Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010157

Physical Location & Seq

Genomic Coordinates Forward (+)

40385751 .. 40386107

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0257000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTTTTGGGAGCAGTTGGGAAGGTGGTGACTCGTATTCAATCTGCTGAACATGTTGAACTCATTGCTTGTAGAAAGGCAGTGGATTATGTGTTAGAACATGGGCTTTTTCCTGTGTTGTTGGAGACTGATTATTTGGTTTTGAAACAACAATTGTGTCAAGAGGAGTTGCAAAATTCTTCAAATCTTGGAAGGTTATATGAGGATCTCAGACTAGATTTAGATGCAGGGCATCAAGTTCAGATTGTTCATGCTAGAAGGGAGGCTAATAAAACTGCACATATGTTGGTAGGTTTGCTGCTGAGTCTGACCAAGTGTTCTTTTGGTCTAATACTCCATCCTTTATTCAAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0006082 GO:0008150 GO:0008152 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010112 GO:0010817 GO:0016787 GO:0016810 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0043436 GO:0043900 GO:0044237 GO:0044281 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0080134 GO:1901700 GO:1990206

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

118

Amino Acids

13.32

Weight (kDa)

6.58

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	4 - 97	5.1e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44350
fragaria_vesca	FvH4_2g27160 FvH4_2g27160
malus_domestica	MD08G1161700.v1.1 MD15G1346800.v1.1
prunus_persica	Prupe.1G494400_v2.0.a1 Prupe.1G494400_v2.0.a1
pyrus_communis	pycom08g13900 pycom15g31060
rosa_chinensis	RchiOBHm_Chr6g0296071
rosa_laevigata	RLG00000011736
rosa_multiflora	Rmu_sc0003139.1_g000031 Rmu_sc0004275.1_g000018
rosa_roxburghii	Rroxscaffold_7G00171850
rosa_rugosa	Rorug06G0256900 Rorug06G0257000
rosa_samantha	Rh6AG370300 Rh6BG377400 Rh6CG383300 Rh6DG370100
rosa_wichuraiana	Rw6G032270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	175
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	41, 59, 145, 183, 349
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	1 cut(s)	175
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AsuHPI	GGTGA	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	285
BccI	CCATC	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	215, 255
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
BmsI	GCATC	2 cut(s)	214, 241
Bse3DI	GCAATG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	337
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	2 cut(s)	223, 293
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	285
BsgI	GTGCAG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	205
BspCNI	CTCAG	2 cut(s)	222, 294
BspPI	GGATC	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	63
BssMI	GATC	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	209, 302
BstF5I	GGATG	1 cut(s)	337
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	205
BstNSI	RCATGY	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	285
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
CviAII	CATG	3 cut(s)	53, 101, 251
CviJI	RGCY	2 cut(s)	106, 266
CviKI_1	RGCY	2 cut(s)	106, 266
DdeI	CTNAG	2 cut(s)	209, 302
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
FaeI	CATG	3 cut(s)	56, 104, 254
FaiI	YATR	8 cut(s)	54, 90, 102, 199, 201, 252, 282, 284
FatI	CATG	3 cut(s)	52, 100, 250
FauNDI	CATATG	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	2 cut(s)	215, 255
GluI	GCNGC	1 cut(s)	299
Hin1II	CATG	3 cut(s)	56, 104, 254
HinfI	GANTC	2 cut(s)	31, 304
HphI	GGTGA	1 cut(s)	40
Hpy188I	TCNGA	3 cut(s)	212, 243, 309
Hpy188III	TCNNGA	2 cut(s)	161, 349
HpyAV	CCTTC	3 cut(s)	16, 186, 252
HpyCH4V	TGCA	3 cut(s)	172, 227, 278
HpyF3I	CTNAG	2 cut(s)	209, 302
Hsp92II	CATG	3 cut(s)	56, 104, 254
Kzo9I	GATC	1 cut(s)	205
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	2 cut(s)	126, 213
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	2 cut(s)	214, 241
MaeI	CTAG	2 cut(s)	215, 255
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	171
MfeI	CAATTG	1 cut(s)	152
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	2 cut(s)	152, 175
MlyI	GAGTC	2 cut(s)	25, 313
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	3 cut(s)	157, 196, 256
MunI	CAATTG	1 cut(s)	152
NdeI	CATATG	1 cut(s)	282
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	3 cut(s)	56, 104, 254
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	2 cut(s)	25, 312
PpsI	GAGTC	2 cut(s)	25, 312
PscI	ACATGT	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	205
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	2 cut(s)	25, 313
SetI	ASST	3 cut(s)	27, 197, 295
SfaNI	GCATC	2 cut(s)	214, 241
Sse9I	AATT	2 cut(s)	152, 175
SspMI	CTAG	2 cut(s)	215, 255
TasI	AATT	2 cut(s)	152, 175
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	87
XapI	RAATTY	1 cut(s)	175
XceI	RCATGY	1 cut(s)	56
XspI	CTAG	2 cut(s)	215, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.