 242
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 9, 235
LpnPI CCDG 4 cut(s) 4, 140, 159, 215
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 1 cut(s) 250
MaeIII GTNAC 2 cut(s) 142, 161
MalI GATC 2 cut(s) 11, 237
MboI GATC 2 cut(s) 9, 235
MboII GAAGA 1 cut(s) 82
MflI RGATCY 1 cut(s) 9
MluCI AATT 1 cut(s) 217
MnlI CCTC 1 cut(s) 8
MspI CCGG 1 cut(s) 202
NdeII GATC 2 cut(s) 9, 235
NlaIII CATG 3 cut(s) 37, 150, 242
NmuCI GTSAC 1 cut(s) 161
PagI TCATGA 2 cut(s) 33, 238
PkrI GCNGC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 9
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 2 cut(s) 9, 235
SetI ASST 3 cut(s) 23, 92, 199
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 208
SspMI CTAG 1 cut(s) 250
TasI AATT 1 cut(s) 217
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 3 cut(s) 50, 54, 173
XspI CTAG 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.